Wall clock time and date at job start Mon Mar 30 2020 04:49:03
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52996 * 1
3 3 H 1.08999 * 109.48789 * 2 1
4 4 C 1.53096 * 109.48298 * 239.97178 * 2 1 3
5 5 C 1.53173 * 109.16677 * 182.40880 * 4 2 1
6 6 H 1.09007 * 109.61638 * 297.07162 * 5 4 2
7 7 N 1.46497 * 109.54548 * 176.84433 * 5 4 2
8 8 S 1.65608 * 119.99652 * 95.44315 * 7 5 4
9 9 O 1.42104 * 106.39724 * 178.54027 * 8 7 5
10 10 O 1.42097 * 106.40199 * 311.45938 * 8 7 5
11 11 C 1.76195 * 107.21632 * 65.00196 * 8 7 5
12 12 H 1.08001 * 120.00866 * 359.97438 * 11 8 7
13 13 C 1.37878 * 119.99874 * 179.97438 * 11 8 7
14 14 N 1.31517 * 120.00033 * 359.97438 * 13 11 8
15 15 Si 1.86800 * 120.00076 * 179.97438 * 13 11 8
16 16 H 1.48496 * 109.47359 * 359.97438 * 15 13 11
17 17 H 1.48504 * 109.47176 * 119.99883 * 15 13 11
18 18 H 1.48507 * 109.47256 * 239.99728 * 15 13 11
19 19 C 1.53184 * 109.03624 * 56.97723 * 5 4 2
20 20 C 1.53091 * 109.16319 * 303.02222 * 19 5 4
21 21 H 1.09004 * 109.48123 * 297.62558 * 20 19 5
22 22 C 1.53002 * 109.47968 * 177.60229 * 20 19 5
23 23 O 1.42896 * 109.41388 * 57.60844 * 20 19 5
24 24 H 1.08996 * 109.47341 * 299.97158 * 1 2 3
25 25 H 1.08995 * 109.47362 * 59.97278 * 1 2 3
26 26 H 1.09003 * 109.47001 * 179.97438 * 1 2 3
27 27 H 1.08997 * 109.52049 * 62.49834 * 4 2 1
28 28 H 1.09004 * 109.52115 * 302.31676 * 4 2 1
29 29 H 0.96997 * 120.00126 * 275.44238 * 7 5 4
30 30 H 0.96997 * 119.99891 * 180.02562 * 14 13 11
31 31 H 1.09004 * 109.52114 * 62.92716 * 19 5 4
32 32 H 1.08997 * 109.52163 * 183.11635 * 19 5 4
33 33 H 1.09004 * 109.46916 * 59.99822 * 22 20 19
34 34 H 1.09000 * 109.47021 * 179.97438 * 22 20 19
35 35 H 1.08999 * 109.46854 * 299.99903 * 22 20 19
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8936 1.0275 0.0000
4 6 2.0406 -0.7223 -1.2496
5 6 3.5711 -0.7709 -1.2122
6 1 3.9703 0.2430 -1.2415
7 7 4.0658 -1.5260 -2.3660
8 16 4.5302 -0.7277 -3.7406
9 8 4.9858 -1.7222 -4.6476
10 8 3.4845 0.1840 -4.0479
11 6 5.9366 0.2496 -3.3261
12 1 6.3241 0.2382 -2.3181
13 6 6.5424 1.0289 -4.2887
14 7 6.0709 1.0425 -5.5164
15 14 8.0329 2.0655 -3.8492
16 1 8.3622 1.8755 -2.4138
17 1 9.1893 1.6481 -4.6823
18 1 7.7320 3.4976 -4.1022
19 6 4.0176 -1.4601 0.0809
20 6 3.4307 -0.7093 1.2791
21 1 3.8192 0.3090 1.2958
22 6 3.8229 -1.4264 2.5725
23 8 2.0066 -0.6742 1.1664
24 1 -0.3634 0.5134 0.8902
25 1 -0.3634 0.5142 -0.8897
26 1 -0.3633 -1.0277 -0.0005
27 1 1.7148 -0.1843 -2.1398
28 1 1.6443 -1.7375 -1.2710
29 1 4.1213 -2.4935 -2.3248
30 1 6.4973 1.5905 -6.1937
31 1 3.6613 -2.4902 0.0864
32 1 5.1058 -1.4497 0.1421
33 1 4.9093 -1.4538 2.6576
34 1 3.4053 -0.8914 3.4254
35 1 3.4340 -2.4445 2.5557
RHF calculation, no. of doubly occupied orbitals= 47
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000724519309.mol2 35
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 04:49:03
Heat of formation + Delta-G solvation = -186.682910 kcal
Electronic energy + Delta-G solvation = -19017.529228 eV
Core-core repulsion = 15946.964184 eV
Total energy + Delta-G solvation = -3070.565044 eV
No. of doubly occupied orbitals = 47
Molecular weight
(most abundant/longest-lived isotopes) = 263.102 amu
Computer time = 0.46 seconds
Orbital eigenvalues (eV)
-40.66743 -37.43145 -36.53352 -36.13781 -35.19080 -34.59540 -32.10504 -29.71342
-28.28733 -27.29292 -23.36173 -22.73714 -21.63432 -20.88916 -19.30441 -18.28421
-17.43702 -17.27945 -16.83578 -16.41881 -15.98145 -15.60084 -15.40831 -15.20530
-14.47369 -14.01800 -13.54296 -13.47431 -13.35033 -13.04608 -12.98716 -12.80127
-12.74479 -12.61649 -12.51946 -12.43248 -12.34919 -12.28935 -12.05407 -11.82824
-11.28163 -11.20867 -10.96756 -10.46347 -10.19481 -8.77306 -7.50237 0.34402
1.32202 1.33377 1.50775 2.19338 2.56460 2.75072 2.93949 3.62151
3.74511 3.81399 3.94388 4.04622 4.18901 4.24972 4.38100 4.52456
4.54517 4.59534 4.74528 4.77890 4.83504 4.92912 5.04016 5.11153
5.15293 5.20816 5.25938 5.29635 5.39627 5.42608 5.88248 6.35151
6.37237 6.76699 8.19589
Molecular weight = 263.10amu
Principal moments of inertia in cm(-1)
A = 0.023490 B = 0.006700 C = 0.006055
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1191.712848 B = 4178.051137 C = 4623.490868
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.139 4.139
2 C 0.088 3.912
3 H 0.059 0.941
4 C -0.167 4.167
5 C 0.149 3.851
6 H 0.073 0.927
7 N -1.115 6.115
8 S 2.718 3.282
9 O -1.048 7.048
10 O -1.039 7.039
11 C -1.039 5.039
12 H 0.121 0.879
13 C 0.069 3.931
14 N -0.895 5.895
15 Si 0.989 3.011
16 H -0.245 1.245
17 H -0.260 1.260
18 H -0.259 1.259
19 C -0.148 4.148
20 C 0.082 3.918
21 H 0.062 0.938
22 C -0.137 4.137
23 O -0.384 6.384
24 H 0.074 0.926
25 H 0.076 0.924
26 H 0.065 0.935
27 H 0.065 0.935
28 H 0.079 0.921
29 H 0.414 0.586
30 H 0.299 0.701
31 H 0.084 0.916
32 H 0.089 0.911
33 H 0.086 0.914
34 H 0.068 0.932
35 H 0.064 0.936
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -4.095 -1.820 15.558 16.191
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.196 4.196
2 C 0.030 3.970
3 H 0.077 0.923
4 C -0.207 4.207
5 C 0.042 3.958
6 H 0.091 0.909
7 N -0.872 5.872
8 S 2.819 3.181
9 O -1.038 7.038
10 O -1.028 7.028
11 C -1.173 5.173
12 H 0.139 0.861
13 C -0.144 4.144
14 N -0.526 5.526
15 Si 0.807 3.193
16 H -0.167 1.167
17 H -0.184 1.184
18 H -0.183 1.183
19 C -0.187 4.187
20 C 0.024 3.976
21 H 0.080 0.920
22 C -0.194 4.194
23 O -0.304 6.304
24 H 0.093 0.907
25 H 0.095 0.905
26 H 0.084 0.916
27 H 0.084 0.916
28 H 0.097 0.903
29 H 0.248 0.752
30 H 0.109 0.891
31 H 0.103 0.897
32 H 0.107 0.893
33 H 0.105 0.895
34 H 0.088 0.912
35 H 0.083 0.917
Dipole moment (debyes) X Y Z Total
from point charges -4.697 -1.751 14.638 15.473
hybrid contribution 1.191 0.311 -0.395 1.293
sum -3.506 -1.440 14.244 14.739
Atomic orbital electron populations
1.21744 0.91429 1.03262 1.03191 1.22104 0.96366 0.94811 0.83707
0.92256 1.22797 0.95817 1.02652 0.99424 1.20843 0.93762 0.95312
0.85900 0.90859 1.55472 1.82335 1.18095 1.31344 0.99949 0.74657
0.72569 0.70903 1.93309 1.83717 1.62924 1.63876 1.93306 1.60073
1.65863 1.83586 1.30927 1.35790 1.43933 1.06624 0.86099 1.26030
1.00578 0.94937 0.92813 1.69999 1.41307 1.37415 1.03883 0.85112
0.76067 0.77627 0.80449 1.16749 1.18439 1.18340 1.22566 1.02522
1.00967 0.92694 1.22240 0.80732 0.99147 0.95484 0.91986 1.21742
1.02357 1.00752 0.94530 1.87876 1.21520 1.78139 1.42902 0.90713
0.90524 0.91641 0.91634 0.90250 0.75178 0.89111 0.89709 0.89263
0.89535 0.91249 0.91705
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 21.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -3.00 9.56 71.98 0.69 -2.31 16
2 C 0.09 2.35 3.26 30.63 0.10 2.45 16
3 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16
4 C -0.17 -5.30 5.03 30.68 0.15 -5.14 16
5 C 0.15 5.05 2.74 45.11 0.12 5.17 16
6 H 0.07 2.69 7.86 -2.38 -0.02 2.67 16
7 N -1.12 -43.74 5.48 -168.89 -0.93 -44.66 16
8 S 2.72 145.71 4.93 -56.49 -0.28 145.43 16
9 O -1.05 -63.18 18.02 -128.00 -2.31 -65.49 16
10 O -1.04 -61.34 17.39 -128.00 -2.23 -63.57 16
11 C -1.04 -56.57 9.58 67.73 0.65 -55.92 16
12 H 0.12 5.88 7.81 -2.91 -0.02 5.85 16
13 C 0.07 3.83 5.46 84.65 0.46 4.29 16
14 N -0.89 -53.39 13.19 21.45 0.28 -53.11 16
15 Si 0.99 40.78 29.54 68.60 2.03 42.81 16
16 H -0.24 -9.28 7.11 99.48 0.71 -8.57 16
17 H -0.26 -10.19 7.11 99.48 0.71 -9.48 16
18 H -0.26 -10.10 7.11 99.48 0.71 -9.39 16
19 C -0.15 -3.80 4.95 30.69 0.15 -3.65 16
20 C 0.08 1.89 3.26 30.63 0.10 1.99 16
21 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16
22 C -0.14 -2.34 9.57 71.98 0.69 -1.65 16
23 O -0.38 -9.91 10.05 -148.98 -1.50 -11.40 16
24 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16
25 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16
26 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16
27 H 0.06 2.40 7.75 -2.39 -0.02 2.38 16
28 H 0.08 2.34 8.14 -2.38 -0.02 2.32 16
29 H 0.41 13.97 8.84 -96.74 -0.86 13.12 16
30 H 0.30 15.95 8.31 -92.71 -0.77 15.18 16
31 H 0.08 2.00 8.14 -2.39 -0.02 1.98 16
32 H 0.09 2.14 8.14 -2.39 -0.02 2.12 16
33 H 0.09 1.22 8.14 -2.38 -0.02 1.20 16
34 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16
35 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16
Total: -1.00 -74.45 303.48 -1.58 -76.03
By element:
Atomic # 1 Polarization: 28.53 SS G_CDS: 0.22 Total: 28.75 kcal
Atomic # 6 Polarization: -57.90 SS G_CDS: 3.12 Total: -54.78 kcal
Atomic # 7 Polarization: -97.13 SS G_CDS: -0.64 Total: -97.77 kcal
Atomic # 8 Polarization: -134.44 SS G_CDS: -6.03 Total: -140.47 kcal
Atomic # 14 Polarization: 40.78 SS G_CDS: 2.03 Total: 42.81 kcal
Atomic # 16 Polarization: 145.71 SS G_CDS: -0.28 Total: 145.43 kcal
Total: -74.45 -1.58 -76.03 kcal
The number of atoms in the molecule is 35
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000724519309.mol2 35
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -110.650 kcal
(2) G-P(sol) polarization free energy of solvation -74.448 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -185.099 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.584 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.032 kcal
(6) G-S(sol) free energy of system = (1) + (5) -186.683 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.46 seconds