Wall clock time and date at job start Mon Mar 30 2020 05:11:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.35040 * 126.40082 * 2 1 4 4 N 1.30500 * 108.70316 * 180.26995 * 3 2 1 5 5 C 1.34120 * 109.25187 * 359.77143 * 4 3 2 6 6 C 1.34665 * 108.02651 * 359.97438 * 5 4 3 7 7 C 1.50697 * 126.59644 * 179.97438 * 6 5 4 8 8 N 1.46901 * 109.47274 * 95.02712 * 7 6 5 9 9 C 1.46896 * 111.00541 * 180.02562 * 8 7 6 10 10 H 1.09001 * 109.46877 * 324.99634 * 9 8 7 11 11 C 1.50697 * 109.47181 * 205.00371 * 9 8 7 12 12 H 1.07998 * 120.00039 * 359.97438 * 11 9 8 13 13 C 1.37881 * 120.00021 * 180.02562 * 11 9 8 14 14 N 1.31519 * 119.99891 * 359.97438 * 13 11 9 15 15 Si 1.86800 * 120.00032 * 180.02562 * 13 11 9 16 16 H 1.48501 * 109.47104 * 359.97438 * 15 13 11 17 17 H 1.48494 * 109.47457 * 119.99350 * 15 13 11 18 18 H 1.48496 * 109.46986 * 239.99711 * 15 13 11 19 19 C 1.52997 * 109.47306 * 84.99802 * 9 8 7 20 20 F 1.39905 * 109.47157 * 180.02562 * 19 9 8 21 21 F 1.39900 * 109.47010 * 60.00542 * 19 9 8 22 22 F 1.39897 * 109.47422 * 300.00234 * 19 9 8 23 23 H 1.09000 * 109.47453 * 270.11303 * 1 2 3 24 24 H 1.09001 * 109.47342 * 30.11641 * 1 2 3 25 25 H 1.09002 * 109.47125 * 150.11444 * 1 2 3 26 26 H 1.08008 * 125.64909 * 0.07997 * 3 2 1 27 27 H 1.08014 * 125.98835 * 180.02562 * 5 4 3 28 28 H 1.09008 * 109.47288 * 335.03117 * 7 6 5 29 29 H 1.09001 * 109.47726 * 215.02901 * 7 6 5 30 30 H 1.00899 * 110.99633 * 56.04609 * 8 7 6 31 31 H 0.97001 * 120.00022 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2663 1.0869 0.0000 4 7 3.5096 0.6902 -0.0058 5 6 3.5460 -0.6505 -0.0047 6 6 2.2772 -1.1018 0.0027 7 6 1.8362 -2.5428 0.0060 8 7 1.5846 -2.9748 1.3874 9 6 1.1524 -4.3781 1.4298 10 1 0.5430 -4.5972 0.5531 11 6 0.3415 -4.6164 2.6774 12 1 0.1651 -3.8065 3.3698 13 6 -0.1745 -5.8687 2.9355 14 7 0.0407 -6.8551 2.0926 15 14 -1.1804 -6.1640 4.4816 16 1 -1.2766 -4.9018 5.2581 17 1 -2.5429 -6.6198 4.1063 18 1 -0.5207 -7.2051 5.3100 19 6 2.3809 -5.2900 1.4380 20 9 1.9692 -6.6266 1.4778 21 9 3.1630 -5.0088 2.5634 22 9 3.1337 -5.0688 0.2798 23 1 -0.3634 0.0020 1.0276 24 1 -0.3634 0.8889 -0.5156 25 1 -0.3633 -0.8910 -0.5121 26 1 1.9335 2.1144 0.0012 27 1 4.4368 -1.2613 -0.0081 28 1 2.6184 -3.1632 -0.4318 29 1 0.9219 -2.6445 -0.5786 30 1 0.9095 -2.3744 1.8366 31 1 -0.3226 -7.7360 2.2740 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000922646667.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:11:19 Heat of formation + Delta-G solvation = -89.362859 kcal Electronic energy + Delta-G solvation = -20624.349855 eV Core-core repulsion = 16912.996984 eV Total energy + Delta-G solvation = -3711.352871 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 263.094 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -50.32197 -47.96495 -47.62645 -42.96156 -37.62560 -35.00385 -34.60148 -31.90683 -29.12423 -27.75855 -26.52990 -25.59495 -22.74129 -22.30961 -20.96258 -19.24823 -18.76881 -18.59315 -17.90135 -17.33997 -16.79277 -16.54997 -15.95081 -15.49305 -15.20757 -14.96533 -14.62242 -14.48900 -14.37918 -14.22303 -14.10640 -13.91026 -13.87326 -13.70391 -13.36049 -12.93839 -12.80574 -12.56428 -12.52084 -12.03617 -11.35596 -10.94410 -10.66156 -10.46007 -9.49991 -9.24879 -8.19506 -6.46352 1.07852 1.42102 1.46122 1.56965 1.95945 2.21626 2.35616 2.57994 2.96756 3.28885 3.73815 3.88060 3.93330 3.98740 4.04836 4.09234 4.39613 4.42057 4.51158 4.67560 4.75040 4.85190 4.95892 5.40798 5.52762 5.67996 5.77373 6.02514 6.37498 6.46282 6.67003 7.14479 7.24279 8.73049 Molecular weight = 263.09amu Principal moments of inertia in cm(-1) A = 0.024877 B = 0.006635 C = 0.005696 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1125.275414 B = 4219.280690 C = 4914.874457 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.063 3.937 2 N -0.457 5.457 3 C 0.187 3.813 4 N -0.535 5.535 5 C -0.035 4.035 6 C -0.021 4.021 7 C 0.132 3.868 8 N -0.675 5.675 9 C 0.195 3.805 10 H 0.028 0.972 11 C -0.553 4.553 12 H 0.077 0.923 13 C 0.017 3.983 14 N -0.873 5.873 15 Si 0.972 3.028 16 H -0.263 1.263 17 H -0.273 1.273 18 H -0.285 1.285 19 C 0.434 3.566 20 F -0.155 7.155 21 F -0.205 7.205 22 F -0.220 7.220 23 H 0.085 0.915 24 H 0.122 0.878 25 H 0.081 0.919 26 H 0.246 0.754 27 H 0.162 0.838 28 H 0.088 0.912 29 H 0.044 0.956 30 H 0.351 0.649 31 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.950 10.754 -4.207 11.918 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 N -0.140 5.140 3 C -0.096 4.096 4 N -0.254 5.254 5 C -0.183 4.183 6 C -0.136 4.136 7 C 0.002 3.998 8 N -0.308 5.308 9 C 0.084 3.916 10 H 0.045 0.955 11 C -0.590 4.590 12 H 0.095 0.905 13 C -0.188 4.188 14 N -0.508 5.508 15 Si 0.797 3.203 16 H -0.187 1.187 17 H -0.198 1.198 18 H -0.211 1.211 19 C 0.378 3.622 20 F -0.137 7.137 21 F -0.187 7.187 22 F -0.202 7.202 23 H 0.104 0.896 24 H 0.141 0.859 25 H 0.100 0.900 26 H 0.262 0.738 27 H 0.180 0.820 28 H 0.107 0.893 29 H 0.062 0.938 30 H 0.171 0.829 31 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -1.806 10.892 -4.139 11.791 hybrid contribution -1.474 -1.257 0.343 1.968 sum -3.280 9.635 -3.796 10.863 Atomic orbital electron populations 1.22351 0.74443 1.06141 1.04859 1.45495 1.08900 1.05908 1.53727 1.25682 0.84934 0.94782 1.04157 1.70225 1.21535 1.11918 1.21699 1.22141 0.96407 0.91340 1.08388 1.21020 0.91559 0.89548 1.11508 1.20434 1.00564 0.88711 0.90092 1.60174 1.51863 1.02619 1.16150 1.19882 0.87287 0.84941 0.99527 0.95502 1.21191 1.33452 0.97434 1.06877 0.90483 1.25888 0.97017 0.95497 1.00421 1.70505 1.41050 1.02243 1.37011 0.85278 0.78050 0.78409 0.78602 1.18652 1.19840 1.21096 1.22735 0.85599 0.82549 0.71316 1.93373 1.88576 1.35970 1.95740 1.92986 1.77609 1.93936 1.54122 1.92962 1.80343 1.94800 1.52067 0.89624 0.85931 0.90028 0.73842 0.82030 0.89344 0.93837 0.82879 0.92398 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.98 11.01 127.77 1.41 2.38 16 2 N -0.46 -11.03 3.15 -537.89 -1.70 -12.72 16 3 C 0.19 4.42 12.56 180.26 2.26 6.68 16 4 N -0.53 -17.04 11.25 -200.30 -2.25 -19.29 16 5 C -0.03 -1.16 11.79 83.52 0.98 -0.18 16 6 C -0.02 -0.65 6.46 40.95 0.26 -0.39 16 7 C 0.13 4.49 5.63 85.56 0.48 4.97 16 8 N -0.68 -26.81 6.21 -499.47 -3.10 -29.91 16 9 C 0.19 9.18 2.26 44.17 0.10 9.28 16 10 H 0.03 1.35 7.80 -2.39 -0.02 1.34 16 11 C -0.55 -27.82 8.33 25.60 0.21 -27.61 16 12 H 0.08 3.77 7.62 -2.91 -0.02 3.75 16 13 C 0.02 0.85 5.20 84.65 0.44 1.29 16 14 N -0.87 -47.19 9.50 21.45 0.20 -46.98 16 15 Si 0.97 40.71 29.54 68.60 2.03 42.74 16 16 H -0.26 -10.57 7.11 99.48 0.71 -9.86 16 17 H -0.27 -10.99 7.11 99.48 0.71 -10.28 16 18 H -0.28 -12.11 7.11 99.48 0.71 -11.40 16 19 C 0.43 21.72 2.81 71.98 0.20 21.92 16 20 F -0.16 -8.49 12.91 44.97 0.58 -7.91 16 21 F -0.20 -10.56 16.94 44.97 0.76 -9.80 16 22 F -0.22 -10.12 15.04 44.97 0.68 -9.44 16 23 H 0.09 1.25 8.14 -2.39 -0.02 1.23 16 24 H 0.12 0.99 8.14 -2.39 -0.02 0.97 16 25 H 0.08 1.35 7.30 -2.39 -0.02 1.34 16 26 H 0.25 3.19 8.06 -2.91 -0.02 3.17 16 27 H 0.16 5.35 8.06 -2.90 -0.02 5.33 16 28 H 0.09 3.24 6.03 -2.38 -0.01 3.23 16 29 H 0.04 1.37 7.28 -2.39 -0.02 1.36 16 30 H 0.35 13.09 8.22 -89.69 -0.74 12.35 16 31 H 0.27 13.67 8.31 -92.71 -0.77 12.90 16 Total: -1.00 -63.54 276.87 3.99 -59.54 By element: Atomic # 1 Polarization: 14.98 SS G_CDS: 0.44 Total: 15.42 kcal Atomic # 6 Polarization: 12.00 SS G_CDS: 6.36 Total: 18.36 kcal Atomic # 7 Polarization: -102.06 SS G_CDS: -6.85 Total: -108.91 kcal Atomic # 9 Polarization: -29.17 SS G_CDS: 2.02 Total: -27.15 kcal Atomic # 14 Polarization: 40.71 SS G_CDS: 2.03 Total: 42.74 kcal Total: -63.54 3.99 -59.54 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000922646667.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.820 kcal (2) G-P(sol) polarization free energy of solvation -63.537 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.356 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.993 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.543 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.363 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds