Wall clock time and date at job start Mon Mar 30 2020 05:04:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35664 * 116.99758 * 2 1 4 4 C 1.39073 * 119.88584 * 359.71724 * 3 2 1 5 5 C 1.36588 * 120.24348 * 179.76152 * 4 3 2 6 6 C 1.40034 * 120.00591 * 0.52225 * 5 4 3 7 7 C 1.46864 * 120.11480 * 179.76401 * 6 5 4 8 8 O 1.21300 * 119.99605 * 359.96676 * 7 6 5 9 9 C 1.40032 * 119.77417 * 359.73594 * 6 5 4 10 10 C 1.37659 * 119.75855 * 0.02562 * 9 6 5 11 11 C 1.50697 * 120.00764 * 179.97438 * 10 9 6 12 12 N 1.46904 * 109.47055 * 260.02379 * 11 10 9 13 13 C 1.46899 * 111.00088 * 293.95510 * 12 11 10 14 14 C 1.46901 * 110.99918 * 170.00019 * 12 11 10 15 15 C 1.50705 * 109.46877 * 190.00170 * 14 12 11 16 16 H 1.07998 * 120.00233 * 359.97438 * 15 14 12 17 17 C 1.37878 * 119.99625 * 180.02562 * 15 14 12 18 18 N 1.31511 * 120.00298 * 359.97438 * 17 15 14 19 19 Si 1.86807 * 119.99626 * 179.97438 * 17 15 14 20 20 H 1.48494 * 109.47143 * 359.97438 * 19 17 15 21 21 H 1.48499 * 109.46945 * 120.00043 * 19 17 15 22 22 H 1.48499 * 109.46820 * 239.99502 * 19 17 15 23 23 H 1.09001 * 109.47103 * 60.00802 * 1 2 3 24 24 H 1.09004 * 109.47054 * 180.02562 * 1 2 3 25 25 H 1.09000 * 109.47187 * 300.00362 * 1 2 3 26 26 H 1.08002 * 119.87995 * 0.02562 * 4 3 2 27 27 H 1.08003 * 119.99326 * 180.25492 * 5 4 3 28 28 H 1.07998 * 120.00105 * 179.97438 * 7 6 5 29 29 H 1.08003 * 120.12408 * 180.02562 * 9 6 5 30 30 H 1.08997 * 109.47349 * 20.01986 * 11 10 9 31 31 H 1.08995 * 109.47298 * 140.02267 * 11 10 9 32 32 H 1.09001 * 109.47037 * 59.99912 * 13 12 11 33 33 H 1.09000 * 109.47450 * 180.02562 * 13 12 11 34 34 H 1.09006 * 109.46650 * 300.00174 * 13 12 11 35 35 H 1.08994 * 109.47222 * 309.99827 * 14 12 11 36 36 H 1.08998 * 109.47146 * 69.99780 * 14 12 11 37 37 H 0.96999 * 119.99923 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0449 1.2088 0.0000 4 6 1.2851 2.3736 -0.0060 5 6 1.8975 3.5945 -0.0011 6 6 3.2954 3.6768 -0.0011 7 6 3.9564 4.9883 -0.0011 8 8 3.2912 6.0026 -0.0017 9 6 4.0610 2.5042 -0.0005 10 6 3.4339 1.2788 -0.0005 11 6 4.2523 0.0134 -0.0005 12 7 4.3167 -0.5281 -1.3645 13 6 2.9912 -0.9692 -1.8190 14 6 5.2938 -1.6217 -1.4512 15 6 5.5133 -1.9857 -2.8971 16 1 4.9800 -1.4578 -3.6738 17 6 6.3942 -2.9934 -3.2281 18 7 7.0432 -3.6366 -2.2822 19 14 6.6658 -3.4451 -5.0203 20 1 5.8219 -2.5791 -5.8823 21 1 8.0958 -3.2486 -5.3690 22 1 6.2951 -4.8671 -5.2339 23 1 -0.3633 0.5137 -0.8901 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5139 0.8899 26 1 0.2068 2.3126 -0.0101 27 1 1.3035 4.4965 -0.0016 28 1 5.0346 5.0495 -0.0007 29 1 5.1395 2.5611 -0.0001 30 1 5.2604 0.2326 0.3513 31 1 3.7884 -0.7193 0.6598 32 1 2.3042 -0.1229 -1.8110 33 1 3.0676 -1.3660 -2.8313 34 1 2.6184 -1.7462 -1.1517 35 1 6.2375 -1.3015 -1.0099 36 1 4.9162 -2.4899 -0.9112 37 1 7.6632 -4.3452 -2.5152 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000050132711.