Wall clock time and date at job start Mon Mar 30 2020 04:18:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38388 * 120.00538 * 2 1 4 4 N 1.32121 * 119.99822 * 180.02562 * 3 2 1 5 5 C 1.32155 * 120.00178 * 359.97438 * 4 3 2 6 6 C 1.38343 * 120.00123 * 0.02562 * 5 4 3 7 7 C 1.50696 * 119.99435 * 179.97438 * 6 5 4 8 8 C 1.52998 * 109.46969 * 85.00447 * 7 6 5 9 9 N 1.46506 * 109.47237 * 179.97438 * 8 7 6 10 10 C 1.34773 * 119.99969 * 179.72043 * 9 8 7 11 11 O 1.21281 * 120.00220 * 0.02562 * 10 9 8 12 12 C 1.50706 * 120.00080 * 180.02562 * 10 9 8 13 13 C 1.52992 * 109.47274 * 180.02562 * 12 10 9 14 14 C 1.50696 * 109.47278 * 180.02562 * 13 12 10 15 15 H 1.08004 * 119.99953 * 359.97438 * 14 13 12 16 16 C 1.37871 * 120.00439 * 179.97438 * 14 13 12 17 17 N 1.31514 * 120.00481 * 179.97438 * 16 14 13 18 18 Si 1.86801 * 119.99745 * 359.97438 * 16 14 13 19 19 H 1.48504 * 109.47209 * 90.00365 * 18 16 14 20 20 H 1.48501 * 109.47358 * 209.99857 * 18 16 14 21 21 H 1.48501 * 109.47275 * 330.00116 * 18 16 14 22 22 N 1.32128 * 119.99882 * 180.24982 * 2 1 3 23 23 H 1.09007 * 109.46740 * 90.00219 * 1 2 3 24 24 H 1.09001 * 109.47541 * 209.99780 * 1 2 3 25 25 H 1.08994 * 109.46934 * 330.00664 * 1 2 3 26 26 H 1.08002 * 119.99395 * 0.02562 * 3 2 1 27 27 H 1.08000 * 119.99468 * 180.02562 * 5 4 3 28 28 H 1.09000 * 109.47664 * 325.00376 * 7 6 5 29 29 H 1.09002 * 109.46824 * 204.99847 * 7 6 5 30 30 H 1.09001 * 109.47671 * 59.99812 * 8 7 6 31 31 H 1.08998 * 109.47454 * 299.99809 * 8 7 6 32 32 H 0.97005 * 119.99811 * 0.02562 * 9 8 7 33 33 H 1.09004 * 109.46762 * 300.00389 * 12 10 9 34 34 H 1.08998 * 109.46924 * 59.99727 * 12 10 9 35 35 H 1.09004 * 109.47116 * 299.99649 * 13 12 10 36 36 H 1.08993 * 109.47352 * 59.99893 * 13 12 10 37 37 H 0.97000 * 120.00722 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1990 1.1984 0.0000 4 7 3.5202 1.1982 -0.0005 5 6 4.1809 0.0537 -0.0005 6 6 3.4891 -1.1443 -0.0005 7 6 4.2426 -2.4494 -0.0011 8 6 4.6069 -2.8285 1.4357 9 7 5.3390 -4.0976 1.4352 10 6 5.7692 -4.6278 2.5972 11 8 5.5499 -4.0546 3.6433 12 6 6.5227 -5.9329 2.5967 13 6 6.8924 -6.3089 4.0329 14 6 7.6464 -7.6137 4.0324 15 1 7.8420 -8.1240 3.1008 16 6 8.0867 -8.1561 5.2210 17 7 8.7443 -9.2950 5.2206 18 14 7.7490 -7.2731 6.8322 19 1 6.4523 -7.7364 7.3883 20 1 8.8367 -7.5722 7.7980 21 1 7.6896 -5.8090 6.5914 22 7 2.1676 -1.1443 -0.0050 23 1 -0.3633 0.0000 -1.0277 24 1 -0.3634 -0.8900 0.5138 25 1 -0.3633 0.8900 0.5137 26 1 1.6590 2.1337 0.0004 27 1 5.2609 0.0537 -0.0005 28 1 5.1531 -2.3431 -0.5908 29 1 3.6175 -3.2296 -0.4353 30 1 3.6965 -2.9349 2.0255 31 1 5.2320 -2.0483 1.8700 32 1 5.5179 -4.5540 0.5982 33 1 5.8958 -6.7142 2.1669 34 1 7.4307 -5.8280 2.0030 35 1 7.5192 -5.5277 4.4632 36 1 5.9842 -6.4140 4.6263 37 1 9.0543 -9.6764 6.0568 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000598311436.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:18:05 Heat of formation + Delta-G solvation = -38.495440 kcal Electronic energy + Delta-G solvation = -18362.065786 eV Core-core repulsion = 15330.608527 eV Total energy + Delta-G solvation = -3031.457259 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.137 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -42.18270 -40.68290 -36.93112 -35.54364 -35.48293 -34.50124 -33.30270 -31.15871 -28.87415 -27.96992 -25.63420 -24.25143 -23.10097 -22.59015 -21.16044 -19.20611 -18.77859 -17.84622 -17.58424 -17.18248 -16.76707 -16.26487 -15.99074 -15.78819 -15.42863 -14.85216 -14.57619 -14.41806 -14.17301 -13.80829 -13.46191 -13.38949 -13.22585 -13.17414 -12.91412 -12.61212 -12.41539 -12.10698 -11.96391 -11.94588 -11.75887 -11.39010 -10.82591 -10.77769 -10.12114 -10.08063 -10.03127 -8.31097 -6.33683 -0.26820 0.09749 1.33129 1.35164 1.50219 1.69122 2.16894 2.35208 2.64385 3.01532 3.04664 3.33129 3.44809 3.75495 3.91514 3.95132 4.08771 4.18618 4.27059 4.42435 4.43890 4.52340 4.58884 4.73822 4.78116 4.92973 4.98709 5.05573 5.11979 5.33400 5.43574 5.46070 5.47066 5.62142 6.24229 6.29151 6.60074 6.73040 6.78203 7.31561 7.32267 8.84503 Molecular weight = 263.14amu Principal moments of inertia in cm(-1) A = 0.042744 B = 0.002882 C = 0.002848 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 654.910867 B = 9712.172335 C = 9829.577770 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 C 0.073 3.927 3 C 0.041 3.959 4 N -0.457 5.457 5 C 0.039 3.961 6 C 0.081 3.919 7 C -0.065 4.065 8 C 0.131 3.869 9 N -0.715 5.715 10 C 0.514 3.486 11 O -0.590 6.590 12 C -0.116 4.116 13 C 0.003 3.997 14 C -0.528 4.528 15 H 0.052 0.948 16 C 0.013 3.987 17 N -0.943 5.943 18 Si 0.937 3.063 19 H -0.270 1.270 20 H -0.278 1.278 21 H -0.262 1.262 22 N -0.463 5.463 23 H 0.096 0.904 24 H 0.072 0.928 25 H 0.104 0.896 26 H 0.198 0.802 27 H 0.189 0.811 28 H 0.124 0.876 29 H 0.100 0.900 30 H 0.044 0.956 31 H 0.061 0.939 32 H 0.421 0.579 33 H 0.104 0.896 34 H 0.107 0.893 35 H 0.009 0.991 36 H 0.006 0.994 37 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.204 21.282 -16.307 30.823 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.068 4.068 3 C -0.119 4.119 4 N -0.171 5.171 5 C -0.120 4.120 6 C -0.060 4.060 7 C -0.104 4.104 8 C 0.007 3.993 9 N -0.369 5.369 10 C 0.302 3.698 11 O -0.470 6.470 12 C -0.155 4.155 13 C -0.035 4.035 14 C -0.566 4.566 15 H 0.071 0.929 16 C -0.185 4.185 17 N -0.584 5.584 18 Si 0.762 3.238 19 H -0.195 1.195 20 H -0.203 1.203 21 H -0.187 1.187 22 N -0.180 5.180 23 H 0.114 0.886 24 H 0.091 0.909 25 H 0.122 0.878 26 H 0.215 0.785 27 H 0.206 0.794 28 H 0.142 0.858 29 H 0.118 0.882 30 H 0.062 0.938 31 H 0.079 0.921 32 H 0.258 0.742 33 H 0.122 0.878 34 H 0.125 0.875 35 H 0.028 0.972 36 H 0.025 0.975 37 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -15.272 21.588 -15.480 30.642 hybrid contribution 0.194 -0.266 0.674 0.750 sum -15.078 21.322 -14.806 30.020 Atomic orbital electron populations 1.20807 0.85470 1.04854 1.04564 1.22903 1.00041 0.89140 0.94684 1.24139 0.90569 1.00440 0.96733 1.68480 1.09871 1.30106 1.08626 1.23954 1.02994 0.87934 0.97089 1.22203 0.90519 0.97164 0.96118 1.20630 1.01186 0.92757 0.95820 1.21122 0.95599 0.85739 0.96878 1.45800 1.57523 1.24236 1.09370 1.21250 0.78194 0.87117 0.83237 1.90648 1.58712 1.63991 1.33659 1.21498 1.01035 0.93185 0.99824 1.19236 0.95513 0.94729 0.94026 1.21441 1.34935 1.05951 0.94237 0.92943 1.25795 0.94531 0.95387 1.02742 1.70018 1.39899 1.20209 1.28288 0.85844 0.78260 0.79986 0.79703 1.19488 1.20346 1.18650 1.68168 1.08952 1.30743 1.10096 0.88572 0.90899 0.87751 0.78486 0.79380 0.85785 0.88198 0.93760 0.92091 0.74166 0.87763 0.87496 0.97216 0.97517 0.92391 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.87 10.19 71.24 0.73 -0.14 16 2 C 0.07 1.15 6.79 42.55 0.29 1.44 16 3 C 0.04 0.61 10.88 84.69 0.92 1.53 16 4 N -0.46 -8.62 10.50 -195.23 -2.05 -10.67 16 5 C 0.04 0.67 10.90 84.67 0.92 1.59 16 6 C 0.08 1.44 6.04 42.53 0.26 1.69 16 7 C -0.07 -0.91 5.62 29.85 0.17 -0.74 16 8 C 0.13 2.82 5.66 86.38 0.49 3.31 16 9 N -0.72 -16.55 5.56 -463.05 -2.57 -19.12 16 10 C 0.51 17.85 7.83 87.66 0.69 18.53 16 11 O -0.59 -26.30 15.98 -3.03 -0.05 -26.35 16 12 C -0.12 -4.26 5.64 29.85 0.17 -4.09 16 13 C 0.00 0.15 3.33 29.84 0.10 0.25 16 14 C -0.53 -30.40 9.66 25.60 0.25 -30.15 16 15 H 0.05 3.16 7.99 -2.91 -0.02 3.13 16 16 C 0.01 0.78 5.47 84.65 0.46 1.24 16 17 N -0.94 -59.18 13.96 21.45 0.30 -58.88 16 18 Si 0.94 47.10 27.47 68.60 1.88 48.98 16 19 H -0.27 -13.15 7.11 99.48 0.71 -12.44 16 20 H -0.28 -13.39 7.11 99.48 0.71 -12.68 16 21 H -0.26 -13.13 6.54 99.48 0.65 -12.48 16 22 N -0.46 -9.26 10.35 -171.52 -1.77 -11.04 16 23 H 0.10 0.59 8.14 -2.38 -0.02 0.57 16 24 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 25 H 0.10 0.40 8.09 -2.39 -0.02 0.38 16 26 H 0.20 1.46 8.06 -2.91 -0.02 1.43 16 27 H 0.19 2.23 8.06 -2.91 -0.02 2.20 16 28 H 0.12 0.99 8.12 -2.39 -0.02 0.97 16 29 H 0.10 1.32 8.14 -2.39 -0.02 1.30 16 30 H 0.04 1.18 8.14 -2.39 -0.02 1.16 16 31 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 32 H 0.42 6.41 8.47 -92.70 -0.79 5.63 16 33 H 0.10 3.46 8.14 -2.39 -0.02 3.44 16 34 H 0.11 3.49 8.14 -2.39 -0.02 3.47 16 35 H 0.01 0.50 7.15 -2.39 -0.02 0.48 16 36 H 0.01 0.33 7.53 -2.39 -0.02 0.32 16 37 H 0.27 15.67 8.31 -92.71 -0.77 14.90 16 Total: -1.00 -80.07 321.33 1.40 -78.66 By element: Atomic # 1 Polarization: 3.72 SS G_CDS: 0.23 Total: 3.95 kcal Atomic # 6 Polarization: -10.98 SS G_CDS: 5.44 Total: -5.54 kcal Atomic # 7 Polarization: -93.61 SS G_CDS: -6.10 Total: -99.71 kcal Atomic # 8 Polarization: -26.30 SS G_CDS: -0.05 Total: -26.35 kcal Atomic # 14 Polarization: 47.10 SS G_CDS: 1.88 Total: 48.98 kcal Total: -80.07 1.40 -78.66 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598311436.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.167 kcal (2) G-P(sol) polarization free energy of solvation -80.066 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.899 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.404 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.663 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.495 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds