Wall clock time and date at job start Mon Mar 30 2020 04:33:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 109.47353 * 2 1 4 4 C 1.52999 * 109.47491 * 239.99225 * 2 1 3 5 5 C 1.50705 * 109.47010 * 119.99421 * 2 1 3 6 6 N 1.32343 * 120.45052 * 250.80302 * 5 2 1 7 7 C 1.31781 * 120.82261 * 180.28577 * 6 5 2 8 8 N 1.31815 * 121.75102 * 359.70995 * 7 6 5 9 9 C 1.32316 * 120.81570 * 359.97438 * 8 7 6 10 10 C 1.38578 * 120.44801 * 70.52028 * 5 2 1 11 11 C 1.50703 * 120.79784 * 359.97438 * 10 5 2 12 12 N 1.46506 * 109.47132 * 85.29599 * 11 10 5 13 13 C 1.34773 * 120.00245 * 176.39374 * 12 11 10 14 14 O 1.21693 * 119.99976 * 0.02562 * 13 12 11 15 15 C 1.46375 * 120.00249 * 179.97438 * 13 12 11 16 16 H 1.07993 * 119.99822 * 0.02562 * 15 13 12 17 17 C 1.40050 * 119.99851 * 180.02562 * 15 13 12 18 18 N 1.30670 * 119.99950 * 359.97438 * 17 15 13 19 19 Si 1.86800 * 119.99837 * 180.02562 * 17 15 13 20 20 H 1.48504 * 109.47349 * 59.99276 * 19 17 15 21 21 H 1.48499 * 109.47233 * 179.97438 * 19 17 15 22 22 H 1.48502 * 109.46762 * 299.99799 * 19 17 15 23 23 H 1.08998 * 109.47222 * 293.75106 * 1 2 3 24 24 H 1.09003 * 109.46754 * 53.74970 * 1 2 3 25 25 H 1.08997 * 109.47256 * 173.75356 * 1 2 3 26 26 H 1.08996 * 109.47420 * 180.02562 * 3 2 1 27 27 H 1.09003 * 109.46743 * 299.99415 * 3 2 1 28 28 H 1.08992 * 109.47478 * 59.99475 * 3 2 1 29 29 H 1.08994 * 109.46904 * 317.52462 * 4 2 1 30 30 H 1.09006 * 109.46642 * 77.51678 * 4 2 1 31 31 H 1.08997 * 109.47578 * 197.51812 * 4 2 1 32 32 H 1.08003 * 119.12389 * 179.68367 * 7 6 5 33 33 H 1.08000 * 120.44577 * 180.02562 * 9 8 7 34 34 H 1.08993 * 109.47191 * 325.29962 * 11 10 5 35 35 H 1.09002 * 109.47482 * 205.29151 * 11 10 5 36 36 H 0.97004 * 119.99573 * 356.11596 * 12 11 10 37 37 H 0.97003 * 119.99765 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0401 -0.7214 -1.2491 5 6 2.0323 -0.7103 1.2306 6 7 2.6096 -0.0308 2.2086 7 6 3.0565 -0.6451 3.2854 8 7 2.9442 -1.9497 3.4366 9 6 2.3729 -2.6936 2.5033 10 6 1.8908 -2.0831 1.3560 11 6 1.2332 -2.8935 0.2688 12 7 2.2275 -3.2432 -0.7489 13 6 1.8820 -4.0318 -1.7857 14 8 0.7440 -4.4532 -1.8769 15 6 2.8752 -4.3807 -2.8027 16 1 3.8850 -4.0065 -2.7221 17 6 2.5159 -5.1998 -3.8804 18 7 1.2942 -5.6530 -3.9777 19 14 3.7836 -5.6456 -5.1780 20 1 4.9130 -6.3679 -4.5391 21 1 3.1565 -6.5168 -6.2040 22 1 4.2894 -4.4067 -5.8219 23 1 -0.3633 0.4139 0.9406 24 1 -0.3633 0.6077 -0.8288 25 1 -0.3633 -1.0215 -0.1118 26 1 3.1300 1.4425 -0.0005 27 1 1.6768 1.9563 -0.8901 28 1 1.6767 1.9564 0.8898 29 1 1.4466 -1.6200 -1.4175 30 1 1.9518 -0.0608 -2.1117 31 1 3.0851 -0.9972 -1.1082 32 1 3.5277 -0.0643 4.0645 33 1 2.2836 -3.7620 2.6335 34 1 0.4356 -2.3083 -0.1887 35 1 0.8157 -3.8049 0.6969 36 1 3.1335 -2.9037 -0.6785 37 1 1.0455 -6.2206 -4.7240 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000096787569.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:33:38 Heat of formation + Delta-G solvation = -3.944254 kcal Electronic energy + Delta-G solvation = -20309.469010 eV Core-core repulsion = 17279.510003 eV Total energy + Delta-G solvation = -3029.959007 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.137 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -42.48116 -39.64083 -38.15565 -35.80084 -34.55632 -33.89104 -32.59659 -29.14992 -28.31727 -28.05026 -26.85150 -25.55627 -23.67555 -21.71222 -20.97199 -19.37479 -18.68542 -17.74045 -17.45378 -16.55221 -16.17491 -15.82418 -15.70264 -15.42848 -14.94799 -14.72589 -14.55275 -14.33225 -14.11171 -13.29763 -13.25708 -13.12213 -12.93146 -12.70334 -12.59446 -12.48444 -12.30801 -12.07221 -12.02547 -11.77590 -11.49495 -11.48002 -10.89793 -10.57601 -10.18005 -9.78451 -9.34855 -8.26684 -6.82116 -0.18640 0.01077 1.41845 1.43899 1.55378 2.25662 2.49957 2.66458 2.93665 3.20093 3.27556 3.39926 3.61470 3.66542 3.82981 4.00470 4.03096 4.11960 4.47886 4.53931 4.63480 4.74325 4.78859 4.86585 4.93225 5.00760 5.06427 5.16404 5.25807 5.34304 5.39158 5.46194 5.57242 5.87023 5.95219 6.15888 6.26658 6.90021 7.05490 7.50970 8.50616 8.69131 Molecular weight = 263.14amu Principal moments of inertia in cm(-1) A = 0.025247 B = 0.005570 C = 0.005226 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1108.795770 B = 5025.385156 C = 5356.047160 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.021 4.021 3 C -0.117 4.117 4 C -0.154 4.154 5 C 0.201 3.799 6 N -0.523 5.523 7 C 0.289 3.711 8 N -0.536 5.536 9 C 0.161 3.839 10 C -0.200 4.200 11 C 0.174 3.826 12 N -0.741 5.741 13 C 0.547 3.453 14 O -0.627 6.627 15 C -0.571 4.571 16 H 0.083 0.917 17 C 0.034 3.966 18 N -0.818 5.818 19 Si 0.990 3.010 20 H -0.258 1.258 21 H -0.275 1.275 22 H -0.256 1.256 23 H 0.063 0.937 24 H 0.080 0.920 25 H 0.053 0.947 26 H 0.050 0.950 27 H 0.067 0.933 28 H 0.064 0.936 29 H 0.074 0.926 30 H 0.064 0.936 31 H 0.046 0.954 32 H 0.229 0.771 33 H 0.179 0.821 34 H 0.073 0.927 35 H 0.050 0.950 36 H 0.390 0.610 37 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.603 11.677 8.963 15.155 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.022 4.022 3 C -0.174 4.174 4 C -0.212 4.212 5 C 0.055 3.945 6 N -0.236 5.236 7 C 0.002 3.998 8 N -0.249 5.249 9 C -0.005 4.005 10 C -0.205 4.205 11 C 0.050 3.950 12 N -0.397 5.397 13 C 0.351 3.649 14 O -0.513 6.513 15 C -0.607 4.607 16 H 0.101 0.899 17 C -0.181 4.181 18 N -0.447 5.447 19 Si 0.810 3.190 20 H -0.182 1.182 21 H -0.200 1.200 22 H -0.180 1.180 23 H 0.082 0.918 24 H 0.099 0.901 25 H 0.072 0.928 26 H 0.070 0.930 27 H 0.086 0.914 28 H 0.084 0.916 29 H 0.093 0.907 30 H 0.083 0.917 31 H 0.066 0.934 32 H 0.245 0.755 33 H 0.196 0.804 34 H 0.091 0.909 35 H 0.069 0.931 36 H 0.224 0.776 37 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 3.074 11.807 9.577 15.511 hybrid contribution 0.333 -0.905 -1.042 1.420 sum 3.406 10.903 8.535 14.259 Atomic orbital electron populations 1.22016 0.92373 1.02437 1.03069 1.19649 0.96465 0.96481 0.89628 1.21625 1.00817 0.92655 1.02326 1.22560 1.01188 1.01527 0.95898 1.21765 0.88924 0.89884 0.93963 1.68345 1.11905 1.41165 1.02187 1.25695 0.91708 0.88286 0.94125 1.68511 1.16731 1.08560 1.31135 1.23424 0.88241 1.01348 0.87474 1.21496 1.04168 0.96042 0.98750 1.19918 0.91761 0.96701 0.86668 1.46114 1.13005 1.54956 1.25604 1.18409 0.88070 0.77277 0.81123 1.90577 1.23614 1.58544 1.78615 1.21334 0.97752 1.33274 1.08383 0.89932 1.26832 0.97530 0.93484 1.00293 1.70158 1.20299 1.25623 1.28664 0.85179 0.77924 0.79087 0.76801 1.18195 1.19969 1.17960 0.91810 0.90102 0.92797 0.93042 0.91358 0.91650 0.90709 0.91749 0.93445 0.75513 0.80420 0.90936 0.93123 0.77573 0.91602 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.54 8.26 71.98 0.59 -2.94 16 2 C -0.02 -0.56 0.75 -52.93 -0.04 -0.60 16 3 C -0.12 -2.61 7.71 71.98 0.55 -2.06 16 4 C -0.15 -4.78 6.86 71.98 0.49 -4.29 16 5 C 0.20 5.66 5.49 42.56 0.23 5.89 16 6 N -0.52 -13.54 9.18 -188.07 -1.73 -15.27 16 7 C 0.29 6.68 12.29 180.88 2.22 8.90 16 8 N -0.54 -14.00 10.44 -200.04 -2.09 -16.09 16 9 C 0.16 4.42 10.99 84.71 0.93 5.35 16 10 C -0.20 -5.98 5.11 -19.69 -0.10 -6.08 16 11 C 0.17 6.34 4.66 85.63 0.40 6.74 16 12 N -0.74 -31.15 3.20 -471.13 -1.51 -32.66 16 13 C 0.55 29.91 7.21 86.36 0.62 30.54 16 14 O -0.63 -39.87 15.02 -4.33 -0.06 -39.94 16 15 C -0.57 -31.14 9.54 24.83 0.24 -30.91 16 16 H 0.08 4.08 7.85 -2.91 -0.02 4.06 16 17 C 0.03 1.85 5.50 85.31 0.47 2.32 16 18 N -0.82 -48.66 11.83 21.84 0.26 -48.40 16 19 Si 0.99 40.07 29.56 68.60 2.03 42.09 16 20 H -0.26 -9.92 7.11 99.48 0.71 -9.21 16 21 H -0.27 -10.77 7.11 99.48 0.71 -10.07 16 22 H -0.26 -9.76 7.11 99.48 0.71 -9.05 16 23 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 24 H 0.08 1.79 8.14 -2.39 -0.02 1.77 16 25 H 0.05 1.55 5.26 -2.39 -0.01 1.53 16 26 H 0.05 1.19 8.14 -2.39 -0.02 1.17 16 27 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 28 H 0.06 1.40 7.93 -2.39 -0.02 1.38 16 29 H 0.07 2.84 3.53 -2.39 -0.01 2.84 16 30 H 0.06 1.86 8.02 -2.38 -0.02 1.84 16 31 H 0.05 1.49 6.85 -2.39 -0.02 1.48 16 32 H 0.23 3.35 8.06 -2.91 -0.02 3.33 16 33 H 0.18 4.37 8.06 -2.91 -0.02 4.35 16 34 H 0.07 2.74 3.54 -2.39 -0.01 2.73 16 35 H 0.05 1.96 8.08 -2.39 -0.02 1.94 16 36 H 0.39 14.97 7.11 -92.71 -0.66 14.32 16 37 H 0.27 14.86 8.29 -92.71 -0.77 14.09 16 Total: -1.00 -70.12 300.04 3.96 -66.17 By element: Atomic # 1 Polarization: 30.79 SS G_CDS: 0.44 Total: 31.24 kcal Atomic # 6 Polarization: 6.25 SS G_CDS: 6.62 Total: 12.87 kcal Atomic # 7 Polarization: -107.36 SS G_CDS: -5.07 Total: -112.42 kcal Atomic # 8 Polarization: -39.87 SS G_CDS: -0.06 Total: -39.94 kcal Atomic # 14 Polarization: 40.07 SS G_CDS: 2.03 Total: 42.09 kcal Total: -70.12 3.96 -66.17 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000096787569.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.224 kcal (2) G-P(sol) polarization free energy of solvation -70.124 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.900 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.956 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.168 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.944 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds