Wall clock time and date at job start Mon Mar 30 2020 05:01:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08997 * 109.47059 * 2 1 4 4 N 1.46907 * 109.47019 * 239.99636 * 2 1 3 5 5 C 1.50706 * 109.46849 * 120.00449 * 2 1 3 6 6 C 1.38289 * 120.06095 * 74.99562 * 5 2 1 7 7 F 1.35099 * 119.98154 * 0.04674 * 6 5 2 8 8 C 1.38539 * 120.03716 * 180.02562 * 6 5 2 9 9 C 1.38310 * 120.15561 * 359.97438 * 8 6 5 10 10 C 1.38046 * 120.11525 * 0.02562 * 9 8 6 11 11 C 1.39028 * 120.05032 * 255.30059 * 5 2 1 12 12 N 1.39288 * 120.07969 * 359.97120 * 11 5 2 13 13 C 1.36857 * 120.00097 * 90.28397 * 12 11 5 14 14 H 1.07999 * 119.99770 * 321.49942 * 13 12 11 15 15 C 1.38790 * 120.00072 * 141.50694 * 13 12 11 16 16 N 1.31597 * 119.99948 * 156.72795 * 15 13 12 17 17 Si 1.86797 * 120.00086 * 336.72513 * 15 13 12 18 18 H 1.48509 * 109.46972 * 95.81219 * 17 15 13 19 19 H 1.48498 * 109.47207 * 215.81327 * 17 15 13 20 20 H 1.48503 * 109.47152 * 335.81643 * 17 15 13 21 21 C 1.46499 * 120.00157 * 270.28433 * 12 11 5 22 22 C 1.47194 * 109.47426 * 89.39480 * 21 12 11 23 23 N 3.20380 * 127.85176 * 338.92322 * 2 1 3 24 24 H 1.08997 * 109.47359 * 300.00266 * 1 2 3 25 25 H 1.09003 * 109.46875 * 59.99851 * 1 2 3 26 26 H 1.09005 * 109.47633 * 179.97438 * 1 2 3 27 27 H 1.00894 * 110.99903 * 300.00794 * 4 2 1 28 28 H 1.00903 * 110.99678 * 63.95907 * 4 2 1 29 29 H 1.08002 * 119.91907 * 179.97438 * 8 6 5 30 30 H 1.07995 * 119.94405 * 179.97438 * 9 8 6 31 31 H 1.08000 * 120.02170 * 179.97438 * 10 9 8 32 32 H 0.96996 * 120.00110 * 179.97438 * 16 15 13 33 33 H 1.09000 * 109.47040 * 209.40059 * 21 12 11 34 34 H 1.09006 * 109.47321 * 329.39200 * 21 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0196 -0.6926 -1.1995 5 6 2.0323 -0.7105 1.2305 6 6 1.9710 -2.0899 1.3074 7 9 1.4613 -2.8015 0.2783 8 6 2.4324 -2.7426 2.4390 9 6 2.9558 -2.0177 3.4943 10 6 3.0200 -0.6405 3.4242 11 6 2.5522 0.0201 2.2929 12 7 2.6105 1.4100 2.2220 13 6 1.5606 2.1629 2.6735 14 1 0.5466 1.8320 2.5039 15 6 1.7990 3.3515 3.3492 16 7 0.8730 4.2860 3.3833 17 14 3.4340 3.6248 4.2101 18 1 4.3441 4.3836 3.3149 19 1 3.2126 4.3959 5.4598 20 1 4.0452 2.3123 4.5401 21 6 3.7957 2.0659 1.6641 22 6 3.6265 2.2322 0.2114 23 7 3.4959 2.3605 -0.9097 24 1 -0.3634 0.5138 0.8899 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 1.6960 -1.6480 -1.2227 28 1 1.7502 -0.1990 -2.0373 29 1 2.3832 -3.8199 2.4972 30 1 3.3141 -2.5300 4.3749 31 1 3.4286 -0.0760 4.2493 32 1 1.0395 5.1166 3.8558 33 1 3.9228 3.0434 2.1294 34 1 4.6759 1.4534 1.8597 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000019872247.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:01:55 Heat of formation + Delta-G solvation = 44.589743 kcal Electronic energy + Delta-G solvation = -20393.087255 eV Core-core repulsion = 17241.772535 eV Total energy + Delta-G solvation = -3151.314720 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 263.113 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -48.65925 -39.32391 -36.47870 -35.39936 -34.86445 -32.05127 -29.91779 -29.54514 -27.92655 -27.17172 -24.16812 -23.14575 -21.04764 -20.28765 -18.21339 -17.33918 -16.73700 -16.07871 -15.52905 -15.41553 -15.24010 -14.77480 -14.52669 -14.01200 -13.54788 -13.30083 -13.01520 -12.88331 -12.67067 -12.36709 -12.22128 -12.00618 -11.82226 -11.57389 -11.38690 -11.15761 -10.99090 -10.72831 -10.27281 -10.13576 -9.85822 -8.92146 -8.49330 -8.15799 -8.09535 -7.54060 -6.32565 -3.84781 1.63850 1.65656 3.06772 3.25986 3.27286 3.38946 3.58770 4.02793 4.20982 4.48192 4.74076 4.85877 5.01346 5.04095 5.17913 5.28978 5.53373 5.70257 5.74034 5.79952 5.84049 5.98978 6.04480 6.14917 6.36541 6.46687 6.53334 6.64320 6.78430 7.10673 7.21857 7.54628 7.66236 7.86176 8.16877 8.33401 8.59727 9.31168 9.62612 10.80184 Molecular weight = 263.11amu Principal moments of inertia in cm(-1) A = 0.019903 B = 0.009125 C = 0.007716 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1406.512175 B = 3067.727215 C = 3627.867686 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.123 3.877 3 H 0.114 0.886 4 N -0.847 5.847 5 C -0.115 4.115 6 C 0.104 3.896 7 F -0.144 7.144 8 C -0.174 4.174 9 C -0.094 4.094 10 C -0.135 4.135 11 C 0.231 3.769 12 N -0.551 5.551 13 C -0.288 4.288 14 H 0.088 0.912 15 C 0.052 3.948 16 N -0.874 5.874 17 Si 0.864 3.136 18 H -0.277 1.277 19 H -0.291 1.291 20 H -0.257 1.257 21 C 0.215 3.785 22 C 0.201 3.799 23 N -0.453 5.453 24 H 0.071 0.929 25 H 0.051 0.949 26 H 0.046 0.954 27 H 0.338 0.662 28 H 0.337 0.663 29 H 0.125 0.875 30 H 0.125 0.875 31 H 0.129 0.871 32 H 0.271 0.729 33 H 0.100 0.900 34 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.151 -10.085 0.167 10.907 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C 0.012 3.988 3 H 0.131 0.869 4 N -0.379 5.379 5 C -0.119 4.119 6 C 0.084 3.916 7 F -0.123 7.123 8 C -0.193 4.193 9 C -0.113 4.113 10 C -0.156 4.156 11 C 0.137 3.863 12 N -0.269 5.269 13 C -0.414 4.414 14 H 0.106 0.894 15 C -0.153 4.153 16 N -0.511 5.511 17 Si 0.692 3.308 18 H -0.205 1.205 19 H -0.218 1.218 20 H -0.182 1.182 21 C 0.087 3.913 22 C -0.119 4.119 23 N -0.132 5.132 24 H 0.090 0.910 25 H 0.070 0.930 26 H 0.066 0.934 27 H 0.154 0.846 28 H 0.150 0.850 29 H 0.143 0.857 30 H 0.143 0.857 31 H 0.147 0.853 32 H 0.081 0.919 33 H 0.118 0.882 34 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 4.567 -9.563 -1.153 10.660 hybrid contribution -0.436 0.041 0.590 0.735 sum 4.130 -9.521 -0.563 10.394 Atomic orbital electron populations 1.22525 0.97164 1.01104 1.02814 1.20395 0.92215 0.99574 0.86617 0.86886 1.59031 1.67761 1.06995 1.04149 1.20429 1.02046 0.91383 0.98056 1.17351 1.00007 0.88801 0.85400 1.91272 1.85194 1.78386 1.57412 1.20922 1.04453 1.00103 0.93811 1.20781 0.99043 0.93821 0.97661 1.21813 1.00831 0.93891 0.99040 1.17244 0.92909 0.85447 0.90686 1.41361 1.18668 0.98830 1.68019 1.18677 0.86381 1.02914 1.33471 0.89444 1.25459 0.97305 0.95984 0.96522 1.69844 1.35099 1.05446 1.40756 0.87121 0.84622 0.78915 0.80138 1.20496 1.21802 1.18155 1.19286 0.91441 1.00136 0.80465 1.30878 0.92393 0.92254 0.96335 1.80996 1.08933 1.09639 1.13641 0.90972 0.92988 0.93444 0.84554 0.85039 0.85702 0.85680 0.85262 0.91914 0.88238 0.88957 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.18 9.42 37.16 0.35 -2.83 16 2 C 0.12 2.32 3.27 -68.86 -0.23 2.10 16 3 H 0.11 2.40 3.56 -51.93 -0.18 2.22 16 4 N -0.85 -14.50 9.11 -5.65 -0.05 -14.55 16 5 C -0.12 -2.15 4.97 -104.31 -0.52 -2.67 16 6 C 0.10 1.75 6.98 -39.45 -0.28 1.48 16 7 F -0.14 -2.32 13.87 2.25 0.03 -2.29 16 8 C -0.17 -2.52 10.02 -39.44 -0.40 -2.92 16 9 C -0.09 -1.32 10.04 -39.63 -0.40 -1.72 16 10 C -0.14 -2.25 9.97 -39.33 -0.39 -2.65 16 11 C 0.23 4.42 5.02 -83.85 -0.42 4.00 16 12 N -0.55 -11.52 1.21 -116.26 -0.14 -11.66 16 13 C -0.29 -7.07 9.87 -15.10 -0.15 -7.22 16 14 H 0.09 2.38 7.58 -52.49 -0.40 1.99 16 15 C 0.05 1.30 5.27 -17.45 -0.09 1.21 16 16 N -0.87 -23.93 13.97 55.49 0.77 -23.15 16 17 Si 0.86 18.47 25.15 -169.99 -4.27 14.20 16 18 H -0.28 -5.70 6.68 56.52 0.38 -5.32 16 19 H -0.29 -6.46 7.11 56.52 0.40 -6.06 16 20 H -0.26 -5.09 7.11 56.52 0.40 -4.69 16 21 C 0.21 4.10 4.96 -6.83 -0.03 4.07 16 22 C 0.20 4.09 13.25 -20.76 -0.28 3.81 16 23 N -0.45 -9.66 17.91 42.15 0.75 -8.91 16 24 H 0.07 1.42 7.67 -51.93 -0.40 1.03 16 25 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 26 H 0.05 0.79 7.65 -51.93 -0.40 0.39 16 27 H 0.34 5.41 6.13 -39.29 -0.24 5.17 16 28 H 0.34 5.47 9.07 -39.29 -0.36 5.11 16 29 H 0.12 1.49 8.06 -52.49 -0.42 1.06 16 30 H 0.13 1.35 8.06 -52.49 -0.42 0.93 16 31 H 0.13 2.09 8.06 -52.49 -0.42 1.66 16 32 H 0.27 6.99 8.31 -40.82 -0.34 6.65 16 33 H 0.10 1.97 3.50 -51.93 -0.18 1.78 16 34 H 0.09 1.45 8.05 -51.93 -0.42 1.03 16 LS Contribution 289.01 15.07 4.36 4.36 Total: -1.00 -27.12 289.01 -4.80 -31.93 By element: Atomic # 1 Polarization: 16.83 SS G_CDS: -3.43 Total: 13.41 kcal Atomic # 6 Polarization: -0.50 SS G_CDS: -2.83 Total: -3.33 kcal Atomic # 7 Polarization: -59.61 SS G_CDS: 1.34 Total: -58.27 kcal Atomic # 9 Polarization: -2.32 SS G_CDS: 0.03 Total: -2.29 kcal Atomic # 14 Polarization: 18.47 SS G_CDS: -4.27 Total: 14.20 kcal Total LS contribution 4.36 Total: 4.36 kcal Total: -27.12 -4.80 -31.93 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000019872247.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.516 kcal (2) G-P(sol) polarization free energy of solvation -27.124 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.391 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.802 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.926 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.590 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds