Wall clock time and date at job start Mon Mar 30 2020 05:24:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13592 * 1 3 3 C 1.47200 * 179.97438 * 2 1 4 4 C 1.52997 * 109.47533 * 118.66297 * 3 2 1 5 5 N 1.46501 * 109.47518 * 185.34495 * 4 3 2 6 6 C 1.46501 * 120.00209 * 87.65772 * 5 4 3 7 7 C 1.50698 * 109.47355 * 264.71099 * 6 5 4 8 8 H 1.07999 * 119.99635 * 359.97438 * 7 6 5 9 9 C 1.37872 * 119.99775 * 179.97438 * 7 6 5 10 10 N 1.31513 * 119.99685 * 180.02562 * 9 7 6 11 11 Si 1.86795 * 120.00223 * 359.72216 * 9 7 6 12 12 H 1.48505 * 109.47011 * 90.00173 * 11 9 7 13 13 H 1.48495 * 109.47460 * 209.99979 * 11 9 7 14 14 H 1.48502 * 109.47263 * 330.00563 * 11 9 7 15 15 C 1.34778 * 119.99817 * 267.66542 * 5 4 3 16 16 O 1.21284 * 120.00025 * 4.20463 * 15 5 4 17 17 C 1.50700 * 120.00017 * 184.20988 * 15 5 4 18 18 C 1.52999 * 119.52525 * 259.57912 * 17 15 5 19 19 C 1.53000 * 60.54451 * 248.25990 * 18 17 15 20 20 H 1.09000 * 120.23219 * 111.45559 * 19 18 17 21 21 C 1.54372 * 118.12909 * 268.32937 * 19 18 17 22 22 N 1.48562 * 104.59416 * 87.23230 * 21 19 18 23 23 C 1.47691 * 104.66291 * 321.22737 * 22 21 19 24 24 H 1.09011 * 109.47094 * 358.66171 * 3 2 1 25 25 H 1.09005 * 109.47401 * 238.66899 * 3 2 1 26 26 H 1.08999 * 109.46958 * 65.34226 * 4 3 2 27 27 H 1.08999 * 109.47023 * 305.34555 * 4 3 2 28 28 H 1.08999 * 109.46807 * 144.70586 * 6 5 4 29 29 H 1.09001 * 109.46861 * 24.71458 * 6 5 4 30 30 H 0.97006 * 119.99835 * 179.97438 * 10 9 7 31 31 H 1.08995 * 117.44267 * 355.90574 * 18 17 15 32 32 H 1.09000 * 117.44513 * 140.61485 * 18 17 15 33 33 H 1.09000 * 110.41665 * 206.00818 * 21 19 18 34 34 H 1.09001 * 110.41625 * 328.45159 * 21 19 18 35 35 H 1.00898 * 111.00083 * 200.96027 * 22 21 19 36 36 H 1.08998 * 109.12623 * 279.90905 * 23 22 21 37 37 H 1.09002 * 111.27929 * 157.75488 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.6079 0.0007 0.0000 4 6 3.1177 0.6928 -1.2657 5 7 4.5771 0.5815 -1.3291 6 6 5.1959 -0.5891 -1.9561 7 6 5.5303 -1.6081 -0.8974 8 1 5.3048 -1.4040 0.1388 9 6 6.1241 -2.8009 -1.2519 10 7 6.4154 -3.6904 -0.3280 11 14 6.5070 -3.1570 -3.0451 12 1 7.8720 -2.6682 -3.3663 13 1 6.4362 -4.6208 -3.2852 14 1 5.5174 -2.4652 -3.9095 15 6 5.3504 1.5559 -0.8106 16 8 4.8406 2.4872 -0.2242 17 6 6.8485 1.4885 -0.9594 18 6 7.7013 0.9980 0.2124 19 6 7.7837 2.4644 -0.2161 20 1 7.3957 3.2488 0.4337 21 6 8.8564 2.8604 -1.2532 22 7 8.2066 2.6324 -2.5696 23 6 7.4218 1.3943 -2.3897 24 1 2.9717 -1.0267 0.0240 25 1 2.9711 0.5352 0.8778 26 1 2.8342 1.7450 -1.2437 27 1 2.6786 0.2164 -2.1422 28 1 6.1082 -0.2862 -2.4700 29 1 4.5022 -1.0257 -2.6746 30 1 6.8328 -4.5298 -0.5774 31 1 7.1888 0.7763 1.1485 32 1 8.5529 0.3583 -0.0191 33 1 9.1263 3.9103 -1.1393 34 1 9.7376 2.2272 -1.1496 35 1 8.8953 2.5285 -3.2997 36 1 8.0859 0.5345 -2.4772 37 1 6.6145 1.3282 -3.1192 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000693284617.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:24:30 Heat of formation + Delta-G solvation = 17.509668 kcal Electronic energy + Delta-G solvation = -20346.532320 eV Core-core repulsion = 17317.503625 eV Total energy + Delta-G solvation = -3029.028695 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.137 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.64711 -39.52181 -37.89260 -36.82543 -34.56242 -33.91849 -32.72716 -29.62609 -29.50000 -25.94937 -24.93324 -24.47089 -22.46785 -21.40533 -19.61669 -19.09493 -18.31264 -17.93519 -17.28175 -16.67022 -16.19153 -16.13112 -15.77560 -15.33385 -14.69769 -14.68070 -14.43605 -14.28862 -14.05382 -13.83871 -13.55260 -13.50804 -13.11459 -12.99794 -12.85098 -12.66483 -12.35241 -12.23296 -11.94079 -11.83338 -11.53032 -11.37097 -10.98791 -10.67750 -10.54420 -9.49744 -9.45151 -8.16403 -6.19792 1.44389 1.49705 1.53908 1.55868 1.75405 1.76712 2.15008 2.43545 2.70823 3.11640 3.18445 3.32427 3.47960 3.71468 3.75435 4.11388 4.12226 4.19076 4.26099 4.51421 4.53135 4.67001 4.76058 4.78807 4.86504 4.89864 4.93480 4.98484 5.05358 5.07861 5.27424 5.56613 5.67925 5.71381 6.30111 6.46875 6.51606 6.60143 6.85904 7.28882 7.45166 8.98620 Molecular weight = 263.14amu Principal moments of inertia in cm(-1) A = 0.012349 B = 0.009672 C = 0.006276 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2266.908928 B = 2894.339054 C = 4460.198114 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.486 5.486 2 C 0.246 3.754 3 C -0.035 4.035 4 C 0.126 3.874 5 N -0.588 5.588 6 C 0.206 3.794 7 C -0.517 4.517 8 H 0.046 0.954 9 C 0.027 3.973 10 N -0.940 5.940 11 Si 0.919 3.081 12 H -0.264 1.264 13 H -0.297 1.297 14 H -0.238 1.238 15 C 0.564 3.436 16 O -0.585 6.585 17 C -0.173 4.173 18 C -0.101 4.101 19 C -0.134 4.134 20 H 0.116 0.884 21 C 0.071 3.929 22 N -0.675 5.675 23 C 0.085 3.915 24 H 0.119 0.881 25 H 0.108 0.892 26 H 0.086 0.914 27 H 0.101 0.899 28 H 0.052 0.948 29 H 0.049 0.951 30 H 0.263 0.737 31 H 0.091 0.909 32 H 0.104 0.896 33 H 0.102 0.898 34 H 0.061 0.939 35 H 0.354 0.646 36 H 0.051 0.949 37 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.684 8.711 -5.497 11.764 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.164 5.164 2 C -0.071 4.071 3 C -0.076 4.076 4 C 0.001 3.999 5 N -0.317 5.317 6 C 0.084 3.916 7 C -0.555 4.555 8 H 0.065 0.935 9 C -0.172 4.172 10 N -0.581 5.581 11 Si 0.744 3.256 12 H -0.189 1.189 13 H -0.223 1.223 14 H -0.161 1.161 15 C 0.354 3.646 16 O -0.466 6.466 17 C -0.177 4.177 18 C -0.139 4.139 19 C -0.153 4.153 20 H 0.134 0.866 21 C -0.058 4.058 22 N -0.307 5.307 23 C -0.044 4.044 24 H 0.137 0.863 25 H 0.126 0.874 26 H 0.104 0.896 27 H 0.119 0.881 28 H 0.070 0.930 29 H 0.067 0.933 30 H 0.072 0.928 31 H 0.109 0.891 32 H 0.122 0.878 33 H 0.120 0.880 34 H 0.079 0.921 35 H 0.172 0.828 36 H 0.069 0.931 37 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 3.228 9.511 -5.171 11.297 hybrid contribution 1.139 -1.645 -0.189 2.010 sum 4.367 7.866 -5.360 10.472 Atomic orbital electron populations 1.81178 1.13956 1.11048 1.10261 1.29190 0.94962 0.91242 0.91675 1.19718 0.80173 1.05793 1.01947 1.21310 0.79911 1.01667 0.96962 1.47789 1.05686 1.20708 1.57475 1.19945 0.95118 0.82948 0.93543 1.21418 1.39284 1.00381 0.94445 0.93544 1.25531 0.95186 0.95834 1.00668 1.70029 1.43896 1.08928 1.35205 0.86138 0.80329 0.77474 0.81687 1.18943 1.22343 1.16108 1.19444 0.87778 0.80669 0.76745 1.90598 1.75623 1.36087 1.44319 1.22208 0.90289 1.10210 0.94951 1.22916 0.99908 0.95097 0.95990 1.23685 0.97919 0.92928 1.00761 0.86610 1.22493 0.93854 1.02625 0.86786 1.63277 1.26555 1.34208 1.06649 1.22132 0.97638 0.91817 0.92795 0.86287 0.87397 0.89556 0.88075 0.93046 0.93270 0.92779 0.89073 0.87798 0.87961 0.92115 0.82802 0.93070 0.89631 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.49 -16.71 18.54 20.00 0.37 -16.34 16 2 C 0.25 7.48 15.43 89.44 1.38 8.86 16 3 C -0.04 -1.02 6.03 28.79 0.17 -0.85 16 4 C 0.13 3.70 5.40 86.38 0.47 4.16 16 5 N -0.59 -20.28 2.47 -826.16 -2.04 -22.32 16 6 C 0.21 7.58 3.96 85.63 0.34 7.92 16 7 C -0.52 -23.59 9.38 25.60 0.24 -23.35 16 8 H 0.05 2.42 7.96 -2.91 -0.02 2.39 16 9 C 0.03 1.29 5.47 84.65 0.46 1.76 16 10 N -0.94 -51.39 13.96 21.45 0.30 -51.09 16 11 Si 0.92 36.42 27.47 68.60 1.88 38.30 16 12 H -0.26 -10.01 7.11 99.48 0.71 -9.30 16 13 H -0.30 -12.37 7.11 99.48 0.71 -11.66 16 14 H -0.24 -8.37 6.54 99.48 0.65 -7.72 16 15 C 0.56 20.79 7.17 87.66 0.63 21.42 16 16 O -0.58 -24.00 16.42 -3.04 -0.05 -24.05 16 17 C -0.17 -5.64 1.98 -52.03 -0.10 -5.74 16 18 C -0.10 -3.18 9.89 30.59 0.30 -2.88 16 19 C -0.13 -3.75 6.78 -9.90 -0.07 -3.82 16 20 H 0.12 3.37 8.14 -2.39 -0.02 3.35 16 21 C 0.07 1.55 7.29 86.45 0.63 2.18 16 22 N -0.68 -16.00 7.57 -502.97 -3.81 -19.81 16 23 C 0.09 2.41 5.19 86.62 0.45 2.86 16 24 H 0.12 3.82 7.52 -2.38 -0.02 3.80 16 25 H 0.11 3.18 8.14 -2.38 -0.02 3.16 16 26 H 0.09 2.52 7.41 -2.39 -0.02 2.50 16 27 H 0.10 2.55 7.89 -2.39 -0.02 2.53 16 28 H 0.05 1.81 3.77 -2.39 -0.01 1.80 16 29 H 0.05 1.72 6.90 -2.39 -0.02 1.70 16 30 H 0.26 13.76 8.31 -92.70 -0.77 12.99 16 31 H 0.09 3.09 8.14 -2.39 -0.02 3.07 16 32 H 0.10 3.11 8.14 -2.39 -0.02 3.09 16 33 H 0.10 1.90 8.14 -2.39 -0.02 1.88 16 34 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 35 H 0.35 6.42 8.93 -89.70 -0.80 5.62 16 36 H 0.05 1.42 8.08 -2.39 -0.02 1.40 16 37 H 0.09 2.45 7.00 -2.39 -0.02 2.43 16 Total: -1.00 -60.42 313.75 1.80 -58.62 By element: Atomic # 1 Polarization: 23.94 SS G_CDS: 0.24 Total: 24.18 kcal Atomic # 6 Polarization: 7.61 SS G_CDS: 4.90 Total: 12.51 kcal Atomic # 7 Polarization: -104.39 SS G_CDS: -5.18 Total: -109.56 kcal Atomic # 8 Polarization: -24.00 SS G_CDS: -0.05 Total: -24.05 kcal Atomic # 14 Polarization: 36.42 SS G_CDS: 1.88 Total: 38.30 kcal Total: -60.42 1.80 -58.62 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000693284617.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.134 kcal (2) G-P(sol) polarization free energy of solvation -60.422 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.712 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.798 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.625 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.510 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds