Wall clock time and date at job start Mon Mar 30 2020 04:49:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08999 * 109.48789 * 2 1 4 4 C 1.53096 * 109.48298 * 239.97178 * 2 1 3 5 5 C 1.53173 * 109.16677 * 182.40880 * 4 2 1 6 6 H 1.09007 * 109.61638 * 297.07162 * 5 4 2 7 7 N 1.46497 * 109.54548 * 176.84433 * 5 4 2 8 8 S 1.65608 * 119.99652 * 95.44315 * 7 5 4 9 9 O 1.42104 * 106.39724 * 178.54027 * 8 7 5 10 10 O 1.42097 * 106.40199 * 311.45938 * 8 7 5 11 11 C 1.76195 * 107.21632 * 65.00196 * 8 7 5 12 12 H 1.08001 * 120.00866 * 359.97438 * 11 8 7 13 13 C 1.37878 * 119.99874 * 179.97438 * 11 8 7 14 14 N 1.31517 * 120.00033 * 359.97438 * 13 11 8 15 15 Si 1.86800 * 120.00076 * 179.97438 * 13 11 8 16 16 H 1.48496 * 109.47359 * 359.97438 * 15 13 11 17 17 H 1.48504 * 109.47176 * 119.99883 * 15 13 11 18 18 H 1.48507 * 109.47256 * 239.99728 * 15 13 11 19 19 C 1.53184 * 109.03624 * 56.97723 * 5 4 2 20 20 C 1.53091 * 109.16319 * 303.02222 * 19 5 4 21 21 H 1.09004 * 109.48123 * 297.62558 * 20 19 5 22 22 C 1.53002 * 109.47968 * 177.60229 * 20 19 5 23 23 O 1.42896 * 109.41388 * 57.60844 * 20 19 5 24 24 H 1.08996 * 109.47341 * 299.97158 * 1 2 3 25 25 H 1.08995 * 109.47362 * 59.97278 * 1 2 3 26 26 H 1.09003 * 109.47001 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.52049 * 62.49834 * 4 2 1 28 28 H 1.09004 * 109.52115 * 302.31676 * 4 2 1 29 29 H 0.96997 * 120.00126 * 275.44238 * 7 5 4 30 30 H 0.96997 * 119.99891 * 180.02562 * 14 13 11 31 31 H 1.09004 * 109.52114 * 62.92716 * 19 5 4 32 32 H 1.08997 * 109.52163 * 183.11635 * 19 5 4 33 33 H 1.09004 * 109.46916 * 59.99822 * 22 20 19 34 34 H 1.09000 * 109.47021 * 179.97438 * 22 20 19 35 35 H 1.08999 * 109.46854 * 299.99903 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8936 1.0275 0.0000 4 6 2.0406 -0.7223 -1.2496 5 6 3.5711 -0.7709 -1.2122 6 1 3.9703 0.2430 -1.2415 7 7 4.0658 -1.5260 -2.3660 8 16 4.5302 -0.7277 -3.7406 9 8 4.9858 -1.7222 -4.6476 10 8 3.4845 0.1840 -4.0479 11 6 5.9366 0.2496 -3.3261 12 1 6.3241 0.2382 -2.3181 13 6 6.5424 1.0289 -4.2887 14 7 6.0709 1.0425 -5.5164 15 14 8.0329 2.0655 -3.8492 16 1 8.3622 1.8755 -2.4138 17 1 9.1893 1.6481 -4.6823 18 1 7.7320 3.4976 -4.1022 19 6 4.0176 -1.4601 0.0809 20 6 3.4307 -0.7093 1.2791 21 1 3.8192 0.3090 1.2958 22 6 3.8229 -1.4264 2.5725 23 8 2.0066 -0.6742 1.1664 24 1 -0.3634 0.5134 0.8902 25 1 -0.3634 0.5142 -0.8897 26 1 -0.3633 -1.0277 -0.0005 27 1 1.7148 -0.1843 -2.1398 28 1 1.6443 -1.7375 -1.2710 29 1 4.1213 -2.4935 -2.3248 30 1 6.4973 1.5905 -6.1937 31 1 3.6613 -2.4902 0.0864 32 1 5.1058 -1.4497 0.1421 33 1 4.9093 -1.4538 2.6576 34 1 3.4053 -0.8914 3.4254 35 1 3.4340 -2.4445 2.5557 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000724519309.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:49:03 Heat of formation + Delta-G solvation = -159.454424 kcal Electronic energy + Delta-G solvation = -19016.348513 eV Core-core repulsion = 15946.964184 eV Total energy + Delta-G solvation = -3069.384329 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 263.102 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.52561 -35.39815 -34.96263 -33.94638 -33.59049 -33.09915 -30.84324 -28.58310 -26.26265 -26.11752 -22.12606 -21.71598 -20.31556 -18.96334 -17.38177 -16.39353 -16.27842 -15.71557 -15.21079 -14.89221 -14.48430 -14.13605 -13.88321 -13.53938 -13.17156 -12.60029 -12.42014 -12.06412 -12.06353 -11.94529 -11.67823 -11.32811 -11.25796 -11.10420 -10.85158 -10.80483 -10.72290 -10.60759 -10.29218 -10.18926 -9.96848 -9.29122 -9.27713 -9.00885 -8.51864 -6.72141 -5.34032 2.33951 3.03410 3.12035 3.18636 3.77001 4.04022 4.60122 4.65064 4.82915 4.98284 5.01582 5.22490 5.27926 5.39852 5.50527 5.55998 5.59992 5.68974 5.78049 5.85033 5.85919 6.02080 6.05978 6.11229 6.16146 6.30279 6.34631 6.48008 6.59660 6.89758 7.30404 7.41564 7.89370 7.96869 8.87157 10.22104 Molecular weight = 263.10amu Principal moments of inertia in cm(-1) A = 0.023490 B = 0.006700 C = 0.006055 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1191.712848 B = 4178.051137 C = 4623.490868 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.088 3.912 3 H 0.061 0.939 4 C -0.168 4.168 5 C 0.161 3.839 6 H 0.088 0.912 7 N -1.131 6.131 8 S 2.714 3.286 9 O -1.008 7.008 10 O -1.005 7.005 11 C -1.021 5.021 12 H 0.102 0.898 13 C 0.133 3.867 14 N -0.845 5.845 15 Si 0.919 3.081 16 H -0.262 1.262 17 H -0.271 1.271 18 H -0.271 1.271 19 C -0.156 4.156 20 C 0.088 3.912 21 H 0.060 0.940 22 C -0.142 4.142 23 O -0.381 6.381 24 H 0.059 0.941 25 H 0.072 0.928 26 H 0.061 0.939 27 H 0.090 0.910 28 H 0.071 0.929 29 H 0.401 0.599 30 H 0.290 0.710 31 H 0.074 0.926 32 H 0.080 0.920 33 H 0.070 0.930 34 H 0.060 0.940 35 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.912 -2.050 13.148 14.185 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.030 3.970 3 H 0.079 0.921 4 C -0.208 4.208 5 C 0.052 3.948 6 H 0.106 0.894 7 N -0.883 5.883 8 S 2.813 3.187 9 O -0.999 6.999 10 O -0.995 6.995 11 C -1.155 5.155 12 H 0.120 0.880 13 C -0.085 4.085 14 N -0.474 5.474 15 Si 0.743 3.257 16 H -0.186 1.186 17 H -0.196 1.196 18 H -0.196 1.196 19 C -0.195 4.195 20 C 0.029 3.971 21 H 0.078 0.922 22 C -0.199 4.199 23 O -0.301 6.301 24 H 0.078 0.922 25 H 0.091 0.909 26 H 0.080 0.920 27 H 0.109 0.891 28 H 0.090 0.910 29 H 0.232 0.768 30 H 0.101 0.899 31 H 0.092 0.908 32 H 0.099 0.901 33 H 0.089 0.911 34 H 0.079 0.921 35 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -5.492 -1.956 12.222 13.541 hybrid contribution 1.506 0.429 0.325 1.599 sum -3.986 -1.527 12.547 13.253 Atomic orbital electron populations 1.21743 0.93184 1.02705 1.02275 1.22082 0.94928 0.95286 0.84729 0.92145 1.22829 0.96638 1.02191 0.99130 1.20543 0.92942 0.95853 0.85426 0.89359 1.56081 1.82599 1.17472 1.32164 1.00451 0.74973 0.73047 0.70182 1.93373 1.83170 1.62021 1.61303 1.93354 1.59140 1.64728 1.82298 1.30596 1.35501 1.43798 1.05574 0.88001 1.24746 0.97005 0.93613 0.93152 1.69905 1.39219 1.35939 1.02381 0.86154 0.80501 0.79340 0.79702 1.18623 1.19575 1.19588 1.22585 1.01873 1.00670 0.94356 1.22046 0.81396 0.98754 0.94866 0.92195 1.21747 1.01267 1.00964 0.95940 1.87862 1.20711 1.78218 1.43331 0.92159 0.90875 0.92006 0.89112 0.91041 0.76828 0.89932 0.90771 0.90136 0.91107 0.92052 0.91939 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.64 9.56 37.16 0.36 -1.28 16 2 C 0.09 1.22 3.26 -26.68 -0.09 1.13 16 3 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 4 C -0.17 -2.69 5.03 -26.59 -0.13 -2.82 16 5 C 0.16 2.76 2.74 -67.75 -0.19 2.58 16 6 H 0.09 1.61 7.86 -51.93 -0.41 1.21 16 7 N -1.13 -22.18 5.48 -4.73 -0.03 -22.21 16 8 S 2.71 71.16 4.93 -107.50 -0.53 70.63 16 9 O -1.01 -29.58 18.02 -57.17 -1.03 -30.61 16 10 O -1.01 -28.71 17.39 -57.17 -0.99 -29.70 16 11 C -1.02 -27.77 9.58 30.60 0.29 -27.48 16 12 H 0.10 2.53 7.81 -52.49 -0.41 2.12 16 13 C 0.13 3.68 5.46 -17.82 -0.10 3.59 16 14 N -0.84 -24.78 13.19 55.43 0.73 -24.05 16 15 Si 0.92 20.40 29.54 -169.99 -5.02 15.38 16 16 H -0.26 -5.59 7.11 56.52 0.40 -5.18 16 17 H -0.27 -5.81 7.11 56.52 0.40 -5.41 16 18 H -0.27 -5.79 7.11 56.52 0.40 -5.39 16 19 C -0.16 -2.16 4.95 -26.59 -0.13 -2.29 16 20 C 0.09 1.11 3.26 -26.68 -0.09 1.03 16 21 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 22 C -0.14 -1.44 9.57 37.16 0.36 -1.08 16 23 O -0.38 -5.33 10.05 -35.23 -0.35 -5.68 16 24 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 25 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 26 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 27 H 0.09 1.61 7.75 -51.93 -0.40 1.21 16 28 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 29 H 0.40 6.85 8.84 -34.48 -0.30 6.55 16 30 H 0.29 7.62 8.31 -40.82 -0.34 7.28 16 31 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 32 H 0.08 1.07 8.14 -51.93 -0.42 0.64 16 33 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 34 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 35 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 LS Contribution 303.48 15.07 4.57 4.57 Total: -1.00 -34.26 303.48 -7.68 -41.94 By element: Atomic # 1 Polarization: 11.66 SS G_CDS: -5.31 Total: 6.35 kcal Atomic # 6 Polarization: -26.92 SS G_CDS: 0.28 Total: -26.64 kcal Atomic # 7 Polarization: -46.96 SS G_CDS: 0.71 Total: -46.26 kcal Atomic # 8 Polarization: -63.61 SS G_CDS: -2.38 Total: -65.99 kcal Atomic # 14 Polarization: 20.40 SS G_CDS: -5.02 Total: 15.38 kcal Atomic # 16 Polarization: 71.16 SS G_CDS: -0.53 Total: 70.63 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -34.26 -7.68 -41.94 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000724519309.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -117.514 kcal (2) G-P(sol) polarization free energy of solvation -34.260 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -151.774 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.681 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.941 kcal (6) G-S(sol) free energy of system = (1) + (5) -159.454 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds