Wall clock time and date at job start Mon Mar 30 2020 05:01:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08997 * 109.47059 * 2 1 4 4 N 1.46907 * 109.47019 * 239.99636 * 2 1 3 5 5 C 1.50706 * 109.46849 * 120.00449 * 2 1 3 6 6 C 1.38289 * 120.06095 * 74.99562 * 5 2 1 7 7 F 1.35099 * 119.98154 * 0.04674 * 6 5 2 8 8 C 1.38539 * 120.03716 * 180.02562 * 6 5 2 9 9 C 1.38310 * 120.15561 * 359.97438 * 8 6 5 10 10 C 1.38046 * 120.11525 * 0.02562 * 9 8 6 11 11 C 1.39028 * 120.05032 * 255.30059 * 5 2 1 12 12 N 1.39288 * 120.07969 * 359.97120 * 11 5 2 13 13 C 1.36857 * 120.00097 * 90.28397 * 12 11 5 14 14 H 1.07999 * 119.99770 * 321.49942 * 13 12 11 15 15 C 1.38790 * 120.00072 * 141.50694 * 13 12 11 16 16 N 1.31597 * 119.99948 * 156.72795 * 15 13 12 17 17 Si 1.86797 * 120.00086 * 336.72513 * 15 13 12 18 18 H 1.48509 * 109.46972 * 95.81219 * 17 15 13 19 19 H 1.48498 * 109.47207 * 215.81327 * 17 15 13 20 20 H 1.48503 * 109.47152 * 335.81643 * 17 15 13 21 21 C 1.46499 * 120.00157 * 270.28433 * 12 11 5 22 22 C 1.47194 * 109.47426 * 89.39480 * 21 12 11 23 23 N 3.20380 * 127.85176 * 338.92322 * 2 1 3 24 24 H 1.08997 * 109.47359 * 300.00266 * 1 2 3 25 25 H 1.09003 * 109.46875 * 59.99851 * 1 2 3 26 26 H 1.09005 * 109.47633 * 179.97438 * 1 2 3 27 27 H 1.00894 * 110.99903 * 300.00794 * 4 2 1 28 28 H 1.00903 * 110.99678 * 63.95907 * 4 2 1 29 29 H 1.08002 * 119.91907 * 179.97438 * 8 6 5 30 30 H 1.07995 * 119.94405 * 179.97438 * 9 8 6 31 31 H 1.08000 * 120.02170 * 179.97438 * 10 9 8 32 32 H 0.96996 * 120.00110 * 179.97438 * 16 15 13 33 33 H 1.09000 * 109.47040 * 209.40059 * 21 12 11 34 34 H 1.09006 * 109.47321 * 329.39200 * 21 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0196 -0.6926 -1.1995 5 6 2.0323 -0.7105 1.2305 6 6 1.9710 -2.0899 1.3074 7 9 1.4613 -2.8015 0.2783 8 6 2.4324 -2.7426 2.4390 9 6 2.9558 -2.0177 3.4943 10 6 3.0200 -0.6405 3.4242 11 6 2.5522 0.0201 2.2929 12 7 2.6105 1.4100 2.2220 13 6 1.5606 2.1629 2.6735 14 1 0.5466 1.8320 2.5039 15 6 1.7990 3.3515 3.3492 16 7 0.8730 4.2860 3.3833 17 14 3.4340 3.6248 4.2101 18 1 4.3441 4.3836 3.3149 19 1 3.2126 4.3959 5.4598 20 1 4.0452 2.3123 4.5401 21 6 3.7957 2.0659 1.6641 22 6 3.6265 2.2322 0.2114 23 7 3.4959 2.3605 -0.9097 24 1 -0.3634 0.5138 0.8899 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 1.6960 -1.6480 -1.2227 28 1 1.7502 -0.1990 -2.0373 29 1 2.3832 -3.8199 2.4972 30 1 3.3141 -2.5300 4.3749 31 1 3.4286 -0.0760 4.2493 32 1 1.0395 5.1166 3.8558 33 1 3.9228 3.0434 2.1294 34 1 4.6759 1.4534 1.8597 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000019872247.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:01:55 Heat of formation + Delta-G solvation = 27.756973 kcal Electronic energy + Delta-G solvation = -20393.817179 eV Core-core repulsion = 17241.772535 eV Total energy + Delta-G solvation = -3152.044644 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 263.113 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -49.91967 -40.70650 -37.98626 -36.86234 -36.43185 -33.88379 -31.24457 -30.87928 -29.36495 -28.82176 -25.79635 -24.48537 -22.47533 -21.65848 -19.94474 -18.79258 -18.13561 -17.57159 -17.07931 -16.83226 -16.56503 -16.17907 -15.83853 -15.38707 -15.20109 -14.87773 -14.42807 -14.34123 -14.23842 -13.91057 -13.86286 -13.53873 -13.21561 -13.03333 -12.75058 -12.66410 -12.49698 -12.22975 -11.94885 -11.63787 -11.46212 -10.73311 -9.84664 -9.43983 -9.42839 -9.26328 -8.23880 -5.76618 0.36894 0.39956 1.39396 1.52738 1.63675 1.78543 1.98033 2.42821 2.76230 2.97280 3.14189 3.34465 3.49734 3.63982 3.81884 4.11430 4.18443 4.32381 4.36658 4.41217 4.46391 4.55816 4.65993 4.84240 4.99468 5.02317 5.20886 5.37523 5.52700 5.72459 5.86675 5.98764 6.13271 6.29211 6.53713 6.71469 6.86140 7.47845 7.83215 8.93139 Molecular weight = 263.11amu Principal moments of inertia in cm(-1) A = 0.019903 B = 0.009125 C = 0.007716 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1406.512175 B = 3067.727215 C = 3627.867686 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.124 3.876 3 H 0.087 0.913 4 N -0.843 5.843 5 C -0.135 4.135 6 C 0.091 3.909 7 F -0.143 7.143 8 C -0.160 4.160 9 C -0.078 4.078 10 C -0.138 4.138 11 C 0.199 3.801 12 N -0.552 5.552 13 C -0.275 4.275 14 H 0.041 0.959 15 C -0.002 4.002 16 N -0.932 5.932 17 Si 0.927 3.073 18 H -0.263 1.263 19 H -0.305 1.305 20 H -0.223 1.223 21 C 0.211 3.789 22 C 0.207 3.793 23 N -0.477 5.477 24 H 0.043 0.957 25 H 0.055 0.945 26 H 0.060 0.940 27 H 0.345 0.655 28 H 0.340 0.660 29 H 0.159 0.841 30 H 0.169 0.831 31 H 0.138 0.862 32 H 0.269 0.731 33 H 0.096 0.904 34 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.475 -12.619 1.305 14.243 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.012 3.988 3 H 0.105 0.895 4 N -0.376 5.376 5 C -0.139 4.139 6 C 0.071 3.929 7 F -0.122 7.122 8 C -0.179 4.179 9 C -0.096 4.096 10 C -0.158 4.158 11 C 0.106 3.894 12 N -0.270 5.270 13 C -0.403 4.403 14 H 0.058 0.942 15 C -0.202 4.202 16 N -0.573 5.573 17 Si 0.751 3.249 18 H -0.189 1.189 19 H -0.233 1.233 20 H -0.146 1.146 21 C 0.083 3.917 22 C -0.112 4.112 23 N -0.156 5.156 24 H 0.062 0.938 25 H 0.074 0.926 26 H 0.079 0.921 27 H 0.162 0.838 28 H 0.153 0.847 29 H 0.176 0.824 30 H 0.186 0.814 31 H 0.155 0.845 32 H 0.078 0.922 33 H 0.114 0.886 34 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 6.915 -12.151 -0.036 13.981 hybrid contribution -1.247 0.691 0.151 1.433 sum 5.668 -11.460 0.115 12.785 Atomic orbital electron populations 1.22438 0.97273 1.01497 1.01578 1.20242 0.92129 0.98599 0.87835 0.89509 1.58998 1.67604 1.07304 1.03741 1.20452 1.03116 0.92472 0.97816 1.17547 1.00643 0.88277 0.86419 1.91269 1.85250 1.78111 1.57565 1.21355 1.02189 1.01859 0.92483 1.21216 0.97099 0.92673 0.98648 1.21930 1.00630 0.95252 0.97951 1.17484 0.95201 0.84509 0.92232 1.41212 1.18107 0.99632 1.68061 1.18337 0.85857 1.03207 1.32872 0.94157 1.26119 1.01322 0.95482 0.97230 1.69994 1.38197 1.06288 1.42781 0.86119 0.80289 0.80304 0.78162 1.18900 1.23307 1.14555 1.19548 0.92116 1.00699 0.79289 1.31216 0.91698 0.91559 0.96690 1.80980 1.09669 1.10456 1.14536 0.93775 0.92589 0.92110 0.83762 0.84714 0.82351 0.81364 0.84463 0.92203 0.88630 0.84702 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -6.24 9.42 71.98 0.68 -5.56 16 2 C 0.12 4.69 3.27 44.17 0.14 4.83 16 3 H 0.09 3.77 3.56 -2.39 -0.01 3.76 16 4 N -0.84 -28.40 9.11 -171.79 -1.56 -29.96 16 5 C -0.14 -4.89 4.97 -19.66 -0.10 -4.98 16 6 C 0.09 2.84 6.98 22.35 0.16 2.99 16 7 F -0.14 -4.31 13.87 44.97 0.62 -3.69 16 8 C -0.16 -3.93 10.02 22.36 0.22 -3.70 16 9 C -0.08 -1.79 10.04 22.24 0.22 -1.57 16 10 C -0.14 -4.10 9.97 22.44 0.22 -3.88 16 11 C 0.20 7.31 5.02 38.36 0.19 7.50 16 12 N -0.55 -22.76 1.21 -521.73 -0.63 -23.39 16 13 C -0.28 -13.89 9.87 84.04 0.83 -13.06 16 14 H 0.04 2.37 7.58 -2.91 -0.02 2.35 16 15 C 0.00 -0.11 5.27 84.86 0.45 0.34 16 16 N -0.93 -53.29 13.97 21.65 0.30 -52.98 16 17 Si 0.93 37.43 25.15 68.60 1.73 39.16 16 18 H -0.26 -9.91 6.68 99.48 0.66 -9.24 16 19 H -0.30 -12.98 7.11 99.48 0.71 -12.27 16 20 H -0.22 -7.72 7.11 99.48 0.71 -7.02 16 21 C 0.21 7.70 4.96 84.57 0.42 8.12 16 22 C 0.21 8.35 13.25 89.44 1.19 9.54 16 23 N -0.48 -20.38 17.91 20.00 0.36 -20.02 16 24 H 0.04 1.85 7.67 -2.39 -0.02 1.83 16 25 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 26 H 0.06 2.03 7.65 -2.38 -0.02 2.01 16 27 H 0.34 10.67 6.13 -89.70 -0.55 10.12 16 28 H 0.34 10.98 9.07 -89.69 -0.81 10.17 16 29 H 0.16 2.85 8.06 -2.91 -0.02 2.82 16 30 H 0.17 2.48 8.06 -2.91 -0.02 2.46 16 31 H 0.14 3.85 8.06 -2.91 -0.02 3.83 16 32 H 0.27 14.51 8.31 -92.71 -0.77 13.74 16 33 H 0.10 3.59 3.50 -2.39 -0.01 3.58 16 34 H 0.14 3.76 8.05 -2.38 -0.02 3.74 16 Total: -1.00 -61.71 289.01 5.20 -56.51 By element: Atomic # 1 Polarization: 34.05 SS G_CDS: -0.24 Total: 33.81 kcal Atomic # 6 Polarization: -4.06 SS G_CDS: 4.63 Total: 0.57 kcal Atomic # 7 Polarization: -124.82 SS G_CDS: -1.53 Total: -126.35 kcal Atomic # 9 Polarization: -4.31 SS G_CDS: 0.62 Total: -3.69 kcal Atomic # 14 Polarization: 37.43 SS G_CDS: 1.73 Total: 39.16 kcal Total: -61.71 5.20 -56.51 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000019872247.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.269 kcal (2) G-P(sol) polarization free energy of solvation -61.712 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.556 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.201 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.512 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.757 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds