Wall clock time and date at job start Mon Mar 30 2020 04:33:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 109.47353 * 2 1 4 4 C 1.52999 * 109.47491 * 239.99225 * 2 1 3 5 5 C 1.50705 * 109.47010 * 119.99421 * 2 1 3 6 6 N 1.32343 * 120.45052 * 250.80302 * 5 2 1 7 7 C 1.31781 * 120.82261 * 180.28577 * 6 5 2 8 8 N 1.31815 * 121.75102 * 359.70995 * 7 6 5 9 9 C 1.32316 * 120.81570 * 359.97438 * 8 7 6 10 10 C 1.38578 * 120.44801 * 70.52028 * 5 2 1 11 11 C 1.50703 * 120.79784 * 359.97438 * 10 5 2 12 12 N 1.46506 * 109.47132 * 85.29599 * 11 10 5 13 13 C 1.34773 * 120.00245 * 176.39374 * 12 11 10 14 14 O 1.21693 * 119.99976 * 0.02562 * 13 12 11 15 15 C 1.46375 * 120.00249 * 179.97438 * 13 12 11 16 16 H 1.07993 * 119.99822 * 0.02562 * 15 13 12 17 17 C 1.40050 * 119.99851 * 180.02562 * 15 13 12 18 18 N 1.30670 * 119.99950 * 359.97438 * 17 15 13 19 19 Si 1.86800 * 119.99837 * 180.02562 * 17 15 13 20 20 H 1.48504 * 109.47349 * 59.99276 * 19 17 15 21 21 H 1.48499 * 109.47233 * 179.97438 * 19 17 15 22 22 H 1.48502 * 109.46762 * 299.99799 * 19 17 15 23 23 H 1.08998 * 109.47222 * 293.75106 * 1 2 3 24 24 H 1.09003 * 109.46754 * 53.74970 * 1 2 3 25 25 H 1.08997 * 109.47256 * 173.75356 * 1 2 3 26 26 H 1.08996 * 109.47420 * 180.02562 * 3 2 1 27 27 H 1.09003 * 109.46743 * 299.99415 * 3 2 1 28 28 H 1.08992 * 109.47478 * 59.99475 * 3 2 1 29 29 H 1.08994 * 109.46904 * 317.52462 * 4 2 1 30 30 H 1.09006 * 109.46642 * 77.51678 * 4 2 1 31 31 H 1.08997 * 109.47578 * 197.51812 * 4 2 1 32 32 H 1.08003 * 119.12389 * 179.68367 * 7 6 5 33 33 H 1.08000 * 120.44577 * 180.02562 * 9 8 7 34 34 H 1.08993 * 109.47191 * 325.29962 * 11 10 5 35 35 H 1.09002 * 109.47482 * 205.29151 * 11 10 5 36 36 H 0.97004 * 119.99573 * 356.11596 * 12 11 10 37 37 H 0.97003 * 119.99765 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0401 -0.7214 -1.2491 5 6 2.0323 -0.7103 1.2306 6 7 2.6096 -0.0308 2.2086 7 6 3.0565 -0.6451 3.2854 8 7 2.9442 -1.9497 3.4366 9 6 2.3729 -2.6936 2.5033 10 6 1.8908 -2.0831 1.3560 11 6 1.2332 -2.8935 0.2688 12 7 2.2275 -3.2432 -0.7489 13 6 1.8820 -4.0318 -1.7857 14 8 0.7440 -4.4532 -1.8769 15 6 2.8752 -4.3807 -2.8027 16 1 3.8850 -4.0065 -2.7221 17 6 2.5159 -5.1998 -3.8804 18 7 1.2942 -5.6530 -3.9777 19 14 3.7836 -5.6456 -5.1780 20 1 4.9130 -6.3679 -4.5391 21 1 3.1565 -6.5168 -6.2040 22 1 4.2894 -4.4067 -5.8219 23 1 -0.3633 0.4139 0.9406 24 1 -0.3633 0.6077 -0.8288 25 1 -0.3633 -1.0215 -0.1118 26 1 3.1300 1.4425 -0.0005 27 1 1.6768 1.9563 -0.8901 28 1 1.6767 1.9564 0.8898 29 1 1.4466 -1.6200 -1.4175 30 1 1.9518 -0.0608 -2.1117 31 1 3.0851 -0.9972 -1.1082 32 1 3.5277 -0.0643 4.0645 33 1 2.2836 -3.7620 2.6335 34 1 0.4356 -2.3083 -0.1887 35 1 0.8157 -3.8049 0.6969 36 1 3.1335 -2.9037 -0.6785 37 1 1.0455 -6.2206 -4.7240 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000096787569.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:33:38 Heat of formation + Delta-G solvation = 16.361364 kcal Electronic energy + Delta-G solvation = -20308.588492 eV Core-core repulsion = 17279.510003 eV Total energy + Delta-G solvation = -3029.078490 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.137 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.32475 -37.98036 -36.73156 -34.24778 -32.78813 -32.39929 -31.13645 -27.68384 -27.00874 -26.72198 -25.31123 -24.41312 -22.34733 -19.93538 -19.72890 -17.54139 -17.49558 -16.61078 -15.45038 -15.08764 -14.71347 -14.46573 -14.26396 -14.12473 -13.66325 -13.47810 -13.27830 -12.91817 -12.31893 -12.17209 -11.87851 -11.57283 -11.35554 -11.25226 -11.18482 -10.94156 -10.89421 -10.65341 -10.46356 -10.37809 -10.28444 -10.26127 -9.33436 -9.05021 -8.89166 -7.69354 -7.53303 -6.24680 -4.70493 0.95171 1.15410 3.12589 3.18143 3.19585 3.79692 4.02055 4.07718 4.24788 4.50950 4.52040 4.81113 4.93958 5.05964 5.11628 5.14267 5.28015 5.53027 5.64198 5.73501 5.76636 5.88445 5.92708 6.01026 6.10918 6.22878 6.27275 6.30203 6.39862 6.51750 6.57494 6.88842 7.07191 7.37862 7.79497 7.95243 8.15666 8.24471 8.96643 9.40393 10.51872 10.69829 Molecular weight = 263.14amu Principal moments of inertia in cm(-1) A = 0.025247 B = 0.005570 C = 0.005226 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1108.795770 B = 5025.385156 C = 5356.047160 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.022 4.022 3 C -0.125 4.125 4 C -0.161 4.161 5 C 0.201 3.799 6 N -0.518 5.518 7 C 0.284 3.716 8 N -0.528 5.528 9 C 0.158 3.842 10 C -0.188 4.188 11 C 0.166 3.834 12 N -0.759 5.759 13 C 0.555 3.445 14 O -0.578 6.578 15 C -0.543 4.543 16 H 0.067 0.933 17 C 0.089 3.911 18 N -0.766 5.766 19 Si 0.907 3.093 20 H -0.268 1.268 21 H -0.280 1.280 22 H -0.268 1.268 23 H 0.052 0.948 24 H 0.067 0.933 25 H 0.071 0.929 26 H 0.055 0.945 27 H 0.054 0.946 28 H 0.059 0.941 29 H 0.106 0.894 30 H 0.056 0.944 31 H 0.053 0.947 32 H 0.192 0.808 33 H 0.168 0.832 34 H 0.076 0.924 35 H 0.063 0.937 36 H 0.381 0.619 37 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.913 10.285 8.485 13.470 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.023 4.023 3 C -0.182 4.182 4 C -0.219 4.219 5 C 0.054 3.946 6 N -0.232 5.232 7 C -0.004 4.004 8 N -0.241 5.241 9 C -0.007 4.007 10 C -0.193 4.193 11 C 0.041 3.959 12 N -0.416 5.416 13 C 0.360 3.640 14 O -0.461 6.461 15 C -0.580 4.580 16 H 0.085 0.915 17 C -0.131 4.131 18 N -0.395 5.395 19 Si 0.731 3.269 20 H -0.193 1.193 21 H -0.205 1.205 22 H -0.193 1.193 23 H 0.071 0.929 24 H 0.086 0.914 25 H 0.090 0.910 26 H 0.074 0.926 27 H 0.073 0.927 28 H 0.078 0.922 29 H 0.124 0.876 30 H 0.075 0.925 31 H 0.072 0.928 32 H 0.208 0.792 33 H 0.185 0.815 34 H 0.094 0.906 35 H 0.081 0.919 36 H 0.214 0.786 37 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 1.352 10.374 9.053 13.834 hybrid contribution 0.860 -0.545 -1.016 1.439 sum 2.212 9.829 8.036 12.887 Atomic orbital electron populations 1.22052 0.92967 1.03250 1.01959 1.19639 0.96007 0.95726 0.90916 1.21686 1.01167 0.93957 1.01383 1.22723 1.02244 1.02491 0.94401 1.21644 0.89305 0.90125 0.93478 1.68246 1.11615 1.41324 1.01969 1.24892 0.93186 0.88379 0.93971 1.68402 1.16414 1.07950 1.31374 1.23219 0.89036 1.00616 0.87865 1.21803 1.02568 0.95908 0.99001 1.19998 0.92276 0.96870 0.86760 1.46548 1.12178 1.56620 1.26302 1.18208 0.88753 0.77080 0.79991 1.90620 1.21839 1.56456 1.77161 1.20817 0.96893 1.32685 1.07639 0.91521 1.25680 0.95325 0.94183 0.97919 1.69997 1.17583 1.24509 1.27383 0.86449 0.81139 0.79000 0.80278 1.19313 1.20525 1.19259 0.92865 0.91367 0.90999 0.92621 0.92703 0.92186 0.87559 0.92531 0.92817 0.79186 0.81496 0.90608 0.91859 0.78608 0.91980 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.87 8.26 37.16 0.31 -1.57 16 2 C -0.02 -0.30 0.75 -155.66 -0.12 -0.42 16 3 C -0.12 -1.53 7.71 37.16 0.29 -1.25 16 4 C -0.16 -2.52 6.86 37.16 0.25 -2.27 16 5 C 0.20 2.96 5.49 -82.24 -0.45 2.51 16 6 N -0.52 -7.34 9.18 -10.80 -0.10 -7.44 16 7 C 0.28 3.69 12.29 -92.15 -1.13 2.55 16 8 N -0.53 -7.47 10.44 -14.58 -0.15 -7.62 16 9 C 0.16 2.26 10.99 -17.21 -0.19 2.07 16 10 C -0.19 -2.86 5.11 -104.36 -0.53 -3.39 16 11 C 0.17 2.94 4.66 -5.19 -0.02 2.92 16 12 N -0.76 -15.59 3.20 -62.90 -0.20 -15.79 16 13 C 0.55 14.72 7.21 -12.99 -0.09 14.62 16 14 O -0.58 -17.61 15.02 5.20 0.08 -17.53 16 15 C -0.54 -14.64 9.54 -35.63 -0.34 -14.98 16 16 H 0.07 1.66 7.85 -52.49 -0.41 1.25 16 17 C 0.09 2.40 5.50 -17.37 -0.10 2.30 16 18 N -0.77 -22.19 11.83 55.55 0.66 -21.53 16 19 Si 0.91 19.61 29.56 -169.99 -5.02 14.59 16 20 H -0.27 -5.69 7.11 56.52 0.40 -5.28 16 21 H -0.28 -5.94 7.11 56.52 0.40 -5.54 16 22 H -0.27 -5.65 7.11 56.52 0.40 -5.24 16 23 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 24 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 25 H 0.07 1.02 5.26 -51.93 -0.27 0.74 16 26 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 27 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 28 H 0.06 0.72 7.93 -51.93 -0.41 0.31 16 29 H 0.11 1.98 3.53 -51.93 -0.18 1.79 16 30 H 0.06 0.83 8.02 -51.93 -0.42 0.42 16 31 H 0.05 0.86 6.85 -51.93 -0.36 0.50 16 32 H 0.19 1.79 8.06 -52.48 -0.42 1.36 16 33 H 0.17 2.11 8.06 -52.49 -0.42 1.69 16 34 H 0.08 1.37 3.54 -51.93 -0.18 1.19 16 35 H 0.06 1.17 8.08 -51.93 -0.42 0.76 16 36 H 0.38 7.26 7.11 -40.82 -0.29 6.97 16 37 H 0.27 7.12 8.29 -40.82 -0.34 6.78 16 LS Contribution 300.04 15.07 4.52 4.52 Total: -1.00 -31.97 300.04 -6.96 -38.94 By element: Atomic # 1 Polarization: 13.38 SS G_CDS: -4.62 Total: 8.76 kcal Atomic # 6 Polarization: 5.24 SS G_CDS: -2.13 Total: 3.11 kcal Atomic # 7 Polarization: -52.59 SS G_CDS: 0.20 Total: -52.38 kcal Atomic # 8 Polarization: -17.61 SS G_CDS: 0.08 Total: -17.53 kcal Atomic # 14 Polarization: 19.61 SS G_CDS: -5.02 Total: 14.59 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -31.97 -6.96 -38.94 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000096787569.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.298 kcal (2) G-P(sol) polarization free energy of solvation -31.972 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.326 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.964 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.937 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.361 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds