Wall clock time and date at job start Mon Mar 30 2020 05:04:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35664 * 116.99758 * 2 1 4 4 C 1.39073 * 119.88584 * 359.71724 * 3 2 1 5 5 C 1.36588 * 120.24348 * 179.76152 * 4 3 2 6 6 C 1.40034 * 120.00591 * 0.52225 * 5 4 3 7 7 C 1.46864 * 120.11480 * 179.76401 * 6 5 4 8 8 O 1.21300 * 119.99605 * 359.96676 * 7 6 5 9 9 C 1.40032 * 119.77417 * 359.73594 * 6 5 4 10 10 C 1.37659 * 119.75855 * 0.02562 * 9 6 5 11 11 C 1.50697 * 120.00764 * 179.97438 * 10 9 6 12 12 N 1.46904 * 109.47055 * 260.02379 * 11 10 9 13 13 C 1.46899 * 111.00088 * 293.95510 * 12 11 10 14 14 C 1.46901 * 110.99918 * 170.00019 * 12 11 10 15 15 C 1.50705 * 109.46877 * 190.00170 * 14 12 11 16 16 H 1.07998 * 120.00233 * 359.97438 * 15 14 12 17 17 C 1.37878 * 119.99625 * 180.02562 * 15 14 12 18 18 N 1.31511 * 120.00298 * 359.97438 * 17 15 14 19 19 Si 1.86807 * 119.99626 * 179.97438 * 17 15 14 20 20 H 1.48494 * 109.47143 * 359.97438 * 19 17 15 21 21 H 1.48499 * 109.46945 * 120.00043 * 19 17 15 22 22 H 1.48499 * 109.46820 * 239.99502 * 19 17 15 23 23 H 1.09001 * 109.47103 * 60.00802 * 1 2 3 24 24 H 1.09004 * 109.47054 * 180.02562 * 1 2 3 25 25 H 1.09000 * 109.47187 * 300.00362 * 1 2 3 26 26 H 1.08002 * 119.87995 * 0.02562 * 4 3 2 27 27 H 1.08003 * 119.99326 * 180.25492 * 5 4 3 28 28 H 1.07998 * 120.00105 * 179.97438 * 7 6 5 29 29 H 1.08003 * 120.12408 * 180.02562 * 9 6 5 30 30 H 1.08997 * 109.47349 * 20.01986 * 11 10 9 31 31 H 1.08995 * 109.47298 * 140.02267 * 11 10 9 32 32 H 1.09001 * 109.47037 * 59.99912 * 13 12 11 33 33 H 1.09000 * 109.47450 * 180.02562 * 13 12 11 34 34 H 1.09006 * 109.46650 * 300.00174 * 13 12 11 35 35 H 1.08994 * 109.47222 * 309.99827 * 14 12 11 36 36 H 1.08998 * 109.47146 * 69.99780 * 14 12 11 37 37 H 0.96999 * 119.99923 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0449 1.2088 0.0000 4 6 1.2851 2.3736 -0.0060 5 6 1.8975 3.5945 -0.0011 6 6 3.2954 3.6768 -0.0011 7 6 3.9564 4.9883 -0.0011 8 8 3.2912 6.0026 -0.0017 9 6 4.0610 2.5042 -0.0005 10 6 3.4339 1.2788 -0.0005 11 6 4.2523 0.0134 -0.0005 12 7 4.3167 -0.5281 -1.3645 13 6 2.9912 -0.9692 -1.8190 14 6 5.2938 -1.6217 -1.4512 15 6 5.5133 -1.9857 -2.8971 16 1 4.9800 -1.4578 -3.6738 17 6 6.3942 -2.9934 -3.2281 18 7 7.0432 -3.6366 -2.2822 19 14 6.6658 -3.4451 -5.0203 20 1 5.8219 -2.5791 -5.8823 21 1 8.0958 -3.2486 -5.3690 22 1 6.2951 -4.8671 -5.2339 23 1 -0.3633 0.5137 -0.8901 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5139 0.8899 26 1 0.2068 2.3126 -0.0101 27 1 1.3035 4.4965 -0.0016 28 1 5.0346 5.0495 -0.0007 29 1 5.1395 2.5611 -0.0001 30 1 5.2604 0.2326 0.3513 31 1 3.7884 -0.7193 0.6598 32 1 2.3042 -0.1229 -1.8110 33 1 3.0676 -1.3660 -2.8313 34 1 2.6184 -1.7462 -1.1517 35 1 6.2375 -1.3015 -1.0099 36 1 4.9162 -2.4899 -0.9112 37 1 7.6632 -4.3452 -2.5152 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000050132711.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:04:51 Heat of formation + Delta-G solvation = -57.637203 kcal Electronic energy + Delta-G solvation = -19601.334192 eV Core-core repulsion = 16536.754132 eV Total energy + Delta-G solvation = -3064.580059 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.58362 -39.96342 -38.39868 -37.70610 -34.77330 -32.79685 -31.66704 -29.17617 -28.66605 -27.73154 -25.72401 -25.15282 -23.13286 -22.28923 -20.98139 -19.04344 -18.50774 -17.86378 -17.25010 -17.14754 -16.65035 -16.10296 -15.73253 -15.54395 -15.48974 -15.17643 -14.97184 -14.52640 -14.05435 -13.77593 -13.51560 -13.42777 -13.20559 -12.86525 -12.74687 -12.55730 -12.49918 -12.36298 -12.02066 -11.73451 -11.62776 -11.23145 -10.72799 -10.60585 -9.98924 -9.24714 -8.93411 -8.18424 -6.28200 -0.25238 0.36209 1.42107 1.42769 1.52098 1.56503 2.32844 2.42058 2.78538 3.14117 3.45054 3.53399 3.70265 3.78609 4.11621 4.24927 4.34729 4.39316 4.46213 4.49704 4.59966 4.64885 4.73997 4.81881 4.84214 4.96614 5.12638 5.19180 5.25716 5.32690 5.35537 5.39908 5.66964 5.72667 6.06900 6.31954 6.40062 6.54774 6.64970 6.88100 7.41400 8.92702 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.021802 B = 0.004834 C = 0.004283 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1283.949203 B = 5790.424733 C = 6536.166889 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 O -0.324 6.324 3 C 0.162 3.838 4 C -0.222 4.222 5 C -0.029 4.029 6 C -0.244 4.244 7 C 0.398 3.602 8 O -0.511 6.511 9 C -0.008 4.008 10 C -0.137 4.137 11 C 0.104 3.896 12 N -0.541 5.541 13 C 0.055 3.945 14 C 0.207 3.793 15 C -0.521 4.521 16 H 0.060 0.940 17 C 0.003 3.997 18 N -0.934 5.934 19 Si 0.968 3.032 20 H -0.265 1.265 21 H -0.277 1.277 22 H -0.279 1.279 23 H 0.069 0.931 24 H 0.111 0.889 25 H 0.073 0.927 26 H 0.156 0.844 27 H 0.140 0.860 28 H 0.145 0.855 29 H 0.158 0.842 30 H 0.080 0.920 31 H 0.026 0.974 32 H 0.073 0.927 33 H 0.045 0.955 34 H 0.010 0.990 35 H 0.009 0.991 36 H -0.040 1.040 37 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.676 11.833 6.072 17.698 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 O -0.236 6.236 3 C 0.115 3.885 4 C -0.240 4.240 5 C -0.047 4.047 6 C -0.246 4.246 7 C 0.261 3.739 8 O -0.388 6.388 9 C -0.026 4.026 10 C -0.138 4.138 11 C -0.024 4.024 12 N -0.265 5.265 13 C -0.093 4.093 14 C 0.081 3.919 15 C -0.559 4.559 16 H 0.078 0.922 17 C -0.195 4.195 18 N -0.575 5.575 19 Si 0.793 3.207 20 H -0.189 1.189 21 H -0.202 1.202 22 H -0.205 1.205 23 H 0.087 0.913 24 H 0.130 0.870 25 H 0.091 0.909 26 H 0.174 0.826 27 H 0.158 0.842 28 H 0.161 0.839 29 H 0.176 0.824 30 H 0.098 0.902 31 H 0.044 0.956 32 H 0.091 0.909 33 H 0.064 0.936 34 H 0.028 0.972 35 H 0.028 0.972 36 H -0.023 1.023 37 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -11.674 12.390 5.789 17.981 hybrid contribution -0.139 -1.455 -0.140 1.468 sum -11.813 10.935 5.649 17.060 Atomic orbital electron populations 1.23398 0.76499 1.05499 1.02703 1.86275 1.23575 1.26803 1.86984 1.19366 0.91910 0.85076 0.92131 1.21126 1.01406 0.91240 1.10223 1.21104 0.94111 0.97791 0.91701 1.20958 0.94845 0.96276 1.12495 1.24410 0.96522 0.85242 0.67707 1.90498 1.70984 1.39230 1.38064 1.21331 1.01123 0.89286 0.90906 1.19246 0.90907 0.95807 1.07825 1.20810 0.98805 0.92853 0.89930 1.62141 1.08055 1.34761 1.21539 1.22213 0.89668 0.98504 0.98909 1.19406 0.90002 0.86392 0.96097 1.21477 1.24189 1.17335 0.92948 0.92151 1.25876 0.95426 0.95988 1.02193 1.70086 1.28580 1.24421 1.34400 0.85354 0.78111 0.77924 0.79343 1.18908 1.20244 1.20474 0.91271 0.87025 0.90869 0.82603 0.84236 0.83885 0.82412 0.90177 0.95583 0.90879 0.93589 0.97184 0.97244 1.02260 0.92687 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.21 9.80 113.37 1.11 1.33 16 2 O -0.32 -8.66 6.53 -89.80 -0.59 -9.24 16 3 C 0.16 4.37 5.42 22.67 0.12 4.49 16 4 C -0.22 -4.81 8.96 22.08 0.20 -4.61 16 5 C -0.03 -0.64 9.54 22.32 0.21 -0.42 16 6 C -0.24 -5.50 5.87 -20.15 -0.12 -5.62 16 7 C 0.40 7.90 11.44 70.08 0.80 8.70 16 8 O -0.51 -13.70 17.15 -3.09 -0.05 -13.75 16 9 C -0.01 -0.19 9.41 22.57 0.21 0.02 16 10 C -0.14 -4.06 5.16 -19.80 -0.10 -4.17 16 11 C 0.10 3.77 4.99 85.56 0.43 4.20 16 12 N -0.54 -23.93 4.74 -931.65 -4.42 -28.35 16 13 C 0.06 2.26 7.86 127.69 1.00 3.26 16 14 C 0.21 11.17 4.72 85.56 0.40 11.57 16 15 C -0.52 -29.82 8.46 25.60 0.22 -29.60 16 16 H 0.06 3.42 7.12 -2.91 -0.02 3.40 16 17 C 0.00 0.17 5.46 84.66 0.46 0.64 16 18 N -0.93 -56.21 13.29 21.45 0.28 -55.93 16 19 Si 0.97 44.36 29.54 68.60 2.03 46.39 16 20 H -0.26 -11.73 7.11 99.48 0.71 -11.02 16 21 H -0.28 -12.32 7.11 99.48 0.71 -11.61 16 22 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 23 H 0.07 0.97 7.64 -2.39 -0.02 0.95 16 24 H 0.11 1.56 8.14 -2.38 -0.02 1.55 16 25 H 0.07 0.92 7.66 -2.39 -0.02 0.91 16 26 H 0.16 2.45 6.27 -2.91 -0.02 2.43 16 27 H 0.14 2.82 7.64 -2.91 -0.02 2.80 16 28 H 0.15 1.66 8.06 -2.91 -0.02 1.64 16 29 H 0.16 3.14 8.03 -2.91 -0.02 3.12 16 30 H 0.08 2.79 7.79 -2.39 -0.02 2.77 16 31 H 0.03 0.99 7.83 -2.39 -0.02 0.97 16 32 H 0.07 2.62 5.00 -2.39 -0.01 2.61 16 33 H 0.05 2.03 6.76 -2.39 -0.02 2.01 16 34 H 0.01 0.40 7.71 -2.38 -0.02 0.38 16 35 H 0.01 0.54 7.93 -2.39 -0.02 0.52 16 36 H -0.04 -2.37 8.12 -2.39 -0.02 -2.39 16 37 H 0.26 14.88 8.31 -92.71 -0.77 14.11 16 Total: -1.00 -70.97 309.67 3.27 -67.70 By element: Atomic # 1 Polarization: 2.34 SS G_CDS: 1.06 Total: 3.41 kcal Atomic # 6 Polarization: -15.17 SS G_CDS: 4.95 Total: -10.22 kcal Atomic # 7 Polarization: -80.14 SS G_CDS: -4.14 Total: -84.28 kcal Atomic # 8 Polarization: -22.36 SS G_CDS: -0.64 Total: -23.00 kcal Atomic # 14 Polarization: 44.36 SS G_CDS: 2.03 Total: 46.39 kcal Total: -70.97 3.27 -67.70 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000050132711.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.062 kcal (2) G-P(sol) polarization free energy of solvation -70.968 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.906 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.268 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.700 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.637 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds