Wall clock time and date at job start Mon Mar 30 2020 04:18:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38388 * 120.00538 * 2 1 4 4 N 1.32121 * 119.99822 * 180.02562 * 3 2 1 5 5 C 1.32155 * 120.00178 * 359.97438 * 4 3 2 6 6 C 1.38343 * 120.00123 * 0.02562 * 5 4 3 7 7 C 1.50696 * 119.99435 * 179.97438 * 6 5 4 8 8 C 1.52998 * 109.46969 * 85.00447 * 7 6 5 9 9 N 1.46506 * 109.47237 * 179.97438 * 8 7 6 10 10 C 1.34773 * 119.99969 * 179.72043 * 9 8 7 11 11 O 1.21281 * 120.00220 * 0.02562 * 10 9 8 12 12 C 1.50706 * 120.00080 * 180.02562 * 10 9 8 13 13 C 1.52992 * 109.47274 * 180.02562 * 12 10 9 14 14 C 1.50696 * 109.47278 * 180.02562 * 13 12 10 15 15 H 1.08004 * 119.99953 * 359.97438 * 14 13 12 16 16 C 1.37871 * 120.00439 * 179.97438 * 14 13 12 17 17 N 1.31514 * 120.00481 * 179.97438 * 16 14 13 18 18 Si 1.86801 * 119.99745 * 359.97438 * 16 14 13 19 19 H 1.48504 * 109.47209 * 90.00365 * 18 16 14 20 20 H 1.48501 * 109.47358 * 209.99857 * 18 16 14 21 21 H 1.48501 * 109.47275 * 330.00116 * 18 16 14 22 22 N 1.32128 * 119.99882 * 180.24982 * 2 1 3 23 23 H 1.09007 * 109.46740 * 90.00219 * 1 2 3 24 24 H 1.09001 * 109.47541 * 209.99780 * 1 2 3 25 25 H 1.08994 * 109.46934 * 330.00664 * 1 2 3 26 26 H 1.08002 * 119.99395 * 0.02562 * 3 2 1 27 27 H 1.08000 * 119.99468 * 180.02562 * 5 4 3 28 28 H 1.09000 * 109.47664 * 325.00376 * 7 6 5 29 29 H 1.09002 * 109.46824 * 204.99847 * 7 6 5 30 30 H 1.09001 * 109.47671 * 59.99812 * 8 7 6 31 31 H 1.08998 * 109.47454 * 299.99809 * 8 7 6 32 32 H 0.97005 * 119.99811 * 0.02562 * 9 8 7 33 33 H 1.09004 * 109.46762 * 300.00389 * 12 10 9 34 34 H 1.08998 * 109.46924 * 59.99727 * 12 10 9 35 35 H 1.09004 * 109.47116 * 299.99649 * 13 12 10 36 36 H 1.08993 * 109.47352 * 59.99893 * 13 12 10 37 37 H 0.97000 * 120.00722 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1990 1.1984 0.0000 4 7 3.5202 1.1982 -0.0005 5 6 4.1809 0.0537 -0.0005 6 6 3.4891 -1.1443 -0.0005 7 6 4.2426 -2.4494 -0.0011 8 6 4.6069 -2.8285 1.4357 9 7 5.3390 -4.0976 1.4352 10 6 5.7692 -4.6278 2.5972 11 8 5.5499 -4.0546 3.6433 12 6 6.5227 -5.9329 2.5967 13 6 6.8924 -6.3089 4.0329 14 6 7.6464 -7.6137 4.0324 15 1 7.8420 -8.1240 3.1008 16 6 8.0867 -8.1561 5.2210 17 7 8.7443 -9.2950 5.2206 18 14 7.7490 -7.2731 6.8322 19 1 6.4523 -7.7364 7.3883 20 1 8.8367 -7.5722 7.7980 21 1 7.6896 -5.8090 6.5914 22 7 2.1676 -1.1443 -0.0050 23 1 -0.3633 0.0000 -1.0277 24 1 -0.3634 -0.8900 0.5138 25 1 -0.3633 0.8900 0.5137 26 1 1.6590 2.1337 0.0004 27 1 5.2609 0.0537 -0.0005 28 1 5.1531 -2.3431 -0.5908 29 1 3.6175 -3.2296 -0.4353 30 1 3.6965 -2.9349 2.0255 31 1 5.2320 -2.0483 1.8700 32 1 5.5179 -4.5540 0.5982 33 1 5.8958 -6.7142 2.1669 34 1 7.4307 -5.8280 2.0030 35 1 7.5192 -5.5277 4.4632 36 1 5.9842 -6.4140 4.6263 37 1 9.0543 -9.6764 6.0568 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000598311436.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:18:06 Heat of formation + Delta-G solvation = -10.970047 kcal Electronic energy + Delta-G solvation = -18360.872196 eV Core-core repulsion = 15330.608527 eV Total energy + Delta-G solvation = -3030.263668 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.137 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.54252 -39.28375 -35.93652 -34.84085 -33.60904 -33.46861 -31.37985 -30.24704 -28.17729 -26.35468 -24.60338 -23.54808 -21.98587 -21.19854 -19.67389 -18.11874 -17.28082 -17.18087 -16.21127 -15.96476 -15.50100 -15.26339 -15.03571 -14.23536 -14.08550 -13.86484 -13.41414 -13.17638 -12.95513 -12.73040 -12.55665 -12.53444 -12.37154 -11.91368 -11.58679 -11.40960 -11.27041 -10.94708 -10.16012 -10.03966 -9.77964 -9.48456 -9.44352 -9.22662 -9.15339 -8.92277 -8.49882 -6.02266 -4.01001 0.35998 0.76339 3.11717 3.15928 3.35334 3.38851 3.45384 3.56500 3.67219 3.90081 4.06253 4.36018 4.51843 4.57376 4.69603 4.82981 4.87322 5.02212 5.10123 5.24229 5.28124 5.33280 5.42864 5.53688 5.71561 5.83606 6.00420 6.08621 6.10622 6.55983 6.70226 6.92202 7.37512 7.42054 7.44427 7.73711 7.80360 8.50567 8.64535 9.00794 9.60880 11.10536 Molecular weight = 263.14amu Principal moments of inertia in cm(-1) A = 0.042744 B = 0.002882 C = 0.002848 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 654.910867 B = 9712.172335 C = 9829.577770 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C 0.083 3.917 3 C 0.043 3.957 4 N -0.433 5.433 5 C 0.048 3.952 6 C 0.094 3.906 7 C -0.080 4.080 8 C 0.127 3.873 9 N -0.742 5.742 10 C 0.510 3.490 11 O -0.540 6.540 12 C -0.122 4.122 13 C 0.001 3.999 14 C -0.525 4.525 15 H 0.073 0.927 16 C 0.069 3.931 17 N -0.904 5.904 18 Si 0.877 3.123 19 H -0.277 1.277 20 H -0.288 1.288 21 H -0.261 1.261 22 N -0.436 5.436 23 H 0.082 0.918 24 H 0.082 0.918 25 H 0.080 0.920 26 H 0.169 0.831 27 H 0.171 0.829 28 H 0.094 0.906 29 H 0.094 0.906 30 H 0.067 0.933 31 H 0.066 0.934 32 H 0.400 0.600 33 H 0.086 0.914 34 H 0.087 0.913 35 H 0.023 0.977 36 H 0.019 0.981 37 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.280 19.768 -15.213 28.742 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.058 4.058 3 C -0.117 4.117 4 N -0.146 5.146 5 C -0.112 4.112 6 C -0.047 4.047 7 C -0.119 4.119 8 C 0.003 3.997 9 N -0.396 5.396 10 C 0.299 3.701 11 O -0.416 6.416 12 C -0.161 4.161 13 C -0.037 4.037 14 C -0.563 4.563 15 H 0.091 0.909 16 C -0.133 4.133 17 N -0.543 5.543 18 Si 0.704 3.296 19 H -0.202 1.202 20 H -0.215 1.215 21 H -0.185 1.185 22 N -0.152 5.152 23 H 0.101 0.899 24 H 0.101 0.899 25 H 0.099 0.901 26 H 0.186 0.814 27 H 0.188 0.812 28 H 0.112 0.888 29 H 0.113 0.887 30 H 0.085 0.915 31 H 0.084 0.916 32 H 0.234 0.766 33 H 0.105 0.895 34 H 0.105 0.895 35 H 0.042 0.958 36 H 0.037 0.963 37 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -14.344 20.079 -14.318 28.529 hybrid contribution -0.045 0.183 0.431 0.471 sum -14.389 20.262 -13.887 28.468 Atomic orbital electron populations 1.20711 0.87575 1.04175 1.03539 1.22373 0.98569 0.89439 0.95370 1.23624 0.90910 0.99257 0.97953 1.68450 1.08839 1.29559 1.07739 1.23630 1.02013 0.88163 0.97378 1.22030 0.90497 0.96580 0.95557 1.20711 0.99913 0.93173 0.98067 1.21116 0.97020 0.86872 0.94729 1.46117 1.59344 1.24143 1.10035 1.21566 0.78313 0.87630 0.82623 1.90661 1.56507 1.62796 1.31621 1.21668 0.99418 0.91771 1.03286 1.19372 0.96960 0.97081 0.90300 1.21114 1.35276 1.04822 0.95050 0.90912 1.24973 0.94449 0.94643 0.99201 1.69909 1.38486 1.18693 1.27187 0.86796 0.77933 0.81378 0.83445 1.20248 1.21452 1.18533 1.68153 1.08284 1.29507 1.09241 0.89901 0.89947 0.90093 0.81419 0.81203 0.88763 0.88717 0.91487 0.91576 0.76580 0.89547 0.89510 0.95826 0.96284 0.92720 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.54 10.19 36.00 0.37 -0.17 16 2 C 0.08 0.71 6.79 -82.41 -0.56 0.15 16 3 C 0.04 0.35 10.88 -17.37 -0.19 0.16 16 4 N -0.43 -4.36 10.50 -13.06 -0.14 -4.50 16 5 C 0.05 0.44 10.90 -17.37 -0.19 0.25 16 6 C 0.09 0.91 6.04 -82.42 -0.50 0.41 16 7 C -0.08 -0.64 5.62 -27.89 -0.16 -0.80 16 8 C 0.13 1.46 5.66 -4.04 -0.02 1.44 16 9 N -0.74 -9.39 5.56 -60.29 -0.33 -9.73 16 10 C 0.51 9.19 7.83 -10.98 -0.09 9.11 16 11 O -0.54 -12.10 15.98 5.56 0.09 -12.01 16 12 C -0.12 -2.32 5.64 -27.88 -0.16 -2.48 16 13 C 0.00 0.02 3.33 -27.89 -0.09 -0.07 16 14 C -0.52 -15.04 9.66 -34.44 -0.33 -15.38 16 15 H 0.07 2.17 7.99 -52.48 -0.42 1.75 16 16 C 0.07 2.04 5.47 -17.82 -0.10 1.94 16 17 N -0.90 -28.10 13.96 55.43 0.77 -27.33 16 18 Si 0.88 22.73 27.47 -169.99 -4.67 18.06 16 19 H -0.28 -7.07 7.11 56.52 0.40 -6.67 16 20 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 21 H -0.26 -6.74 6.54 56.52 0.37 -6.37 16 22 N -0.44 -4.58 10.35 -5.56 -0.06 -4.64 16 23 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 24 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 25 H 0.08 0.26 8.09 -51.93 -0.42 -0.16 16 26 H 0.17 0.83 8.06 -52.49 -0.42 0.41 16 27 H 0.17 1.16 8.06 -52.49 -0.42 0.73 16 28 H 0.09 0.54 8.12 -51.93 -0.42 0.12 16 29 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 30 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 31 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 32 H 0.40 3.71 8.47 -40.82 -0.35 3.36 16 33 H 0.09 1.52 8.14 -51.93 -0.42 1.10 16 34 H 0.09 1.51 8.14 -51.93 -0.42 1.09 16 35 H 0.02 0.62 7.15 -51.93 -0.37 0.24 16 36 H 0.02 0.49 7.53 -51.93 -0.39 0.10 16 37 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16 LS Contribution 321.33 15.07 4.84 4.84 Total: -1.00 -36.59 321.33 -6.85 -43.44 By element: Atomic # 1 Polarization: 2.64 SS G_CDS: -5.34 Total: -2.70 kcal Atomic # 6 Polarization: -3.43 SS G_CDS: -2.01 Total: -5.44 kcal Atomic # 7 Polarization: -46.44 SS G_CDS: 0.24 Total: -46.19 kcal Atomic # 8 Polarization: -12.10 SS G_CDS: 0.09 Total: -12.01 kcal Atomic # 14 Polarization: 22.73 SS G_CDS: -4.67 Total: 18.06 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -36.59 -6.85 -43.44 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598311436.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.466 kcal (2) G-P(sol) polarization free energy of solvation -36.587 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.121 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.849 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.436 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.970 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds