Wall clock time and date at job start Mon Mar 30 2020 05:24:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13592 * 1 3 3 C 1.47200 * 179.97438 * 2 1 4 4 C 1.52997 * 109.47533 * 118.66297 * 3 2 1 5 5 N 1.46501 * 109.47518 * 185.34495 * 4 3 2 6 6 C 1.46501 * 120.00209 * 87.65772 * 5 4 3 7 7 C 1.50698 * 109.47355 * 264.71099 * 6 5 4 8 8 H 1.07999 * 119.99635 * 359.97438 * 7 6 5 9 9 C 1.37872 * 119.99775 * 179.97438 * 7 6 5 10 10 N 1.31513 * 119.99685 * 180.02562 * 9 7 6 11 11 Si 1.86795 * 120.00223 * 359.72216 * 9 7 6 12 12 H 1.48505 * 109.47011 * 90.00173 * 11 9 7 13 13 H 1.48495 * 109.47460 * 209.99979 * 11 9 7 14 14 H 1.48502 * 109.47263 * 330.00563 * 11 9 7 15 15 C 1.34778 * 119.99817 * 267.66542 * 5 4 3 16 16 O 1.21284 * 120.00025 * 4.20463 * 15 5 4 17 17 C 1.50700 * 120.00017 * 184.20988 * 15 5 4 18 18 C 1.52999 * 119.52525 * 259.57912 * 17 15 5 19 19 C 1.53000 * 60.54451 * 248.25990 * 18 17 15 20 20 H 1.09000 * 120.23219 * 111.45559 * 19 18 17 21 21 C 1.54372 * 118.12909 * 268.32937 * 19 18 17 22 22 N 1.48562 * 104.59416 * 87.23230 * 21 19 18 23 23 C 1.47691 * 104.66291 * 321.22737 * 22 21 19 24 24 H 1.09011 * 109.47094 * 358.66171 * 3 2 1 25 25 H 1.09005 * 109.47401 * 238.66899 * 3 2 1 26 26 H 1.08999 * 109.46958 * 65.34226 * 4 3 2 27 27 H 1.08999 * 109.47023 * 305.34555 * 4 3 2 28 28 H 1.08999 * 109.46807 * 144.70586 * 6 5 4 29 29 H 1.09001 * 109.46861 * 24.71458 * 6 5 4 30 30 H 0.97006 * 119.99835 * 179.97438 * 10 9 7 31 31 H 1.08995 * 117.44267 * 355.90574 * 18 17 15 32 32 H 1.09000 * 117.44513 * 140.61485 * 18 17 15 33 33 H 1.09000 * 110.41665 * 206.00818 * 21 19 18 34 34 H 1.09001 * 110.41625 * 328.45159 * 21 19 18 35 35 H 1.00898 * 111.00083 * 200.96027 * 22 21 19 36 36 H 1.08998 * 109.12623 * 279.90905 * 23 22 21 37 37 H 1.09002 * 111.27929 * 157.75488 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.6079 0.0007 0.0000 4 6 3.1177 0.6928 -1.2657 5 7 4.5771 0.5815 -1.3291 6 6 5.1959 -0.5891 -1.9561 7 6 5.5303 -1.6081 -0.8974 8 1 5.3048 -1.4040 0.1388 9 6 6.1241 -2.8009 -1.2519 10 7 6.4154 -3.6904 -0.3280 11 14 6.5070 -3.1570 -3.0451 12 1 7.8720 -2.6682 -3.3663 13 1 6.4362 -4.6208 -3.2852 14 1 5.5174 -2.4652 -3.9095 15 6 5.3504 1.5559 -0.8106 16 8 4.8406 2.4872 -0.2242 17 6 6.8485 1.4885 -0.9594 18 6 7.7013 0.9980 0.2124 19 6 7.7837 2.4644 -0.2161 20 1 7.3957 3.2488 0.4337 21 6 8.8564 2.8604 -1.2532 22 7 8.2066 2.6324 -2.5696 23 6 7.4218 1.3943 -2.3897 24 1 2.9717 -1.0267 0.0240 25 1 2.9711 0.5352 0.8778 26 1 2.8342 1.7450 -1.2437 27 1 2.6786 0.2164 -2.1422 28 1 6.1082 -0.2862 -2.4700 29 1 4.5022 -1.0257 -2.6746 30 1 6.8328 -4.5298 -0.5774 31 1 7.1888 0.7763 1.1485 32 1 8.5529 0.3583 -0.0191 33 1 9.1263 3.9103 -1.1393 34 1 9.7376 2.2272 -1.1496 35 1 8.8953 2.5285 -3.2997 36 1 8.0859 0.5345 -2.4772 37 1 6.6145 1.3282 -3.1192 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000693284617.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:24:31 Heat of formation + Delta-G solvation = 36.219307 kcal Electronic energy + Delta-G solvation = -20345.721009 eV Core-core repulsion = 17317.503625 eV Total energy + Delta-G solvation = -3028.217385 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.137 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.33396 -38.21051 -36.51647 -35.31827 -32.90093 -32.64903 -31.31184 -28.35407 -27.93166 -24.65244 -23.72421 -22.80349 -21.14360 -20.24241 -18.24859 -17.48908 -16.79833 -16.56417 -15.86932 -15.48586 -14.83111 -14.56872 -14.39095 -13.98685 -13.41799 -13.36042 -13.04470 -12.89460 -12.63118 -12.39174 -12.19745 -12.10228 -11.85315 -11.58307 -11.49869 -11.13680 -11.06929 -10.77149 -10.51539 -10.32950 -10.15015 -9.76755 -9.64708 -9.14829 -8.78329 -8.41715 -7.97307 -6.28238 -4.29017 2.91145 3.06546 3.09425 3.15707 3.18439 3.21629 3.51570 3.97057 4.19683 4.35766 4.44366 4.66264 4.94024 5.01159 5.07428 5.30678 5.35389 5.39280 5.45358 5.64021 5.73753 5.78443 5.95435 6.05193 6.10038 6.15060 6.25132 6.28422 6.39202 6.46562 6.54628 6.76714 7.17972 7.35498 7.37369 7.81797 7.96953 8.29760 8.72649 8.80113 9.31299 10.83891 Molecular weight = 263.14amu Principal moments of inertia in cm(-1) A = 0.012349 B = 0.009672 C = 0.006276 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2266.908928 B = 2894.339054 C = 4460.198114 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.458 5.458 2 C 0.223 3.777 3 C -0.050 4.050 4 C 0.131 3.869 5 N -0.588 5.588 6 C 0.200 3.800 7 C -0.534 4.534 8 H 0.081 0.919 9 C 0.079 3.921 10 N -0.889 5.889 11 Si 0.864 3.136 12 H -0.275 1.275 13 H -0.284 1.284 14 H -0.264 1.264 15 C 0.570 3.430 16 O -0.560 6.560 17 C -0.147 4.147 18 C -0.097 4.097 19 C -0.149 4.149 20 H 0.121 0.879 21 C 0.067 3.933 22 N -0.672 5.672 23 C 0.081 3.919 24 H 0.130 0.870 25 H 0.108 0.892 26 H 0.082 0.918 27 H 0.080 0.920 28 H 0.038 0.962 29 H 0.035 0.965 30 H 0.266 0.734 31 H 0.107 0.893 32 H 0.099 0.901 33 H 0.083 0.917 34 H 0.044 0.956 35 H 0.337 0.663 36 H 0.050 0.950 37 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.913 7.660 -3.529 9.761 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.136 5.136 2 C -0.094 4.094 3 C -0.091 4.091 4 C 0.006 3.994 5 N -0.318 5.318 6 C 0.080 3.920 7 C -0.573 4.573 8 H 0.099 0.901 9 C -0.125 4.125 10 N -0.526 5.526 11 Si 0.691 3.309 12 H -0.200 1.200 13 H -0.210 1.210 14 H -0.188 1.188 15 C 0.358 3.642 16 O -0.440 6.440 17 C -0.151 4.151 18 C -0.134 4.134 19 C -0.168 4.168 20 H 0.139 0.861 21 C -0.062 4.062 22 N -0.301 5.301 23 C -0.048 4.048 24 H 0.148 0.852 25 H 0.126 0.874 26 H 0.101 0.899 27 H 0.098 0.902 28 H 0.056 0.944 29 H 0.053 0.947 30 H 0.076 0.924 31 H 0.125 0.875 32 H 0.117 0.883 33 H 0.102 0.898 34 H 0.062 0.938 35 H 0.153 0.847 36 H 0.068 0.932 37 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 2.464 8.433 -3.180 9.343 hybrid contribution 1.401 -1.371 -0.904 2.159 sum 3.865 7.061 -4.084 9.027 Atomic orbital electron populations 1.81150 1.13154 1.10033 1.09225 1.29279 0.95248 0.92229 0.92653 1.19882 0.80751 1.06561 1.01882 1.21123 0.81086 1.01107 0.96102 1.47788 1.04738 1.21415 1.57840 1.20062 0.94070 0.83406 0.94508 1.21306 1.40979 0.99913 0.95063 0.90068 1.24814 0.94943 0.95896 0.96810 1.69874 1.41655 1.08206 1.32878 0.87038 0.79426 0.78278 0.86149 1.20035 1.20975 1.18827 1.19055 0.86809 0.80970 0.77327 1.90621 1.74927 1.35162 1.43280 1.22047 0.91197 1.08312 0.93526 1.22973 0.99989 0.93663 0.96823 1.23592 0.98087 0.93982 1.01155 0.86083 1.22420 0.94407 1.01151 0.88211 1.63324 1.25723 1.35355 1.05739 1.22222 0.97493 0.90856 0.94216 0.85230 0.87406 0.89930 0.90185 0.94418 0.94704 0.92388 0.87497 0.88302 0.89830 0.93802 0.84699 0.93164 0.89321 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.46 -8.06 18.54 42.15 0.78 -7.28 16 2 C 0.22 3.49 15.43 -20.76 -0.32 3.17 16 3 C -0.05 -0.74 6.03 -29.52 -0.18 -0.91 16 4 C 0.13 2.02 5.40 -4.04 -0.02 2.00 16 5 N -0.59 -10.53 2.47 -175.06 -0.43 -10.96 16 6 C 0.20 3.88 3.96 -5.19 -0.02 3.86 16 7 C -0.53 -12.27 9.38 -34.44 -0.32 -12.60 16 8 H 0.08 2.06 7.96 -52.49 -0.42 1.64 16 9 C 0.08 1.94 5.47 -17.82 -0.10 1.84 16 10 N -0.89 -23.82 13.96 55.43 0.77 -23.05 16 11 Si 0.86 18.32 27.47 -169.99 -4.67 13.65 16 12 H -0.27 -5.71 7.11 56.52 0.40 -5.31 16 13 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 14 H -0.26 -5.28 6.54 56.52 0.37 -4.91 16 15 C 0.57 10.74 7.17 -10.98 -0.08 10.66 16 16 O -0.56 -11.64 16.42 5.55 0.09 -11.55 16 17 C -0.15 -2.49 1.98 -154.28 -0.31 -2.80 16 18 C -0.10 -1.54 9.89 -26.73 -0.26 -1.80 16 19 C -0.15 -2.20 6.78 -89.24 -0.61 -2.81 16 20 H 0.12 1.82 8.14 -51.93 -0.42 1.40 16 21 C 0.07 0.83 7.29 -2.19 -0.02 0.82 16 22 N -0.67 -9.00 7.57 -110.33 -0.83 -9.83 16 23 C 0.08 1.24 5.19 -2.67 -0.01 1.23 16 24 H 0.13 2.08 7.52 -51.92 -0.39 1.69 16 25 H 0.11 1.60 8.14 -51.93 -0.42 1.17 16 26 H 0.08 1.27 7.41 -51.93 -0.38 0.88 16 27 H 0.08 1.11 7.89 -51.93 -0.41 0.70 16 28 H 0.04 0.72 3.77 -51.93 -0.20 0.52 16 29 H 0.04 0.67 6.90 -51.93 -0.36 0.31 16 30 H 0.27 6.79 8.31 -40.82 -0.34 6.46 16 31 H 0.11 1.76 8.14 -51.93 -0.42 1.34 16 32 H 0.10 1.52 8.14 -51.93 -0.42 1.09 16 33 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 34 H 0.04 0.49 8.14 -51.93 -0.42 0.07 16 35 H 0.34 3.65 8.93 -39.29 -0.35 3.30 16 36 H 0.05 0.77 8.08 -51.93 -0.42 0.35 16 37 H 0.09 1.39 7.00 -51.93 -0.36 1.03 16 LS Contribution 313.75 15.07 4.73 4.73 Total: -1.00 -28.39 313.75 -6.80 -35.20 By element: Atomic # 1 Polarization: 11.42 SS G_CDS: -4.99 Total: 6.43 kcal Atomic # 6 Polarization: 4.91 SS G_CDS: -2.25 Total: 2.66 kcal Atomic # 7 Polarization: -51.41 SS G_CDS: 0.29 Total: -51.12 kcal Atomic # 8 Polarization: -11.64 SS G_CDS: 0.09 Total: -11.55 kcal Atomic # 14 Polarization: 18.32 SS G_CDS: -4.67 Total: 13.65 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -28.39 -6.80 -35.20 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000693284617.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.416 kcal (2) G-P(sol) polarization free energy of solvation -28.395 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.021 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.802 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.197 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.219 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds