Wall clock time and date at job start Mon Mar 30 2020 05:09:48
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46505 * 1
3 3 C 1.36932 * 119.99887 * 2 1
4 4 H 1.08002 * 119.99975 * 201.14287 * 3 2 1
5 5 C 1.38815 * 120.00088 * 21.14060 * 3 2 1
6 6 N 1.31615 * 119.99809 * 12.09151 * 5 3 2
7 7 Si 1.86802 * 119.99877 * 192.08315 * 5 3 2
8 8 H 1.48503 * 109.46977 * 90.00574 * 7 5 3
9 9 H 1.48497 * 109.47118 * 210.00236 * 7 5 3
10 10 H 1.48496 * 109.47255 * 330.00354 * 7 5 3
11 11 C 1.46497 * 119.99976 * 180.02562 * 2 1 3
12 12 C 1.50700 * 109.47238 * 272.12369 * 11 2 1
13 13 C 1.35319 * 126.12817 * 265.33864 * 12 11 2
14 14 C 1.39865 * 107.92406 * 180.14128 * 13 12 11
15 15 C 1.50701 * 125.90272 * 179.85938 * 14 13 12
16 16 F 1.39900 * 109.47143 * 184.71755 * 15 14 13
17 17 F 1.39901 * 109.46480 * 64.71688 * 15 14 13
18 18 F 1.39899 * 109.47239 * 304.71964 * 15 14 13
19 19 N 1.30843 * 108.20047 * 359.59988 * 14 13 12
20 20 N 1.34943 * 126.12829 * 85.03914 * 12 11 2
21 21 C 1.46508 * 126.03820 * 0.02562 * 20 12 11
22 22 H 1.08996 * 109.46626 * 274.57467 * 1 2 3
23 23 H 1.08992 * 109.47416 * 34.57476 * 1 2 3
24 24 H 1.09004 * 109.46892 * 154.57886 * 1 2 3
25 25 H 0.96997 * 119.99593 * 180.02562 * 6 5 3
26 26 H 1.08997 * 109.47200 * 152.12465 * 11 2 1
27 27 H 1.09001 * 109.47431 * 32.12106 * 11 2 1
28 28 H 1.08004 * 126.03634 * 0.02562 * 13 12 11
29 29 H 1.08993 * 109.47182 * 265.98894 * 21 20 12
30 30 H 1.08998 * 109.46657 * 25.99339 * 21 20 12
31 31 H 1.09007 * 109.46670 * 145.98619 * 21 20 12
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4651 0.0000 0.0000
3 6 2.1497 1.1859 0.0000
4 1 3.1752 1.2174 -0.3374
5 6 1.5257 2.3476 0.4336
6 7 0.3717 2.2792 1.0628
7 14 2.3239 4.0079 0.1242
8 1 1.8624 4.5433 -1.1819
9 1 1.9435 4.9496 1.2074
10 1 3.8004 3.8506 0.1009
11 6 2.1975 -1.2687 -0.0006
12 6 2.4031 -1.7307 1.4190
13 6 3.4975 -1.5030 2.1816
14 6 3.2861 -2.1019 3.4277
15 6 4.2511 -2.0979 4.5853
16 9 3.7394 -2.8861 5.6217
17 9 4.4281 -0.7868 5.0401
18 9 5.4815 -2.6170 4.1685
19 7 2.1035 -2.6616 3.4168
20 7 1.5265 -2.4408 2.1595
21 6 0.2049 -2.9002 1.7251
22 1 -0.3632 0.0820 1.0244
23 1 -0.3634 0.8461 -0.5831
24 1 -0.3633 -0.9282 -0.4412
25 1 -0.0645 3.0910 1.3654
26 1 3.1659 -1.1290 -0.4810
27 1 1.6255 -2.0183 -0.5473
28 1 4.3794 -0.9570 1.8805
29 1 -0.5494 -2.1729 2.0251
30 1 0.1958 -3.0067 0.6403
31 1 -0.0148 -3.8630 2.1865
RHF calculation, no. of doubly occupied orbitals= 48
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000824566483.mol2 31
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 05:09:48
Heat of formation + Delta-G solvation = -63.829305 kcal
Electronic energy + Delta-G solvation = -20344.289864 eV
Core-core repulsion = 16634.044211 eV
Total energy + Delta-G solvation = -3710.245653 eV
No. of doubly occupied orbitals = 48
Molecular weight
(most abundant/longest-lived isotopes) = 263.094 amu
Computer time = 0.28 seconds
Orbital eigenvalues (eV)
-51.22935 -48.74602 -48.73215 -42.38229 -37.56407 -34.72804 -33.55060 -31.60352
-29.31169 -28.02204 -27.55431 -26.05111 -23.54437 -22.10387 -21.06597 -19.61453
-19.36768 -18.93174 -18.29992 -17.32264 -16.93191 -16.44552 -15.60473 -15.57887
-15.50287 -15.16268 -15.13139 -14.98314 -14.88534 -14.88280 -14.67776 -13.83527
-13.72472 -13.32905 -13.15790 -13.13972 -12.83224 -12.51925 -12.28857 -12.02757
-11.99111 -11.80622 -10.67077 -10.51512 -9.65369 -8.92131 -7.86791 -5.33886
0.55973 1.06030 1.37776 1.49006 1.49978 1.57034 1.81581 2.51147
2.63797 2.92625 3.30325 3.32137 3.74693 3.76512 3.93558 4.23541
4.36228 4.55438 4.60220 4.62783 4.80616 4.89631 5.08018 5.29091
5.33440 5.62546 5.73488 5.97949 6.28329 6.38321 7.11334 7.79844
8.19834 9.16219
Molecular weight = 263.09amu
Principal moments of inertia in cm(-1)
A = 0.020182 B = 0.006963 C = 0.005794
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1387.013458 B = 4020.508820 C = 4831.756325
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.174 3.826
2 N -0.600 5.600
3 C -0.260 4.260
4 H 0.082 0.918
5 C -0.050 4.050
6 N -0.937 5.937
7 Si 0.964 3.036
8 H -0.283 1.283
9 H -0.303 1.303
10 H -0.266 1.266
11 C 0.201 3.799
12 C 0.094 3.906
13 C -0.249 4.249
14 C -0.038 4.038
15 C 0.565 3.435
16 F -0.171 7.171
17 F -0.173 7.173
18 F -0.162 7.162
19 N -0.282 5.282
20 N -0.346 5.346
21 C 0.092 3.908
22 H -0.002 1.002
23 H 0.021 0.979
24 H 0.044 0.956
25 H 0.246 0.754
26 H 0.093 0.907
27 H 0.092 0.908
28 H 0.157 0.843
29 H 0.071 0.929
30 H 0.117 0.883
31 H 0.108 0.892
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 3.586 -11.202 0.276 11.765
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C 0.030 3.970
2 N -0.321 5.321
3 C -0.390 4.390
4 H 0.099 0.901
5 C -0.245 4.245
6 N -0.583 5.583
7 Si 0.793 3.207
8 H -0.210 1.210
9 H -0.230 1.230
10 H -0.191 1.191
11 C 0.072 3.928
12 C -0.038 4.038
13 C -0.279 4.279
14 C -0.202 4.202
15 C 0.509 3.491
16 F -0.153 7.153
17 F -0.154 7.154
18 F -0.143 7.143
19 N -0.107 5.107
20 N -0.130 5.130
21 C -0.047 4.047
22 H 0.016 0.984
23 H 0.040 0.960
24 H 0.063 0.937
25 H 0.055 0.945
26 H 0.111 0.889
27 H 0.110 0.890
28 H 0.175 0.825
29 H 0.090 0.910
30 H 0.135 0.865
31 H 0.127 0.873
Dipole moment (debyes) X Y Z Total
from point charges 2.490 -11.782 0.946 12.079
hybrid contribution 0.770 1.779 0.205 1.949
sum 3.261 -10.003 1.151 10.584
Atomic orbital electron populations
1.20674 0.81973 0.96889 0.97474 1.44337 1.02449 1.01024 1.84303
1.19634 0.98008 0.85712 1.35645 0.90054 1.25752 0.98301 1.01794
0.98642 1.70229 1.18850 1.27184 1.42040 0.85303 0.78695 0.80012
0.76700 1.20979 1.23022 1.19079 1.20022 0.99196 0.87599 0.85998
1.23181 0.88726 0.92276 0.99597 1.21069 1.03222 1.10962 0.92638
1.22025 0.95883 1.05945 0.96385 1.16734 0.78634 0.73713 0.80062
1.93194 1.86970 1.74549 1.60564 1.93229 1.95517 1.36942 1.89727
1.93215 1.44348 1.86663 1.90122 1.77076 1.07970 1.23716 1.01974
1.48750 1.15561 1.40814 1.07887 1.22285 0.77920 1.01707 1.02786
0.98366 0.96029 0.93749 0.94483 0.88912 0.88999 0.82523 0.91044
0.86471 0.87310
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.17 7.61 8.91 127.77 1.14 8.75 16
2 N -0.60 -26.66 2.91 -731.32 -2.13 -28.78 16
3 C -0.26 -13.18 9.68 84.04 0.81 -12.36 16
4 H 0.08 3.94 7.83 -2.91 -0.02 3.92 16
5 C -0.05 -2.66 5.12 84.86 0.43 -2.23 16
6 N -0.94 -53.75 10.55 21.65 0.23 -53.52 16
7 Si 0.96 43.88 29.57 68.60 2.03 45.91 16
8 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16
9 H -0.30 -14.30 7.11 99.48 0.71 -13.59 16
10 H -0.27 -11.50 7.11 99.48 0.71 -10.79 16
11 C 0.20 6.81 5.86 85.63 0.50 7.32 16
12 C 0.09 3.41 6.51 41.41 0.27 3.68 16
13 C -0.25 -9.34 10.65 21.99 0.23 -9.10 16
14 C -0.04 -1.41 6.51 43.10 0.28 -1.13 16
15 C 0.56 18.68 3.51 71.24 0.25 18.93 16
16 F -0.17 -5.56 17.14 44.97 0.77 -4.79 16
17 F -0.17 -5.96 17.30 44.97 0.78 -5.18 16
18 F -0.16 -4.85 17.30 44.97 0.78 -4.07 16
19 N -0.28 -10.71 12.35 -47.38 -0.59 -11.29 16
20 N -0.35 -11.98 4.01 -356.02 -1.43 -13.41 16
21 C 0.09 2.29 11.22 127.77 1.43 3.72 16
22 H 0.00 -0.10 7.42 -2.39 -0.02 -0.12 16
23 H 0.02 1.04 7.15 -2.39 -0.02 1.03 16
24 H 0.04 1.49 7.86 -2.38 -0.02 1.47 16
25 H 0.25 13.96 8.31 -92.71 -0.77 13.19 16
26 H 0.09 2.94 8.00 -2.39 -0.02 2.92 16
27 H 0.09 2.44 6.94 -2.39 -0.02 2.42 16
28 H 0.16 5.51 8.06 -2.91 -0.02 5.49 16
29 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16
30 H 0.12 2.25 7.03 -2.39 -0.02 2.24 16
31 H 0.11 2.13 8.14 -2.38 -0.02 2.11 16
Total: -1.00 -64.22 285.30 6.95 -57.26
By element:
Atomic # 1 Polarization: -0.86 SS G_CDS: 1.16 Total: 0.30 kcal
Atomic # 6 Polarization: 12.22 SS G_CDS: 5.35 Total: 17.57 kcal
Atomic # 7 Polarization: -103.09 SS G_CDS: -3.91 Total: -107.00 kcal
Atomic # 9 Polarization: -16.37 SS G_CDS: 2.33 Total: -14.04 kcal
Atomic # 14 Polarization: 43.88 SS G_CDS: 2.03 Total: 45.91 kcal
Total: -64.22 6.95 -57.26 kcal
The number of atoms in the molecule is 31
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000824566483.mol2 31
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -6.569 kcal
(2) G-P(sol) polarization free energy of solvation -64.215 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.784 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.955 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.260 kcal
(6) G-S(sol) free energy of system = (1) + (5) -63.829 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.28 seconds