Wall clock time and date at job start Mon Mar 30 2020 05:17:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86807 * 119.99842 * 2 1 4 4 H 1.48503 * 109.46967 * 179.97438 * 3 2 1 5 5 H 1.48495 * 109.47272 * 299.99939 * 3 2 1 6 6 H 1.48502 * 109.46856 * 59.99919 * 3 2 1 7 7 C 1.37873 * 120.00077 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99680 * 179.97438 * 7 2 1 9 9 C 1.50693 * 120.00263 * 0.02562 * 7 2 1 10 10 N 1.46899 * 109.47647 * 179.97438 * 9 7 2 11 11 C 1.46910 * 110.99559 * 66.04357 * 10 9 7 12 12 C 1.53001 * 109.46788 * 199.71387 * 11 10 9 13 13 C 1.50700 * 109.46922 * 174.92672 * 12 11 10 14 14 N 1.34779 * 119.99920 * 180.02562 * 13 12 11 15 15 O 1.21282 * 119.99840 * 0.02562 * 13 12 11 16 16 C 1.46894 * 111.00235 * 189.99896 * 10 9 7 17 17 C 1.50697 * 109.47425 * 75.80720 * 16 10 9 18 18 C 1.38669 * 120.41798 * 264.68406 * 17 16 10 19 19 C 1.38632 * 118.42121 * 180.23676 * 18 17 16 20 20 C 1.38230 * 119.15929 * 359.75614 * 19 18 17 21 21 N 1.31854 * 120.76374 * 359.97438 * 20 19 18 22 22 C 1.31888 * 121.72954 * 359.97438 * 21 20 19 23 23 H 0.97003 * 119.99846 * 0.02562 * 1 2 3 24 24 H 1.09003 * 109.47571 * 59.99227 * 9 7 2 25 25 H 1.09007 * 109.46896 * 300.00173 * 9 7 2 26 26 H 1.08997 * 109.47105 * 319.71559 * 11 10 9 27 27 H 1.08996 * 109.46771 * 79.72148 * 11 10 9 28 28 H 1.09002 * 109.47531 * 294.93174 * 12 11 10 29 29 H 1.09007 * 109.46623 * 54.93148 * 12 11 10 30 30 H 0.96998 * 119.99547 * 359.97438 * 14 13 12 31 31 H 0.96997 * 119.99659 * 180.02562 * 14 13 12 32 32 H 1.09000 * 109.47587 * 315.80312 * 16 10 9 33 33 H 1.09004 * 109.46901 * 195.80993 * 16 10 9 34 34 H 1.07999 * 120.79111 * 359.97216 * 18 17 16 35 35 H 1.07999 * 120.42006 * 179.72951 * 19 18 17 36 36 H 1.07999 * 119.62143 * 180.02562 * 20 19 18 37 37 H 1.07991 * 119.62512 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7092 1.3465 0.0006 5 1 1.8905 2.3965 -1.2124 6 1 1.8904 2.3965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0001 9 6 1.2512 -2.4991 0.0005 10 7 2.2058 -3.6157 0.0005 11 6 2.9711 -3.6539 1.2539 12 6 4.2484 -4.4702 1.0468 13 6 5.0932 -4.4060 2.2930 14 7 6.2735 -5.0550 2.3413 15 8 4.7111 -3.7703 3.2526 16 6 1.5213 -4.8934 -0.2376 17 6 1.1642 -5.0077 -1.6972 18 6 -0.0961 -4.6388 -2.1426 19 6 -0.3818 -4.7657 -3.4932 20 6 0.5938 -5.2474 -4.3457 21 7 1.7836 -5.5836 -3.8876 22 6 2.0908 -5.4753 -2.6096 23 1 -0.4850 0.8401 -0.0004 24 1 0.6247 -2.5571 -0.8896 25 1 0.6241 -2.5566 0.8903 26 1 3.2330 -2.6384 1.5508 27 1 2.3670 -4.1163 2.0345 28 1 3.9869 -5.5076 0.8381 29 1 4.8090 -4.0607 0.2063 30 1 6.5789 -5.5637 1.5739 31 1 6.8171 -5.0140 3.1436 32 1 0.6128 -4.9365 0.3632 33 1 2.1803 -5.7159 0.0408 34 1 -0.8388 -4.2656 -1.4531 35 1 -1.3545 -4.4919 -3.8744 36 1 0.3794 -5.3489 -5.3993 37 1 3.0758 -5.7609 -2.2712 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000043639213.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:17:36 Heat of formation + Delta-G solvation = -6.987872 kcal Electronic energy + Delta-G solvation = -19548.649408 eV Core-core repulsion = 16518.558419 eV Total energy + Delta-G solvation = -3030.090988 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.137 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.84754 -39.26773 -36.81614 -33.54250 -32.79609 -32.42111 -31.40483 -30.11426 -27.30893 -25.17740 -23.43664 -23.00063 -21.84806 -20.43515 -19.68589 -17.19960 -16.74752 -16.70744 -16.31355 -15.91966 -15.38223 -14.85792 -14.62311 -14.29303 -13.84861 -13.53687 -13.20543 -12.91337 -12.69633 -12.53075 -12.29613 -11.92258 -11.63668 -11.15626 -10.91416 -10.67536 -10.57217 -10.31494 -9.94933 -9.72191 -9.60536 -9.37741 -9.27081 -9.07095 -8.60032 -8.43650 -7.36246 -6.03011 -4.03163 1.47154 1.66286 2.84342 3.32628 3.39916 3.45072 3.64720 4.13667 4.44952 4.75387 4.91309 5.11348 5.19961 5.26463 5.33288 5.36453 5.42512 5.44517 5.65035 5.73128 5.90340 5.96994 6.05727 6.14691 6.42311 6.49213 6.67534 6.75566 6.87324 7.04673 7.24435 7.30140 7.41315 7.78405 8.02640 8.13696 8.29200 8.42063 8.49892 9.03587 9.60854 11.08017 Molecular weight = 263.14amu Principal moments of inertia in cm(-1) A = 0.009842 B = 0.008437 C = 0.004998 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2844.338007 B = 3317.828701 C = 5600.473409 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.056 3.944 3 Si 0.895 3.105 4 H -0.272 1.272 5 H -0.285 1.285 6 H -0.284 1.284 7 C -0.505 4.505 8 H 0.064 0.936 9 C 0.192 3.808 10 N -0.532 5.532 11 C 0.076 3.924 12 C -0.137 4.137 13 C 0.516 3.484 14 N -0.863 5.863 15 O -0.540 6.540 16 C 0.091 3.909 17 C -0.108 4.108 18 C -0.061 4.061 19 C -0.173 4.173 20 C 0.085 3.915 21 N -0.493 5.493 22 C 0.113 3.887 23 H 0.260 0.740 24 H 0.035 0.965 25 H -0.008 1.008 26 H 0.098 0.902 27 H 0.029 0.971 28 H 0.085 0.915 29 H 0.102 0.898 30 H 0.399 0.601 31 H 0.396 0.604 32 H 0.038 0.962 33 H 0.071 0.929 34 H 0.132 0.868 35 H 0.129 0.871 36 H 0.148 0.852 37 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.412 -13.476 -2.504 14.737 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.145 4.145 3 Si 0.723 3.277 4 H -0.196 1.196 5 H -0.211 1.211 6 H -0.211 1.211 7 C -0.544 4.544 8 H 0.082 0.918 9 C 0.068 3.932 10 N -0.257 5.257 11 C -0.053 4.053 12 C -0.178 4.178 13 C 0.302 3.698 14 N -0.427 5.427 15 O -0.416 6.416 16 C -0.038 4.038 17 C -0.110 4.110 18 C -0.088 4.088 19 C -0.193 4.193 20 C -0.072 4.072 21 N -0.201 5.201 22 C -0.045 4.045 23 H 0.070 0.930 24 H 0.053 0.947 25 H 0.010 0.990 26 H 0.116 0.884 27 H 0.047 0.953 28 H 0.103 0.897 29 H 0.120 0.880 30 H 0.227 0.773 31 H 0.226 0.774 32 H 0.057 0.943 33 H 0.090 0.910 34 H 0.150 0.850 35 H 0.147 0.853 36 H 0.165 0.835 37 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 5.786 -13.114 -2.949 14.634 hybrid contribution -0.460 1.016 1.128 1.586 sum 5.326 -12.099 -1.821 13.344 Atomic orbital electron populations 1.69957 1.06016 1.26638 1.51205 1.24958 0.94858 0.99269 0.95418 0.86474 0.80184 0.83540 0.77461 1.19643 1.21079 1.21063 1.21167 0.93534 0.89875 1.49784 0.91818 1.19789 0.90100 0.87095 0.96242 1.62099 1.27891 1.02112 1.33570 1.21726 0.91718 1.01675 0.90174 1.21710 0.97970 1.02446 0.95633 1.20935 0.81367 0.77606 0.89922 1.43948 1.22859 1.55437 1.20486 1.90758 1.71541 1.41177 1.38143 1.20983 0.97831 0.94226 0.90773 1.20820 0.94218 0.98420 0.97560 1.21576 0.96685 0.94653 0.95853 1.22063 1.01072 1.01752 0.94425 1.22593 0.89029 0.95828 0.99799 1.67627 1.20020 1.16212 1.16272 1.22474 0.98629 0.95430 0.87933 0.93022 0.94669 0.99033 0.88380 0.95310 0.89718 0.87992 0.77263 0.77409 0.94343 0.91031 0.85018 0.85275 0.83454 0.83255 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.59 13.29 55.43 0.74 -25.85 16 2 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 3 Si 0.90 22.03 29.54 -169.99 -5.02 17.01 16 4 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 5 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 6 H -0.28 -6.96 7.11 56.52 0.40 -6.55 16 7 C -0.51 -14.10 8.23 -34.44 -0.28 -14.38 16 8 H 0.06 1.78 7.31 -52.49 -0.38 1.39 16 9 C 0.19 4.85 4.54 -4.98 -0.02 4.83 16 10 N -0.53 -10.69 4.35 -237.52 -1.03 -11.73 16 11 C 0.08 1.43 4.14 -3.82 -0.02 1.42 16 12 C -0.14 -1.91 5.74 -27.88 -0.16 -2.07 16 13 C 0.52 7.42 8.10 -10.98 -0.09 7.33 16 14 N -0.86 -8.01 8.87 31.22 0.28 -7.74 16 15 O -0.54 -10.45 16.75 5.56 0.09 -10.35 16 16 C 0.09 1.49 4.97 -4.98 -0.02 1.47 16 17 C -0.11 -1.77 5.05 -104.48 -0.53 -2.30 16 18 C -0.06 -1.00 8.57 -39.28 -0.34 -1.34 16 19 C -0.17 -2.51 10.11 -39.44 -0.40 -2.91 16 20 C 0.08 1.22 11.18 -17.55 -0.20 1.02 16 21 N -0.49 -7.94 10.36 -13.25 -0.14 -8.07 16 22 C 0.11 1.76 10.88 -17.55 -0.19 1.57 16 23 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 24 H 0.04 0.94 6.34 -51.93 -0.33 0.61 16 25 H -0.01 -0.22 8.12 -51.93 -0.42 -0.64 16 26 H 0.10 2.22 6.39 -51.93 -0.33 1.89 16 27 H 0.03 0.55 8.00 -51.93 -0.42 0.14 16 28 H 0.08 0.94 6.89 -51.93 -0.36 0.58 16 29 H 0.10 1.37 8.14 -51.92 -0.42 0.94 16 30 H 0.40 2.39 8.83 -40.82 -0.36 2.03 16 31 H 0.40 3.27 8.93 -40.82 -0.36 2.90 16 32 H 0.04 0.65 7.92 -51.93 -0.41 0.24 16 33 H 0.07 0.97 6.54 -51.93 -0.34 0.63 16 34 H 0.13 2.14 8.00 -52.49 -0.42 1.72 16 35 H 0.13 1.53 8.06 -52.49 -0.42 1.11 16 36 H 0.15 1.65 8.06 -52.49 -0.42 1.23 16 37 H 0.15 2.00 8.06 -52.49 -0.42 1.57 16 LS Contribution 315.37 15.07 4.75 4.75 Total: -1.00 -34.17 315.37 -7.64 -41.81 By element: Atomic # 1 Polarization: 8.99 SS G_CDS: -4.96 Total: 4.03 kcal Atomic # 6 Polarization: -1.50 SS G_CDS: -2.34 Total: -3.85 kcal Atomic # 7 Polarization: -53.23 SS G_CDS: -0.16 Total: -53.39 kcal Atomic # 8 Polarization: -10.45 SS G_CDS: 0.09 Total: -10.35 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -5.02 Total: 17.01 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -34.17 -7.64 -41.81 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000043639213.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.817 kcal (2) G-P(sol) polarization free energy of solvation -34.169 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.648 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.636 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.805 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.988 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds