Wall clock time and date at job start Mon Mar 30 2020 04:49:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08999 * 109.48789 * 2 1 4 4 C 1.53096 * 109.48298 * 239.97178 * 2 1 3 5 5 C 1.53173 * 109.16677 * 182.40880 * 4 2 1 6 6 H 1.09007 * 109.61638 * 297.07162 * 5 4 2 7 7 N 1.46497 * 109.54548 * 176.84433 * 5 4 2 8 8 S 1.65608 * 119.99652 * 95.44315 * 7 5 4 9 9 O 1.42104 * 106.39724 * 178.54027 * 8 7 5 10 10 O 1.42097 * 106.40199 * 311.45938 * 8 7 5 11 11 C 1.76195 * 107.21632 * 65.00196 * 8 7 5 12 12 H 1.08001 * 120.00866 * 359.97438 * 11 8 7 13 13 C 1.37878 * 119.99874 * 179.97438 * 11 8 7 14 14 N 1.31517 * 120.00033 * 359.97438 * 13 11 8 15 15 Si 1.86800 * 120.00076 * 179.97438 * 13 11 8 16 16 H 1.48496 * 109.47359 * 359.97438 * 15 13 11 17 17 H 1.48504 * 109.47176 * 119.99883 * 15 13 11 18 18 H 1.48507 * 109.47256 * 239.99728 * 15 13 11 19 19 C 1.53184 * 109.03624 * 56.97723 * 5 4 2 20 20 C 1.53091 * 109.16319 * 303.02222 * 19 5 4 21 21 H 1.09004 * 109.48123 * 297.62558 * 20 19 5 22 22 C 1.53002 * 109.47968 * 177.60229 * 20 19 5 23 23 O 1.42896 * 109.41388 * 57.60844 * 20 19 5 24 24 H 1.08996 * 109.47341 * 299.97158 * 1 2 3 25 25 H 1.08995 * 109.47362 * 59.97278 * 1 2 3 26 26 H 1.09003 * 109.47001 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.52049 * 62.49834 * 4 2 1 28 28 H 1.09004 * 109.52115 * 302.31676 * 4 2 1 29 29 H 0.96997 * 120.00126 * 275.44238 * 7 5 4 30 30 H 0.96997 * 119.99891 * 180.02562 * 14 13 11 31 31 H 1.09004 * 109.52114 * 62.92716 * 19 5 4 32 32 H 1.08997 * 109.52163 * 183.11635 * 19 5 4 33 33 H 1.09004 * 109.46916 * 59.99822 * 22 20 19 34 34 H 1.09000 * 109.47021 * 179.97438 * 22 20 19 35 35 H 1.08999 * 109.46854 * 299.99903 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8936 1.0275 0.0000 4 6 2.0406 -0.7223 -1.2496 5 6 3.5711 -0.7709 -1.2122 6 1 3.9703 0.2430 -1.2415 7 7 4.0658 -1.5260 -2.3660 8 16 4.5302 -0.7277 -3.7406 9 8 4.9858 -1.7222 -4.6476 10 8 3.4845 0.1840 -4.0479 11 6 5.9366 0.2496 -3.3261 12 1 6.3241 0.2382 -2.3181 13 6 6.5424 1.0289 -4.2887 14 7 6.0709 1.0425 -5.5164 15 14 8.0329 2.0655 -3.8492 16 1 8.3622 1.8755 -2.4138 17 1 9.1893 1.6481 -4.6823 18 1 7.7320 3.4976 -4.1022 19 6 4.0176 -1.4601 0.0809 20 6 3.4307 -0.7093 1.2791 21 1 3.8192 0.3090 1.2958 22 6 3.8229 -1.4264 2.5725 23 8 2.0066 -0.6742 1.1664 24 1 -0.3634 0.5134 0.8902 25 1 -0.3634 0.5142 -0.8897 26 1 -0.3633 -1.0277 -0.0005 27 1 1.7148 -0.1843 -2.1398 28 1 1.6443 -1.7375 -1.2710 29 1 4.1213 -2.4935 -2.3248 30 1 6.4973 1.5905 -6.1937 31 1 3.6613 -2.4902 0.0864 32 1 5.1058 -1.4497 0.1421 33 1 4.9093 -1.4538 2.6576 34 1 3.4053 -0.8914 3.4254 35 1 3.4340 -2.4445 2.5557 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000724519309.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:49:03 Heat of formation + Delta-G solvation = -186.682910 kcal Electronic energy + Delta-G solvation = -19017.529228 eV Core-core repulsion = 15946.964184 eV Total energy + Delta-G solvation = -3070.565044 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 263.102 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.66743 -37.43145 -36.53352 -36.13781 -35.19080 -34.59540 -32.10504 -29.71342 -28.28733 -27.29292 -23.36173 -22.73714 -21.63432 -20.88916 -19.30441 -18.28421 -17.43702 -17.27945 -16.83578 -16.41881 -15.98145 -15.60084 -15.40831 -15.20530 -14.47369 -14.01800 -13.54296 -13.47431 -13.35033 -13.04608 -12.98716 -12.80127 -12.74479 -12.61649 -12.51946 -12.43248 -12.34919 -12.28935 -12.05407 -11.82824 -11.28163 -11.20867 -10.96756 -10.46347 -10.19481 -8.77306 -7.50237 0.34402 1.32202 1.33377 1.50775 2.19338 2.56460 2.75072 2.93949 3.62151 3.74511 3.81399 3.94388 4.04622 4.18901 4.24972 4.38100 4.52456 4.54517 4.59534 4.74528 4.77890 4.83504 4.92912 5.04016 5.11153 5.15293 5.20816 5.25938 5.29635 5.39627 5.42608 5.88248 6.35151 6.37237 6.76699 8.19589 Molecular weight = 263.10amu Principal moments of inertia in cm(-1) A = 0.023490 B = 0.006700 C = 0.006055 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1191.712848 B = 4178.051137 C = 4623.490868 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.088 3.912 3 H 0.059 0.941 4 C -0.167 4.167 5 C 0.149 3.851 6 H 0.073 0.927 7 N -1.115 6.115 8 S 2.718 3.282 9 O -1.048 7.048 10 O -1.039 7.039 11 C -1.039 5.039 12 H 0.121 0.879 13 C 0.069 3.931 14 N -0.895 5.895 15 Si 0.989 3.011 16 H -0.245 1.245 17 H -0.260 1.260 18 H -0.259 1.259 19 C -0.148 4.148 20 C 0.082 3.918 21 H 0.062 0.938 22 C -0.137 4.137 23 O -0.384 6.384 24 H 0.074 0.926 25 H 0.076 0.924 26 H 0.065 0.935 27 H 0.065 0.935 28 H 0.079 0.921 29 H 0.414 0.586 30 H 0.299 0.701 31 H 0.084 0.916 32 H 0.089 0.911 33 H 0.086 0.914 34 H 0.068 0.932 35 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.095 -1.820 15.558 16.191 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.030 3.970 3 H 0.077 0.923 4 C -0.207 4.207 5 C 0.042 3.958 6 H 0.091 0.909 7 N -0.872 5.872 8 S 2.819 3.181 9 O -1.038 7.038 10 O -1.028 7.028 11 C -1.173 5.173 12 H 0.139 0.861 13 C -0.144 4.144 14 N -0.526 5.526 15 Si 0.807 3.193 16 H -0.167 1.167 17 H -0.184 1.184 18 H -0.183 1.183 19 C -0.187 4.187 20 C 0.024 3.976 21 H 0.080 0.920 22 C -0.194 4.194 23 O -0.304 6.304 24 H 0.093 0.907 25 H 0.095 0.905 26 H 0.084 0.916 27 H 0.084 0.916 28 H 0.097 0.903 29 H 0.248 0.752 30 H 0.109 0.891 31 H 0.103 0.897 32 H 0.107 0.893 33 H 0.105 0.895 34 H 0.088 0.912 35 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -4.697 -1.751 14.638 15.473 hybrid contribution 1.191 0.311 -0.395 1.293 sum -3.506 -1.440 14.244 14.739 Atomic orbital electron populations 1.21744 0.91429 1.03262 1.03191 1.22104 0.96366 0.94811 0.83707 0.92256 1.22797 0.95817 1.02652 0.99424 1.20843 0.93762 0.95312 0.85900 0.90859 1.55472 1.82335 1.18095 1.31344 0.99949 0.74657 0.72569 0.70903 1.93309 1.83717 1.62924 1.63876 1.93306 1.60073 1.65863 1.83586 1.30927 1.35790 1.43933 1.06624 0.86099 1.26030 1.00578 0.94937 0.92813 1.69999 1.41307 1.37415 1.03883 0.85112 0.76067 0.77627 0.80449 1.16749 1.18439 1.18340 1.22566 1.02522 1.00967 0.92694 1.22240 0.80732 0.99147 0.95484 0.91986 1.21742 1.02357 1.00752 0.94530 1.87876 1.21520 1.78139 1.42902 0.90713 0.90524 0.91641 0.91634 0.90250 0.75178 0.89111 0.89709 0.89263 0.89535 0.91249 0.91705 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.00 9.56 71.98 0.69 -2.31 16 2 C 0.09 2.35 3.26 30.63 0.10 2.45 16 3 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 4 C -0.17 -5.30 5.03 30.68 0.15 -5.14 16 5 C 0.15 5.05 2.74 45.11 0.12 5.17 16 6 H 0.07 2.69 7.86 -2.38 -0.02 2.67 16 7 N -1.12 -43.74 5.48 -168.89 -0.93 -44.66 16 8 S 2.72 145.71 4.93 -56.49 -0.28 145.43 16 9 O -1.05 -63.18 18.02 -128.00 -2.31 -65.49 16 10 O -1.04 -61.34 17.39 -128.00 -2.23 -63.57 16 11 C -1.04 -56.57 9.58 67.73 0.65 -55.92 16 12 H 0.12 5.88 7.81 -2.91 -0.02 5.85 16 13 C 0.07 3.83 5.46 84.65 0.46 4.29 16 14 N -0.89 -53.39 13.19 21.45 0.28 -53.11 16 15 Si 0.99 40.78 29.54 68.60 2.03 42.81 16 16 H -0.24 -9.28 7.11 99.48 0.71 -8.57 16 17 H -0.26 -10.19 7.11 99.48 0.71 -9.48 16 18 H -0.26 -10.10 7.11 99.48 0.71 -9.39 16 19 C -0.15 -3.80 4.95 30.69 0.15 -3.65 16 20 C 0.08 1.89 3.26 30.63 0.10 1.99 16 21 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 22 C -0.14 -2.34 9.57 71.98 0.69 -1.65 16 23 O -0.38 -9.91 10.05 -148.98 -1.50 -11.40 16 24 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 25 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 26 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 27 H 0.06 2.40 7.75 -2.39 -0.02 2.38 16 28 H 0.08 2.34 8.14 -2.38 -0.02 2.32 16 29 H 0.41 13.97 8.84 -96.74 -0.86 13.12 16 30 H 0.30 15.95 8.31 -92.71 -0.77 15.18 16 31 H 0.08 2.00 8.14 -2.39 -0.02 1.98 16 32 H 0.09 2.14 8.14 -2.39 -0.02 2.12 16 33 H 0.09 1.22 8.14 -2.38 -0.02 1.20 16 34 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 35 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 Total: -1.00 -74.45 303.48 -1.58 -76.03 By element: Atomic # 1 Polarization: 28.53 SS G_CDS: 0.22 Total: 28.75 kcal Atomic # 6 Polarization: -57.90 SS G_CDS: 3.12 Total: -54.78 kcal Atomic # 7 Polarization: -97.13 SS G_CDS: -0.64 Total: -97.77 kcal Atomic # 8 Polarization: -134.44 SS G_CDS: -6.03 Total: -140.47 kcal Atomic # 14 Polarization: 40.78 SS G_CDS: 2.03 Total: 42.81 kcal Atomic # 16 Polarization: 145.71 SS G_CDS: -0.28 Total: 145.43 kcal Total: -74.45 -1.58 -76.03 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000724519309.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -110.650 kcal (2) G-P(sol) polarization free energy of solvation -74.448 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -185.099 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.584 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.032 kcal (6) G-S(sol) free energy of system = (1) + (5) -186.683 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds