Wall clock time and date at job start Mon Mar 30 2020 05:11:19
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46497 * 1
3 3 C 1.35040 * 126.40082 * 2 1
4 4 N 1.30500 * 108.70316 * 180.26995 * 3 2 1
5 5 C 1.34120 * 109.25187 * 359.77143 * 4 3 2
6 6 C 1.34665 * 108.02651 * 359.97438 * 5 4 3
7 7 C 1.50697 * 126.59644 * 179.97438 * 6 5 4
8 8 N 1.46901 * 109.47274 * 95.02712 * 7 6 5
9 9 C 1.46896 * 111.00541 * 180.02562 * 8 7 6
10 10 H 1.09001 * 109.46877 * 324.99634 * 9 8 7
11 11 C 1.50697 * 109.47181 * 205.00371 * 9 8 7
12 12 H 1.07998 * 120.00039 * 359.97438 * 11 9 8
13 13 C 1.37881 * 120.00021 * 180.02562 * 11 9 8
14 14 N 1.31519 * 119.99891 * 359.97438 * 13 11 9
15 15 Si 1.86800 * 120.00032 * 180.02562 * 13 11 9
16 16 H 1.48501 * 109.47104 * 359.97438 * 15 13 11
17 17 H 1.48494 * 109.47457 * 119.99350 * 15 13 11
18 18 H 1.48496 * 109.46986 * 239.99711 * 15 13 11
19 19 C 1.52997 * 109.47306 * 84.99802 * 9 8 7
20 20 F 1.39905 * 109.47157 * 180.02562 * 19 9 8
21 21 F 1.39900 * 109.47010 * 60.00542 * 19 9 8
22 22 F 1.39897 * 109.47422 * 300.00234 * 19 9 8
23 23 H 1.09000 * 109.47453 * 270.11303 * 1 2 3
24 24 H 1.09001 * 109.47342 * 30.11641 * 1 2 3
25 25 H 1.09002 * 109.47125 * 150.11444 * 1 2 3
26 26 H 1.08008 * 125.64909 * 0.07997 * 3 2 1
27 27 H 1.08014 * 125.98835 * 180.02562 * 5 4 3
28 28 H 1.09008 * 109.47288 * 335.03117 * 7 6 5
29 29 H 1.09001 * 109.47726 * 215.02901 * 7 6 5
30 30 H 1.00899 * 110.99633 * 56.04609 * 8 7 6
31 31 H 0.97001 * 120.00022 * 180.02562 * 14 13 11
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4650 0.0000 0.0000
3 6 2.2663 1.0869 0.0000
4 7 3.5096 0.6902 -0.0058
5 6 3.5460 -0.6505 -0.0047
6 6 2.2772 -1.1018 0.0027
7 6 1.8362 -2.5428 0.0060
8 7 1.5846 -2.9748 1.3874
9 6 1.1524 -4.3781 1.4298
10 1 0.5430 -4.5972 0.5531
11 6 0.3415 -4.6164 2.6774
12 1 0.1651 -3.8065 3.3698
13 6 -0.1745 -5.8687 2.9355
14 7 0.0407 -6.8551 2.0926
15 14 -1.1804 -6.1640 4.4816
16 1 -1.2766 -4.9018 5.2581
17 1 -2.5429 -6.6198 4.1063
18 1 -0.5207 -7.2051 5.3100
19 6 2.3809 -5.2900 1.4380
20 9 1.9692 -6.6266 1.4778
21 9 3.1630 -5.0088 2.5634
22 9 3.1337 -5.0688 0.2798
23 1 -0.3634 0.0020 1.0276
24 1 -0.3634 0.8889 -0.5156
25 1 -0.3633 -0.8910 -0.5121
26 1 1.9335 2.1144 0.0012
27 1 4.4368 -1.2613 -0.0081
28 1 2.6184 -3.1632 -0.4318
29 1 0.9219 -2.6445 -0.5786
30 1 0.9095 -2.3744 1.8366
31 1 -0.3226 -7.7360 2.2740
RHF calculation, no. of doubly occupied orbitals= 48
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000922646667.mol2 31
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 05:11:19
Heat of formation + Delta-G solvation = -89.362859 kcal
Electronic energy + Delta-G solvation = -20624.349855 eV
Core-core repulsion = 16912.996984 eV
Total energy + Delta-G solvation = -3711.352871 eV
No. of doubly occupied orbitals = 48
Molecular weight
(most abundant/longest-lived isotopes) = 263.094 amu
Computer time = 0.27 seconds
Orbital eigenvalues (eV)
-50.32197 -47.96495 -47.62645 -42.96156 -37.62560 -35.00385 -34.60148 -31.90683
-29.12423 -27.75855 -26.52990 -25.59495 -22.74129 -22.30961 -20.96258 -19.24823
-18.76881 -18.59315 -17.90135 -17.33997 -16.79277 -16.54997 -15.95081 -15.49305
-15.20757 -14.96533 -14.62242 -14.48900 -14.37918 -14.22303 -14.10640 -13.91026
-13.87326 -13.70391 -13.36049 -12.93839 -12.80574 -12.56428 -12.52084 -12.03617
-11.35596 -10.94410 -10.66156 -10.46007 -9.49991 -9.24879 -8.19506 -6.46352
1.07852 1.42102 1.46122 1.56965 1.95945 2.21626 2.35616 2.57994
2.96756 3.28885 3.73815 3.88060 3.93330 3.98740 4.04836 4.09234
4.39613 4.42057 4.51158 4.67560 4.75040 4.85190 4.95892 5.40798
5.52762 5.67996 5.77373 6.02514 6.37498 6.46282 6.67003 7.14479
7.24279 8.73049
Molecular weight = 263.09amu
Principal moments of inertia in cm(-1)
A = 0.024877 B = 0.006635 C = 0.005696
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1125.275414 B = 4219.280690 C = 4914.874457
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.063 3.937
2 N -0.457 5.457
3 C 0.187 3.813
4 N -0.535 5.535
5 C -0.035 4.035
6 C -0.021 4.021
7 C 0.132 3.868
8 N -0.675 5.675
9 C 0.195 3.805
10 H 0.028 0.972
11 C -0.553 4.553
12 H 0.077 0.923
13 C 0.017 3.983
14 N -0.873 5.873
15 Si 0.972 3.028
16 H -0.263 1.263
17 H -0.273 1.273
18 H -0.285 1.285
19 C 0.434 3.566
20 F -0.155 7.155
21 F -0.205 7.205
22 F -0.220 7.220
23 H 0.085 0.915
24 H 0.122 0.878
25 H 0.081 0.919
26 H 0.246 0.754
27 H 0.162 0.838
28 H 0.088 0.912
29 H 0.044 0.956
30 H 0.351 0.649
31 H 0.266 0.734
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -2.950 10.754 -4.207 11.918
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.078 4.078
2 N -0.140 5.140
3 C -0.096 4.096
4 N -0.254 5.254
5 C -0.183 4.183
6 C -0.136 4.136
7 C 0.002 3.998
8 N -0.308 5.308
9 C 0.084 3.916
10 H 0.045 0.955
11 C -0.590 4.590
12 H 0.095 0.905
13 C -0.188 4.188
14 N -0.508 5.508
15 Si 0.797 3.203
16 H -0.187 1.187
17 H -0.198 1.198
18 H -0.211 1.211
19 C 0.378 3.622
20 F -0.137 7.137
21 F -0.187 7.187
22 F -0.202 7.202
23 H 0.104 0.896
24 H 0.141 0.859
25 H 0.100 0.900
26 H 0.262 0.738
27 H 0.180 0.820
28 H 0.107 0.893
29 H 0.062 0.938
30 H 0.171 0.829
31 H 0.076 0.924
Dipole moment (debyes) X Y Z Total
from point charges -1.806 10.892 -4.139 11.791
hybrid contribution -1.474 -1.257 0.343 1.968
sum -3.280 9.635 -3.796 10.863
Atomic orbital electron populations
1.22351 0.74443 1.06141 1.04859 1.45495 1.08900 1.05908 1.53727
1.25682 0.84934 0.94782 1.04157 1.70225 1.21535 1.11918 1.21699
1.22141 0.96407 0.91340 1.08388 1.21020 0.91559 0.89548 1.11508
1.20434 1.00564 0.88711 0.90092 1.60174 1.51863 1.02619 1.16150
1.19882 0.87287 0.84941 0.99527 0.95502 1.21191 1.33452 0.97434
1.06877 0.90483 1.25888 0.97017 0.95497 1.00421 1.70505 1.41050
1.02243 1.37011 0.85278 0.78050 0.78409 0.78602 1.18652 1.19840
1.21096 1.22735 0.85599 0.82549 0.71316 1.93373 1.88576 1.35970
1.95740 1.92986 1.77609 1.93936 1.54122 1.92962 1.80343 1.94800
1.52067 0.89624 0.85931 0.90028 0.73842 0.82030 0.89344 0.93837
0.82879 0.92398
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.06 0.98 11.01 127.77 1.41 2.38 16
2 N -0.46 -11.03 3.15 -537.89 -1.70 -12.72 16
3 C 0.19 4.42 12.56 180.26 2.26 6.68 16
4 N -0.53 -17.04 11.25 -200.30 -2.25 -19.29 16
5 C -0.03 -1.16 11.79 83.52 0.98 -0.18 16
6 C -0.02 -0.65 6.46 40.95 0.26 -0.39 16
7 C 0.13 4.49 5.63 85.56 0.48 4.97 16
8 N -0.68 -26.81 6.21 -499.47 -3.10 -29.91 16
9 C 0.19 9.18 2.26 44.17 0.10 9.28 16
10 H 0.03 1.35 7.80 -2.39 -0.02 1.34 16
11 C -0.55 -27.82 8.33 25.60 0.21 -27.61 16
12 H 0.08 3.77 7.62 -2.91 -0.02 3.75 16
13 C 0.02 0.85 5.20 84.65 0.44 1.29 16
14 N -0.87 -47.19 9.50 21.45 0.20 -46.98 16
15 Si 0.97 40.71 29.54 68.60 2.03 42.74 16
16 H -0.26 -10.57 7.11 99.48 0.71 -9.86 16
17 H -0.27 -10.99 7.11 99.48 0.71 -10.28 16
18 H -0.28 -12.11 7.11 99.48 0.71 -11.40 16
19 C 0.43 21.72 2.81 71.98 0.20 21.92 16
20 F -0.16 -8.49 12.91 44.97 0.58 -7.91 16
21 F -0.20 -10.56 16.94 44.97 0.76 -9.80 16
22 F -0.22 -10.12 15.04 44.97 0.68 -9.44 16
23 H 0.09 1.25 8.14 -2.39 -0.02 1.23 16
24 H 0.12 0.99 8.14 -2.39 -0.02 0.97 16
25 H 0.08 1.35 7.30 -2.39 -0.02 1.34 16
26 H 0.25 3.19 8.06 -2.91 -0.02 3.17 16
27 H 0.16 5.35 8.06 -2.90 -0.02 5.33 16
28 H 0.09 3.24 6.03 -2.38 -0.01 3.23 16
29 H 0.04 1.37 7.28 -2.39 -0.02 1.36 16
30 H 0.35 13.09 8.22 -89.69 -0.74 12.35 16
31 H 0.27 13.67 8.31 -92.71 -0.77 12.90 16
Total: -1.00 -63.54 276.87 3.99 -59.54
By element:
Atomic # 1 Polarization: 14.98 SS G_CDS: 0.44 Total: 15.42 kcal
Atomic # 6 Polarization: 12.00 SS G_CDS: 6.36 Total: 18.36 kcal
Atomic # 7 Polarization: -102.06 SS G_CDS: -6.85 Total: -108.91 kcal
Atomic # 9 Polarization: -29.17 SS G_CDS: 2.02 Total: -27.15 kcal
Atomic # 14 Polarization: 40.71 SS G_CDS: 2.03 Total: 42.74 kcal
Total: -63.54 3.99 -59.54 kcal
The number of atoms in the molecule is 31
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000922646667.mol2 31
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -29.820 kcal
(2) G-P(sol) polarization free energy of solvation -63.537 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.356 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.993 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.543 kcal
(6) G-S(sol) free energy of system = (1) + (5) -89.363 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.27 seconds