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:04:51 Heat of formation + Delta-G solvation = -35.959517 kcal Electronic energy + Delta-G solvation = -19600.394177 eV Core-core repulsion = 16536.754132 eV Total energy + Delta-G solvation = -3063.640044 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.56570 -38.99521 -37.21779 -36.23544 -32.77989 -31.46048 -30.67888 -27.74930 -27.19494 -26.36457 -24.37067 -23.80422 -21.95756 -20.75835 -19.75311 -18.04403 -17.01191 -16.34725 -16.15558 -16.04583 -15.14115 -14.79507 -14.50103 -14.26534 -14.17318 -13.84279 -13.56494 -13.35832 -12.82183 -12.40390 -12.25336 -12.02806 -11.84775 -11.42418 -11.21211 -10.99545 -10.89162 -10.67792 -10.58339 -10.24593 -9.85855 -9.79432 -9.20506 -8.94415 -8.43085 -8.17674 -7.17737 -6.01546 -4.02340 0.71135 1.37623 2.45490 3.21337 3.31551 3.38986 3.44182 3.79155 4.28305 4.44561 4.66398 4.72242 4.96033 5.04693 5.15124 5.23538 5.27266 5.34998 5.38682 5.47504 5.55099 5.78624 5.92470 6.17345 6.21472 6.30877 6.36142 6.42810 6.56751 6.71770 6.88765 7.29844 7.30884 7.38202 7.41858 7.82259 8.10234 8.23801 8.57310 9.05864 9.61772 11.09406 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.021802 B = 0.004834 C = 0.004283 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1283.949203 B = 5790.424733 C = 6536.166889 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 O -0.298 6.298 3 C 0.170 3.830 4 C -0.227 4.227 5 C -0.026 4.026 6 C -0.239 4.239 7 C 0.390 3.610 8 O -0.478 6.478 9 C -0.013 4.013 10 C -0.108 4.108 11 C 0.098 3.902 12 N -0.535 5.535 13 C 0.043 3.957 14 C 0.192 3.808 15 C -0.504 4.504 16 H 0.063 0.937 17 C 0.055 3.945 18 N -0.899 5.899 19 Si 0.897 3.103 20 H -0.272 1.272 21 H -0.284 1.284 22 H -0.285 1.285 23 H 0.057 0.943 24 H 0.101 0.899 25 H 0.054 0.946 26 H 0.130 0.870 27 H 0.130 0.870 28 H 0.103 0.897 29 H 0.141 0.859 30 H 0.077 0.923 31 H 0.037 0.963 32 H 0.049 0.951 33 H 0.066 0.934 34 H 0.015 0.985 35 H 0.030 0.970 36 H -0.009 1.009 37 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.890 10.583 6.766 16.625 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.210 6.210 3 C 0.123 3.877 4 C -0.246 4.246 5 C -0.044 4.044 6 C -0.240 4.240 7 C 0.250 3.750 8 O -0.353 6.353 9 C -0.032 4.032 10 C -0.110 4.110 11 C -0.030 4.030 12 N -0.260 5.260 13 C -0.105 4.105 14 C 0.067 3.933 15 C -0.543 4.543 16 H 0.081 0.919 17 C -0.146 4.146 18 N -0.539 5.539 19 Si 0.725 3.275 20 H -0.197 1.197 21 H -0.210 1.210 22 H -0.212 1.212 23 H 0.075 0.925 24 H 0.119 0.881 25 H 0.073 0.927 26 H 0.148 0.852 27 H 0.147 0.853 28 H 0.119 0.881 29 H 0.158 0.842 30 H 0.096 0.904 31 H 0.055 0.945 32 H 0.067 0.933 33 H 0.084 0.916 34 H 0.033 0.967 35 H 0.048 0.952 36 H 0.009 0.991 37 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -10.871 11.130 6.473 16.851 hybrid contribution -0.310 -1.092 -0.434 1.215 sum -11.181 10.038 6.040 16.195 Atomic orbital electron populations 1.23102 0.78777 1.04169 1.01231 1.86328 1.21106 1.26506 1.87018 1.19236 0.92086 0.84273 0.92065 1.20905 1.00145 0.92207 1.11317 1.20824 0.93764 0.97278 0.92564 1.20739 0.94609 0.95855 1.12795 1.23909 0.95000 0.86544 0.69508 1.90497 1.69993 1.38417 1.36358 1.21169 1.00093 0.89898 0.92017 1.19381 0.90338 0.96559 1.04686 1.20875 0.97968 0.91747 0.92405 1.62210 1.08132 1.36859 1.18759 1.22317 0.89976 0.97779 1.00451 1.19747 0.89822 0.86242 0.97465 1.21201 1.23970 1.16962 0.92140 0.91853 1.24980 0.95900 0.96238 0.97504 1.69966 1.28015 1.23894 1.32055 0.86461 0.77976 0.78080 0.85027 1.19686 1.21006 1.21161 0.92455 0.88098 0.92742 0.85242 0.85250 0.88103 0.84167 0.90431 0.94507 0.93292 0.91565 0.96672 0.95239 0.99120 0.93021 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.21 9.80 101.05 0.99 1.20 16 2 O -0.30 -4.13 6.53 -18.69 -0.12 -4.25 16 3 C 0.17 2.41 5.42 -38.96 -0.21 2.20 16 4 C -0.23 -2.73 8.96 -39.87 -0.36 -3.09 16 5 C -0.03 -0.32 9.54 -39.50 -0.38 -0.69 16 6 C -0.24 -2.95 5.87 -105.06 -0.62 -3.57 16 7 C 0.39 4.37 11.44 34.22 0.39 4.77 16 8 O -0.48 -6.88 17.15 5.54 0.10 -6.79 16 9 C -0.01 -0.17 9.41 -39.12 -0.37 -0.54 16 10 C -0.11 -1.66 5.16 -104.52 -0.54 -2.19 16 11 C 0.10 1.76 4.99 -4.98 -0.02 1.73 16 12 N -0.54 -11.62 4.74 -245.82 -1.17 -12.79 16 13 C 0.04 0.87 7.86 60.06 0.47 1.34 16 14 C 0.19 5.00 4.72 -4.97 -0.02 4.97 16 15 C -0.50 -14.17 8.46 -34.44 -0.29 -14.46 16 16 H 0.06 1.78 7.12 -52.49 -0.37 1.41 16 17 C 0.05 1.55 5.46 -17.82 -0.10 1.45 16 18 N -0.90 -26.64 13.29 55.43 0.74 -25.90 16 19 Si 0.90 21.62 29.54 -169.99 -5.02 16.60 16 20 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 21 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 22 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 23 H 0.06 0.47 7.64 -51.93 -0.40 0.08 16 24 H 0.10 0.79 8.14 -51.93 -0.42 0.37 16 25 H 0.05 0.41 7.66 -51.93 -0.40 0.02 16 26 H 0.13 1.23 6.27 -52.49 -0.33 0.90 16 27 H 0.13 1.46 7.64 -52.48 -0.40 1.06 16 28 H 0.10 0.78 8.06 -52.49 -0.42 0.35 16 29 H 0.14 1.53 8.03 -52.48 -0.42 1.11 16 30 H 0.08 1.32 7.79 -51.93 -0.40 0.91 16 31 H 0.04 0.68 7.83 -51.93 -0.41 0.27 16 32 H 0.05 0.89 5.00 -51.93 -0.26 0.63 16 33 H 0.07 1.44 6.76 -51.93 -0.35 1.09 16 34 H 0.01 0.30 7.71 -51.93 -0.40 -0.10 16 35 H 0.03 0.80 7.93 -51.93 -0.41 0.39 16 36 H -0.01 -0.25 8.12 -51.93 -0.42 -0.67 16 37 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 LS Contribution 309.67 15.07 4.67 4.67 Total: -1.00 -32.63 309.67 -6.82 -39.45 By element: Atomic # 1 Polarization: 0.85 SS G_CDS: -4.96 Total: -4.10 kcal Atomic # 6 Polarization: -5.83 SS G_CDS: -1.05 Total: -6.88 kcal Atomic # 7 Polarization: -38.26 SS G_CDS: -0.43 Total: -38.69 kcal Atomic # 8 Polarization: -11.01 SS G_CDS: -0.03 Total: -11.04 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.02 Total: 16.60 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -32.63 -6.82 -39.45 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000050132711.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.493 kcal (2) G-P(sol) polarization free energy of solvation -32.633 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.141 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.819 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.452 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.960 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds