Wall clock time and date at job start Mon Mar 30 2020 05:09:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.36932 * 119.99887 * 2 1 4 4 H 1.08002 * 119.99975 * 201.14287 * 3 2 1 5 5 C 1.38815 * 120.00088 * 21.14060 * 3 2 1 6 6 N 1.31615 * 119.99809 * 12.09151 * 5 3 2 7 7 Si 1.86802 * 119.99877 * 192.08315 * 5 3 2 8 8 H 1.48503 * 109.46977 * 90.00574 * 7 5 3 9 9 H 1.48497 * 109.47118 * 210.00236 * 7 5 3 10 10 H 1.48496 * 109.47255 * 330.00354 * 7 5 3 11 11 C 1.46497 * 119.99976 * 180.02562 * 2 1 3 12 12 C 1.50700 * 109.47238 * 272.12369 * 11 2 1 13 13 C 1.35319 * 126.12817 * 265.33864 * 12 11 2 14 14 C 1.39865 * 107.92406 * 180.14128 * 13 12 11 15 15 C 1.50701 * 125.90272 * 179.85938 * 14 13 12 16 16 F 1.39900 * 109.47143 * 184.71755 * 15 14 13 17 17 F 1.39901 * 109.46480 * 64.71688 * 15 14 13 18 18 F 1.39899 * 109.47239 * 304.71964 * 15 14 13 19 19 N 1.30843 * 108.20047 * 359.59988 * 14 13 12 20 20 N 1.34943 * 126.12829 * 85.03914 * 12 11 2 21 21 C 1.46508 * 126.03820 * 0.02562 * 20 12 11 22 22 H 1.08996 * 109.46626 * 274.57467 * 1 2 3 23 23 H 1.08992 * 109.47416 * 34.57476 * 1 2 3 24 24 H 1.09004 * 109.46892 * 154.57886 * 1 2 3 25 25 H 0.96997 * 119.99593 * 180.02562 * 6 5 3 26 26 H 1.08997 * 109.47200 * 152.12465 * 11 2 1 27 27 H 1.09001 * 109.47431 * 32.12106 * 11 2 1 28 28 H 1.08004 * 126.03634 * 0.02562 * 13 12 11 29 29 H 1.08993 * 109.47182 * 265.98894 * 21 20 12 30 30 H 1.08998 * 109.46657 * 25.99339 * 21 20 12 31 31 H 1.09007 * 109.46670 * 145.98619 * 21 20 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1752 1.2174 -0.3374 5 6 1.5257 2.3476 0.4336 6 7 0.3717 2.2792 1.0628 7 14 2.3239 4.0079 0.1242 8 1 1.8624 4.5433 -1.1819 9 1 1.9435 4.9496 1.2074 10 1 3.8004 3.8506 0.1009 11 6 2.1975 -1.2687 -0.0006 12 6 2.4031 -1.7307 1.4190 13 6 3.4975 -1.5030 2.1816 14 6 3.2861 -2.1019 3.4277 15 6 4.2511 -2.0979 4.5853 16 9 3.7394 -2.8861 5.6217 17 9 4.4281 -0.7868 5.0401 18 9 5.4815 -2.6170 4.1685 19 7 2.1035 -2.6616 3.4168 20 7 1.5265 -2.4408 2.1595 21 6 0.2049 -2.9002 1.7251 22 1 -0.3632 0.0820 1.0244 23 1 -0.3634 0.8461 -0.5831 24 1 -0.3633 -0.9282 -0.4412 25 1 -0.0645 3.0910 1.3654 26 1 3.1659 -1.1290 -0.4810 27 1 1.6255 -2.0183 -0.5473 28 1 4.3794 -0.9570 1.8805 29 1 -0.5494 -2.1729 2.0251 30 1 0.1958 -3.0067 0.6403 31 1 -0.0148 -3.8630 2.1865 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000824566483.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:09:48 Heat of formation + Delta-G solvation = -63.829305 kcal Electronic energy + Delta-G solvation = -20344.289864 eV Core-core repulsion = 16634.044211 eV Total energy + Delta-G solvation = -3710.245653 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 263.094 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -51.22935 -48.74602 -48.73215 -42.38229 -37.56407 -34.72804 -33.55060 -31.60352 -29.31169 -28.02204 -27.55431 -26.05111 -23.54437 -22.10387 -21.06597 -19.61453 -19.36768 -18.93174 -18.29992 -17.32264 -16.93191 -16.44552 -15.60473 -15.57887 -15.50287 -15.16268 -15.13139 -14.98314 -14.88534 -14.88280 -14.67776 -13.83527 -13.72472 -13.32905 -13.15790 -13.13972 -12.83224 -12.51925 -12.28857 -12.02757 -11.99111 -11.80622 -10.67077 -10.51512 -9.65369 -8.92131 -7.86791 -5.33886 0.55973 1.06030 1.37776 1.49006 1.49978 1.57034 1.81581 2.51147 2.63797 2.92625 3.30325 3.32137 3.74693 3.76512 3.93558 4.23541 4.36228 4.55438 4.60220 4.62783 4.80616 4.89631 5.08018 5.29091 5.33440 5.62546 5.73488 5.97949 6.28329 6.38321 7.11334 7.79844 8.19834 9.16219 Molecular weight = 263.09amu Principal moments of inertia in cm(-1) A = 0.020182 B = 0.006963 C = 0.005794 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1387.013458 B = 4020.508820 C = 4831.756325 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.174 3.826 2 N -0.600 5.600 3 C -0.260 4.260 4 H 0.082 0.918 5 C -0.050 4.050 6 N -0.937 5.937 7 Si 0.964 3.036 8 H -0.283 1.283 9 H -0.303 1.303 10 H -0.266 1.266 11 C 0.201 3.799 12 C 0.094 3.906 13 C -0.249 4.249 14 C -0.038 4.038 15 C 0.565 3.435 16 F -0.171 7.171 17 F -0.173 7.173 18 F -0.162 7.162 19 N -0.282 5.282 20 N -0.346 5.346 21 C 0.092 3.908 22 H -0.002 1.002 23 H 0.021 0.979 24 H 0.044 0.956 25 H 0.246 0.754 26 H 0.093 0.907 27 H 0.092 0.908 28 H 0.157 0.843 29 H 0.071 0.929 30 H 0.117 0.883 31 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.586 -11.202 0.276 11.765 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 N -0.321 5.321 3 C -0.390 4.390 4 H 0.099 0.901 5 C -0.245 4.245 6 N -0.583 5.583 7 Si 0.793 3.207 8 H -0.210 1.210 9 H -0.230 1.230 10 H -0.191 1.191 11 C 0.072 3.928 12 C -0.038 4.038 13 C -0.279 4.279 14 C -0.202 4.202 15 C 0.509 3.491 16 F -0.153 7.153 17 F -0.154 7.154 18 F -0.143 7.143 19 N -0.107 5.107 20 N -0.130 5.130 21 C -0.047 4.047 22 H 0.016 0.984 23 H 0.040 0.960 24 H 0.063 0.937 25 H 0.055 0.945 26 H 0.111 0.889 27 H 0.110 0.890 28 H 0.175 0.825 29 H 0.090 0.910 30 H 0.135 0.865 31 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 2.490 -11.782 0.946 12.079 hybrid contribution 0.770 1.779 0.205 1.949 sum 3.261 -10.003 1.151 10.584 Atomic orbital electron populations 1.20674 0.81973 0.96889 0.97474 1.44337 1.02449 1.01024 1.84303 1.19634 0.98008 0.85712 1.35645 0.90054 1.25752 0.98301 1.01794 0.98642 1.70229 1.18850 1.27184 1.42040 0.85303 0.78695 0.80012 0.76700 1.20979 1.23022 1.19079 1.20022 0.99196 0.87599 0.85998 1.23181 0.88726 0.92276 0.99597 1.21069 1.03222 1.10962 0.92638 1.22025 0.95883 1.05945 0.96385 1.16734 0.78634 0.73713 0.80062 1.93194 1.86970 1.74549 1.60564 1.93229 1.95517 1.36942 1.89727 1.93215 1.44348 1.86663 1.90122 1.77076 1.07970 1.23716 1.01974 1.48750 1.15561 1.40814 1.07887 1.22285 0.77920 1.01707 1.02786 0.98366 0.96029 0.93749 0.94483 0.88912 0.88999 0.82523 0.91044 0.86471 0.87310 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.17 7.61 8.91 127.77 1.14 8.75 16 2 N -0.60 -26.66 2.91 -731.32 -2.13 -28.78 16 3 C -0.26 -13.18 9.68 84.04 0.81 -12.36 16 4 H 0.08 3.94 7.83 -2.91 -0.02 3.92 16 5 C -0.05 -2.66 5.12 84.86 0.43 -2.23 16 6 N -0.94 -53.75 10.55 21.65 0.23 -53.52 16 7 Si 0.96 43.88 29.57 68.60 2.03 45.91 16 8 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 9 H -0.30 -14.30 7.11 99.48 0.71 -13.59 16 10 H -0.27 -11.50 7.11 99.48 0.71 -10.79 16 11 C 0.20 6.81 5.86 85.63 0.50 7.32 16 12 C 0.09 3.41 6.51 41.41 0.27 3.68 16 13 C -0.25 -9.34 10.65 21.99 0.23 -9.10 16 14 C -0.04 -1.41 6.51 43.10 0.28 -1.13 16 15 C 0.56 18.68 3.51 71.24 0.25 18.93 16 16 F -0.17 -5.56 17.14 44.97 0.77 -4.79 16 17 F -0.17 -5.96 17.30 44.97 0.78 -5.18 16 18 F -0.16 -4.85 17.30 44.97 0.78 -4.07 16 19 N -0.28 -10.71 12.35 -47.38 -0.59 -11.29 16 20 N -0.35 -11.98 4.01 -356.02 -1.43 -13.41 16 21 C 0.09 2.29 11.22 127.77 1.43 3.72 16 22 H 0.00 -0.10 7.42 -2.39 -0.02 -0.12 16 23 H 0.02 1.04 7.15 -2.39 -0.02 1.03 16 24 H 0.04 1.49 7.86 -2.38 -0.02 1.47 16 25 H 0.25 13.96 8.31 -92.71 -0.77 13.19 16 26 H 0.09 2.94 8.00 -2.39 -0.02 2.92 16 27 H 0.09 2.44 6.94 -2.39 -0.02 2.42 16 28 H 0.16 5.51 8.06 -2.91 -0.02 5.49 16 29 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 30 H 0.12 2.25 7.03 -2.39 -0.02 2.24 16 31 H 0.11 2.13 8.14 -2.38 -0.02 2.11 16 Total: -1.00 -64.22 285.30 6.95 -57.26 By element: Atomic # 1 Polarization: -0.86 SS G_CDS: 1.16 Total: 0.30 kcal Atomic # 6 Polarization: 12.22 SS G_CDS: 5.35 Total: 17.57 kcal Atomic # 7 Polarization: -103.09 SS G_CDS: -3.91 Total: -107.00 kcal Atomic # 9 Polarization: -16.37 SS G_CDS: 2.33 Total: -14.04 kcal Atomic # 14 Polarization: 43.88 SS G_CDS: 2.03 Total: 45.91 kcal Total: -64.22 6.95 -57.26 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000824566483.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.569 kcal (2) G-P(sol) polarization free energy of solvation -64.215 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.784 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.955 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.260 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.829 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds