Wall clock time and date at job start Mon Mar 30 2020 05:17:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86807 * 119.99842 * 2 1 4 4 H 1.48503 * 109.46967 * 179.97438 * 3 2 1 5 5 H 1.48495 * 109.47272 * 299.99939 * 3 2 1 6 6 H 1.48502 * 109.46856 * 59.99919 * 3 2 1 7 7 C 1.37873 * 120.00077 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99680 * 179.97438 * 7 2 1 9 9 C 1.50693 * 120.00263 * 0.02562 * 7 2 1 10 10 N 1.46899 * 109.47647 * 179.97438 * 9 7 2 11 11 C 1.46910 * 110.99559 * 66.04357 * 10 9 7 12 12 C 1.53001 * 109.46788 * 199.71387 * 11 10 9 13 13 C 1.50700 * 109.46922 * 174.92672 * 12 11 10 14 14 N 1.34779 * 119.99920 * 180.02562 * 13 12 11 15 15 O 1.21282 * 119.99840 * 0.02562 * 13 12 11 16 16 C 1.46894 * 111.00235 * 189.99896 * 10 9 7 17 17 C 1.50697 * 109.47425 * 75.80720 * 16 10 9 18 18 C 1.38669 * 120.41798 * 264.68406 * 17 16 10 19 19 C 1.38632 * 118.42121 * 180.23676 * 18 17 16 20 20 C 1.38230 * 119.15929 * 359.75614 * 19 18 17 21 21 N 1.31854 * 120.76374 * 359.97438 * 20 19 18 22 22 C 1.31888 * 121.72954 * 359.97438 * 21 20 19 23 23 H 0.97003 * 119.99846 * 0.02562 * 1 2 3 24 24 H 1.09003 * 109.47571 * 59.99227 * 9 7 2 25 25 H 1.09007 * 109.46896 * 300.00173 * 9 7 2 26 26 H 1.08997 * 109.47105 * 319.71559 * 11 10 9 27 27 H 1.08996 * 109.46771 * 79.72148 * 11 10 9 28 28 H 1.09002 * 109.47531 * 294.93174 * 12 11 10 29 29 H 1.09007 * 109.46623 * 54.93148 * 12 11 10 30 30 H 0.96998 * 119.99547 * 359.97438 * 14 13 12 31 31 H 0.96997 * 119.99659 * 180.02562 * 14 13 12 32 32 H 1.09000 * 109.47587 * 315.80312 * 16 10 9 33 33 H 1.09004 * 109.46901 * 195.80993 * 16 10 9 34 34 H 1.07999 * 120.79111 * 359.97216 * 18 17 16 35 35 H 1.07999 * 120.42006 * 179.72951 * 19 18 17 36 36 H 1.07999 * 119.62143 * 180.02562 * 20 19 18 37 37 H 1.07991 * 119.62512 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7092 1.3465 0.0006 5 1 1.8905 2.3965 -1.2124 6 1 1.8904 2.3965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0001 9 6 1.2512 -2.4991 0.0005 10 7 2.2058 -3.6157 0.0005 11 6 2.9711 -3.6539 1.2539 12 6 4.2484 -4.4702 1.0468 13 6 5.0932 -4.4060 2.2930 14 7 6.2735 -5.0550 2.3413 15 8 4.7111 -3.7703 3.2526 16 6 1.5213 -4.8934 -0.2376 17 6 1.1642 -5.0077 -1.6972 18 6 -0.0961 -4.6388 -2.1426 19 6 -0.3818 -4.7657 -3.4932 20 6 0.5938 -5.2474 -4.3457 21 7 1.7836 -5.5836 -3.8876 22 6 2.0908 -5.4753 -2.6096 23 1 -0.4850 0.8401 -0.0004 24 1 0.6247 -2.5571 -0.8896 25 1 0.6241 -2.5566 0.8903 26 1 3.2330 -2.6384 1.5508 27 1 2.3670 -4.1163 2.0345 28 1 3.9869 -5.5076 0.8381 29 1 4.8090 -4.0607 0.2063 30 1 6.5789 -5.5637 1.5739 31 1 6.8171 -5.0140 3.1436 32 1 0.6128 -4.9365 0.3632 33 1 2.1803 -5.7159 0.0408 34 1 -0.8388 -4.2656 -1.4531 35 1 -1.3545 -4.4919 -3.8744 36 1 0.3794 -5.3489 -5.3993 37 1 3.0758 -5.7609 -2.2712 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000043639213.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:17:35 Heat of formation + Delta-G solvation = -34.112622 kcal Electronic energy + Delta-G solvation = -19549.825625 eV Core-core repulsion = 16518.558419 eV Total energy + Delta-G solvation = -3031.267206 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.137 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.06137 -40.45145 -38.36273 -34.84087 -34.58239 -33.73831 -32.59292 -31.59203 -29.08302 -26.65056 -25.08142 -24.29383 -23.24747 -21.80750 -21.00965 -18.60616 -18.17681 -17.91604 -17.67186 -17.16632 -16.74624 -16.52420 -16.07206 -15.75293 -15.32150 -14.89868 -14.47801 -14.40320 -13.97214 -13.91330 -13.75023 -13.67542 -13.20889 -12.82913 -12.61840 -12.46878 -12.25263 -11.90423 -11.69643 -11.27516 -10.97708 -10.66602 -10.57631 -10.57048 -10.33403 -9.80582 -9.05896 -8.21369 -6.28762 0.29434 0.44020 1.36958 1.38115 1.50731 1.72688 2.38294 2.61539 2.95554 3.12217 3.51428 3.67984 3.93179 4.01441 4.05151 4.15859 4.22205 4.23266 4.46752 4.51970 4.62007 4.77140 4.84325 4.98421 5.04304 5.07373 5.27478 5.31798 5.33554 5.48609 5.65368 5.88846 5.98746 6.06494 6.28975 6.55746 6.60858 6.86548 7.11987 7.39593 7.45733 8.89752 Molecular weight = 263.14amu Principal moments of inertia in cm(-1) A = 0.009842 B = 0.008437 C = 0.004998 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2844.338007 B = 3317.828701 C = 5600.473409 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.003 3.997 3 Si 0.960 3.040 4 H -0.266 1.266 5 H -0.276 1.276 6 H -0.281 1.281 7 C -0.518 4.518 8 H 0.059 0.941 9 C 0.209 3.791 10 N -0.529 5.529 11 C 0.078 3.922 12 C -0.124 4.124 13 C 0.515 3.485 14 N -0.834 5.834 15 O -0.600 6.600 16 C 0.093 3.907 17 C -0.125 4.125 18 C -0.083 4.083 19 C -0.175 4.175 20 C 0.084 3.916 21 N -0.508 5.508 22 C 0.110 3.890 23 H 0.263 0.737 24 H 0.018 0.982 25 H -0.044 1.044 26 H 0.053 0.947 27 H 0.018 0.982 28 H 0.124 0.876 29 H 0.114 0.886 30 H 0.420 0.580 31 H 0.406 0.594 32 H 0.028 0.972 33 H 0.110 0.890 34 H 0.119 0.881 35 H 0.153 0.847 36 H 0.181 0.819 37 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.256 -14.772 -3.882 16.910 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.195 4.195 3 Si 0.785 3.215 4 H -0.190 1.190 5 H -0.202 1.202 6 H -0.207 1.207 7 C -0.557 4.557 8 H 0.078 0.922 9 C 0.083 3.917 10 N -0.253 5.253 11 C -0.050 4.050 12 C -0.164 4.164 13 C 0.301 3.699 14 N -0.398 5.398 15 O -0.481 6.481 16 C -0.035 4.035 17 C -0.127 4.127 18 C -0.110 4.110 19 C -0.194 4.194 20 C -0.072 4.072 21 N -0.217 5.217 22 C -0.046 4.046 23 H 0.072 0.928 24 H 0.036 0.964 25 H -0.027 1.027 26 H 0.072 0.928 27 H 0.037 0.963 28 H 0.142 0.858 29 H 0.132 0.868 30 H 0.252 0.748 31 H 0.237 0.763 32 H 0.046 0.954 33 H 0.128 0.872 34 H 0.137 0.863 35 H 0.171 0.829 36 H 0.198 0.802 37 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges 7.690 -14.468 -4.354 16.954 hybrid contribution -1.047 1.335 1.526 2.282 sum 6.643 -13.133 -2.828 14.987 Atomic orbital electron populations 1.70071 1.07439 1.27595 1.52156 1.25812 0.95731 1.02846 0.95129 0.85474 0.79079 0.79287 0.77681 1.18991 1.20173 1.20696 1.21492 0.93513 0.91342 1.49320 0.92248 1.19390 0.90149 0.88536 0.93630 1.62033 1.26832 1.02442 1.33959 1.21609 0.93878 1.00165 0.89362 1.21566 0.95333 1.03641 0.95847 1.20981 0.82456 0.77323 0.89136 1.43650 1.20931 1.53624 1.21624 1.90749 1.73195 1.44082 1.40069 1.21069 0.98012 0.93284 0.91147 1.20853 0.94657 0.99664 0.97531 1.21717 0.96928 0.95451 0.96909 1.22349 1.02384 1.01136 0.93566 1.23165 0.88337 0.94424 1.01320 1.67709 1.20812 1.16791 1.16393 1.22824 0.99312 0.94791 0.87712 0.92822 0.96374 1.02654 0.92809 0.96326 0.85784 0.86759 0.74825 0.76333 0.95410 0.87150 0.86304 0.82899 0.80182 0.80859 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.69 13.29 21.45 0.28 -56.40 16 2 C 0.00 0.16 5.46 84.65 0.46 0.62 16 3 Si 0.96 45.77 29.54 68.60 2.03 47.80 16 4 H -0.27 -12.29 7.11 99.48 0.71 -11.58 16 5 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 6 H -0.28 -13.18 7.11 99.48 0.71 -12.47 16 7 C -0.52 -29.80 8.23 25.60 0.21 -29.59 16 8 H 0.06 3.39 7.31 -2.91 -0.02 3.37 16 9 C 0.21 11.00 4.54 85.56 0.39 11.39 16 10 N -0.53 -21.43 4.35 -905.37 -3.93 -25.37 16 11 C 0.08 3.01 4.14 86.30 0.36 3.37 16 12 C -0.12 -3.17 5.74 29.85 0.17 -3.00 16 13 C 0.52 13.99 8.10 87.66 0.71 14.70 16 14 N -0.83 -12.97 8.87 -173.53 -1.54 -14.51 16 15 O -0.60 -23.41 16.75 -3.04 -0.05 -23.46 16 16 C 0.09 3.01 4.97 85.56 0.43 3.43 16 17 C -0.12 -4.01 5.05 -19.77 -0.10 -4.10 16 18 C -0.08 -2.74 8.57 22.47 0.19 -2.55 16 19 C -0.17 -4.84 10.11 22.36 0.23 -4.62 16 20 C 0.08 2.23 11.18 84.69 0.95 3.18 16 21 N -0.51 -15.19 10.36 -195.84 -2.03 -17.22 16 22 C 0.11 3.22 10.88 84.67 0.92 4.15 16 23 H 0.26 15.06 8.31 -92.71 -0.77 14.29 16 24 H 0.02 1.01 6.34 -2.39 -0.02 1.00 16 25 H -0.04 -2.59 8.12 -2.38 -0.02 -2.61 16 26 H 0.05 2.54 6.39 -2.39 -0.02 2.53 16 27 H 0.02 0.73 8.00 -2.39 -0.02 0.72 16 28 H 0.12 2.21 6.89 -2.39 -0.02 2.20 16 29 H 0.11 2.72 8.14 -2.38 -0.02 2.70 16 30 H 0.42 3.29 8.83 -92.71 -0.82 2.47 16 31 H 0.41 5.59 8.93 -92.71 -0.83 4.76 16 32 H 0.03 0.96 7.92 -2.39 -0.02 0.94 16 33 H 0.11 2.67 6.54 -2.38 -0.02 2.65 16 34 H 0.12 4.10 8.00 -2.91 -0.02 4.07 16 35 H 0.15 3.37 8.06 -2.91 -0.02 3.35 16 36 H 0.18 3.44 8.06 -2.91 -0.02 3.42 16 37 H 0.17 4.03 8.06 -2.92 -0.02 4.01 16 Total: -1.00 -77.52 315.37 -0.88 -78.40 By element: Atomic # 1 Polarization: 14.33 SS G_CDS: -0.55 Total: 13.78 kcal Atomic # 6 Polarization: -7.93 SS G_CDS: 4.91 Total: -3.02 kcal Atomic # 7 Polarization: -106.29 SS G_CDS: -7.22 Total: -113.50 kcal Atomic # 8 Polarization: -23.41 SS G_CDS: -0.05 Total: -23.46 kcal Atomic # 14 Polarization: 45.77 SS G_CDS: 2.03 Total: 47.80 kcal Total: -77.52 -0.88 -78.40 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000043639213.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.292 kcal (2) G-P(sol) polarization free energy of solvation -77.525 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.233 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.880 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.405 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.113 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds