Wall clock time and date at job start Mon Mar 30 2020 04:49:03
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52996 * 1
3 3 H 1.08999 * 109.48789 * 2 1
4 4 C 1.53096 * 109.48298 * 239.97178 * 2 1 3
5 5 C 1.53173 * 109.16677 * 182.40880 * 4 2 1
6 6 H 1.09007 * 109.61638 * 297.07162 * 5 4 2
7 7 N 1.46497 * 109.54548 * 176.84433 * 5 4 2
8 8 S 1.65608 * 119.99652 * 95.44315 * 7 5 4
9 9 O 1.42104 * 106.39724 * 178.54027 * 8 7 5
10 10 O 1.42097 * 106.40199 * 311.45938 * 8 7 5
11 11 C 1.76195 * 107.21632 * 65.00196 * 8 7 5
12 12 H 1.08001 * 120.00866 * 359.97438 * 11 8 7
13 13 C 1.37878 * 119.99874 * 179.97438 * 11 8 7
14 14 N 1.31517 * 120.00033 * 359.97438 * 13 11 8
15 15 Si 1.86800 * 120.00076 * 179.97438 * 13 11 8
16 16 H 1.48496 * 109.47359 * 359.97438 * 15 13 11
17 17 H 1.48504 * 109.47176 * 119.99883 * 15 13 11
18 18 H 1.48507 * 109.47256 * 239.99728 * 15 13 11
19 19 C 1.53184 * 109.03624 * 56.97723 * 5 4 2
20 20 C 1.53091 * 109.16319 * 303.02222 * 19 5 4
21 21 H 1.09004 * 109.48123 * 297.62558 * 20 19 5
22 22 C 1.53002 * 109.47968 * 177.60229 * 20 19 5
23 23 O 1.42896 * 109.41388 * 57.60844 * 20 19 5
24 24 H 1.08996 * 109.47341 * 299.97158 * 1 2 3
25 25 H 1.08995 * 109.47362 * 59.97278 * 1 2 3
26 26 H 1.09003 * 109.47001 * 179.97438 * 1 2 3
27 27 H 1.08997 * 109.52049 * 62.49834 * 4 2 1
28 28 H 1.09004 * 109.52115 * 302.31676 * 4 2 1
29 29 H 0.96997 * 120.00126 * 275.44238 * 7 5 4
30 30 H 0.96997 * 119.99891 * 180.02562 * 14 13 11
31 31 H 1.09004 * 109.52114 * 62.92716 * 19 5 4
32 32 H 1.08997 * 109.52163 * 183.11635 * 19 5 4
33 33 H 1.09004 * 109.46916 * 59.99822 * 22 20 19
34 34 H 1.09000 * 109.47021 * 179.97438 * 22 20 19
35 35 H 1.08999 * 109.46854 * 299.99903 * 22 20 19
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8936 1.0275 0.0000
4 6 2.0406 -0.7223 -1.2496
5 6 3.5711 -0.7709 -1.2122
6 1 3.9703 0.2430 -1.2415
7 7 4.0658 -1.5260 -2.3660
8 16 4.5302 -0.7277 -3.7406
9 8 4.9858 -1.7222 -4.6476
10 8 3.4845 0.1840 -4.0479
11 6 5.9366 0.2496 -3.3261
12 1 6.3241 0.2382 -2.3181
13 6 6.5424 1.0289 -4.2887
14 7 6.0709 1.0425 -5.5164
15 14 8.0329 2.0655 -3.8492
16 1 8.3622 1.8755 -2.4138
17 1 9.1893 1.6481 -4.6823
18 1 7.7320 3.4976 -4.1022
19 6 4.0176 -1.4601 0.0809
20 6 3.4307 -0.7093 1.2791
21 1 3.8192 0.3090 1.2958
22 6 3.8229 -1.4264 2.5725
23 8 2.0066 -0.6742 1.1664
24 1 -0.3634 0.5134 0.8902
25 1 -0.3634 0.5142 -0.8897
26 1 -0.3633 -1.0277 -0.0005
27 1 1.7148 -0.1843 -2.1398
28 1 1.6443 -1.7375 -1.2710
29 1 4.1213 -2.4935 -2.3248
30 1 6.4973 1.5905 -6.1937
31 1 3.6613 -2.4902 0.0864
32 1 5.1058 -1.4497 0.1421
33 1 4.9093 -1.4538 2.6576
34 1 3.4053 -0.8914 3.4254
35 1 3.4340 -2.4445 2.5557
RHF calculation, no. of doubly occupied orbitals= 47
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000724519309.mol2 35
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 04:49:03
Heat of formation + Delta-G solvation = -159.454424 kcal
Electronic energy + Delta-G solvation = -19016.348513 eV
Core-core repulsion = 15946.964184 eV
Total energy + Delta-G solvation = -3069.384329 eV
No. of doubly occupied orbitals = 47
Molecular weight
(most abundant/longest-lived isotopes) = 263.102 amu
Computer time = 0.33 seconds
Orbital eigenvalues (eV)
-39.52561 -35.39815 -34.96263 -33.94638 -33.59049 -33.09915 -30.84324 -28.58310
-26.26265 -26.11752 -22.12606 -21.71598 -20.31556 -18.96334 -17.38177 -16.39353
-16.27842 -15.71557 -15.21079 -14.89221 -14.48430 -14.13605 -13.88321 -13.53938
-13.17156 -12.60029 -12.42014 -12.06412 -12.06353 -11.94529 -11.67823 -11.32811
-11.25796 -11.10420 -10.85158 -10.80483 -10.72290 -10.60759 -10.29218 -10.18926
-9.96848 -9.29122 -9.27713 -9.00885 -8.51864 -6.72141 -5.34032 2.33951
3.03410 3.12035 3.18636 3.77001 4.04022 4.60122 4.65064 4.82915
4.98284 5.01582 5.22490 5.27926 5.39852 5.50527 5.55998 5.59992
5.68974 5.78049 5.85033 5.85919 6.02080 6.05978 6.11229 6.16146
6.30279 6.34631 6.48008 6.59660 6.89758 7.30404 7.41564 7.89370
7.96869 8.87157 10.22104
Molecular weight = 263.10amu
Principal moments of inertia in cm(-1)
A = 0.023490 B = 0.006700 C = 0.006055
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1191.712848 B = 4178.051137 C = 4623.490868
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.142 4.142
2 C 0.088 3.912
3 H 0.061 0.939
4 C -0.168 4.168
5 C 0.161 3.839
6 H 0.088 0.912
7 N -1.131 6.131
8 S 2.714 3.286
9 O -1.008 7.008
10 O -1.005 7.005
11 C -1.021 5.021
12 H 0.102 0.898
13 C 0.133 3.867
14 N -0.845 5.845
15 Si 0.919 3.081
16 H -0.262 1.262
17 H -0.271 1.271
18 H -0.271 1.271
19 C -0.156 4.156
20 C 0.088 3.912
21 H 0.060 0.940
22 C -0.142 4.142
23 O -0.381 6.381
24 H 0.059 0.941
25 H 0.072 0.928
26 H 0.061 0.939
27 H 0.090 0.910
28 H 0.071 0.929
29 H 0.401 0.599
30 H 0.290 0.710
31 H 0.074 0.926
32 H 0.080 0.920
33 H 0.070 0.930
34 H 0.060 0.940
35 H 0.062 0.938
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -4.912 -2.050 13.148 14.185
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.199 4.199
2 C 0.030 3.970
3 H 0.079 0.921
4 C -0.208 4.208
5 C 0.052 3.948
6 H 0.106 0.894
7 N -0.883 5.883
8 S 2.813 3.187
9 O -0.999 6.999
10 O -0.995 6.995
11 C -1.155 5.155
12 H 0.120 0.880
13 C -0.085 4.085
14 N -0.474 5.474
15 Si 0.743 3.257
16 H -0.186 1.186
17 H -0.196 1.196
18 H -0.196 1.196
19 C -0.195 4.195
20 C 0.029 3.971
21 H 0.078 0.922
22 C -0.199 4.199
23 O -0.301 6.301
24 H 0.078 0.922
25 H 0.091 0.909
26 H 0.080 0.920
27 H 0.109 0.891
28 H 0.090 0.910
29 H 0.232 0.768
30 H 0.101 0.899
31 H 0.092 0.908
32 H 0.099 0.901
33 H 0.089 0.911
34 H 0.079 0.921
35 H 0.081 0.919
Dipole moment (debyes) X Y Z Total
from point charges -5.492 -1.956 12.222 13.541
hybrid contribution 1.506 0.429 0.325 1.599
sum -3.986 -1.527 12.547 13.253
Atomic orbital electron populations
1.21743 0.93184 1.02705 1.02275 1.22082 0.94928 0.95286 0.84729
0.92145 1.22829 0.96638 1.02191 0.99130 1.20543 0.92942 0.95853
0.85426 0.89359 1.56081 1.82599 1.17472 1.32164 1.00451 0.74973
0.73047 0.70182 1.93373 1.83170 1.62021 1.61303 1.93354 1.59140
1.64728 1.82298 1.30596 1.35501 1.43798 1.05574 0.88001 1.24746
0.97005 0.93613 0.93152 1.69905 1.39219 1.35939 1.02381 0.86154
0.80501 0.79340 0.79702 1.18623 1.19575 1.19588 1.22585 1.01873
1.00670 0.94356 1.22046 0.81396 0.98754 0.94866 0.92195 1.21747
1.01267 1.00964 0.95940 1.87862 1.20711 1.78218 1.43331 0.92159
0.90875 0.92006 0.89112 0.91041 0.76828 0.89932 0.90771 0.90136
0.91107 0.92052 0.91939
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -1.64 9.56 37.16 0.36 -1.28 16
2 C 0.09 1.22 3.26 -26.68 -0.09 1.13 16
3 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16
4 C -0.17 -2.69 5.03 -26.59 -0.13 -2.82 16
5 C 0.16 2.76 2.74 -67.75 -0.19 2.58 16
6 H 0.09 1.61 7.86 -51.93 -0.41 1.21 16
7 N -1.13 -22.18 5.48 -4.73 -0.03 -22.21 16
8 S 2.71 71.16 4.93 -107.50 -0.53 70.63 16
9 O -1.01 -29.58 18.02 -57.17 -1.03 -30.61 16
10 O -1.01 -28.71 17.39 -57.17 -0.99 -29.70 16
11 C -1.02 -27.77 9.58 30.60 0.29 -27.48 16
12 H 0.10 2.53 7.81 -52.49 -0.41 2.12 16
13 C 0.13 3.68 5.46 -17.82 -0.10 3.59 16
14 N -0.84 -24.78 13.19 55.43 0.73 -24.05 16
15 Si 0.92 20.40 29.54 -169.99 -5.02 15.38 16
16 H -0.26 -5.59 7.11 56.52 0.40 -5.18 16
17 H -0.27 -5.81 7.11 56.52 0.40 -5.41 16
18 H -0.27 -5.79 7.11 56.52 0.40 -5.39 16
19 C -0.16 -2.16 4.95 -26.59 -0.13 -2.29 16
20 C 0.09 1.11 3.26 -26.68 -0.09 1.03 16
21 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16
22 C -0.14 -1.44 9.57 37.16 0.36 -1.08 16
23 O -0.38 -5.33 10.05 -35.23 -0.35 -5.68 16
24 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16
25 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16
26 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16
27 H 0.09 1.61 7.75 -51.93 -0.40 1.21 16
28 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16
29 H 0.40 6.85 8.84 -34.48 -0.30 6.55 16
30 H 0.29 7.62 8.31 -40.82 -0.34 7.28 16
31 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16
32 H 0.08 1.07 8.14 -51.93 -0.42 0.64 16
33 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16
34 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16
35 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16
LS Contribution 303.48 15.07 4.57 4.57
Total: -1.00 -34.26 303.48 -7.68 -41.94
By element:
Atomic # 1 Polarization: 11.66 SS G_CDS: -5.31 Total: 6.35 kcal
Atomic # 6 Polarization: -26.92 SS G_CDS: 0.28 Total: -26.64 kcal
Atomic # 7 Polarization: -46.96 SS G_CDS: 0.71 Total: -46.26 kcal
Atomic # 8 Polarization: -63.61 SS G_CDS: -2.38 Total: -65.99 kcal
Atomic # 14 Polarization: 20.40 SS G_CDS: -5.02 Total: 15.38 kcal
Atomic # 16 Polarization: 71.16 SS G_CDS: -0.53 Total: 70.63 kcal
Total LS contribution 4.57 Total: 4.57 kcal
Total: -34.26 -7.68 -41.94 kcal
The number of atoms in the molecule is 35
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000724519309.mol2 35
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -117.514 kcal
(2) G-P(sol) polarization free energy of solvation -34.260 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -151.774 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.681 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.941 kcal
(6) G-S(sol) free energy of system = (1) + (5) -159.454 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.33 seconds