Wall clock time and date at job start Mon Mar 30 2020 05:28:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52993 * 109.47079 * 2 1 4 4 H 1.08998 * 109.47249 * 54.99810 * 3 2 1 5 5 N 1.46898 * 109.47492 * 294.99902 * 3 2 1 6 6 C 1.53001 * 109.47056 * 175.00076 * 3 2 1 7 7 H 1.09001 * 109.47404 * 59.07949 * 6 3 2 8 8 C 1.50701 * 109.47166 * 299.07915 * 6 3 2 9 9 C 1.38655 * 120.78523 * 273.22992 * 8 6 3 10 10 C 1.38203 * 119.15794 * 179.75605 * 9 8 6 11 11 N 1.31874 * 120.76310 * 0.52798 * 10 9 8 12 12 C 1.31866 * 121.72823 * 359.74464 * 11 10 9 13 13 C 1.38203 * 120.76298 * 359.97438 * 12 11 10 14 14 N 1.46909 * 109.47060 * 179.07690 * 6 3 2 15 15 C 1.46895 * 111.00148 * 268.64116 * 14 6 3 16 16 C 1.46896 * 110.99699 * 32.59855 * 14 6 3 17 17 C 1.50709 * 109.46854 * 161.10303 * 16 14 6 18 18 H 1.07997 * 119.99828 * 359.97438 * 17 16 14 19 19 C 1.37876 * 120.00006 * 179.97438 * 17 16 14 20 20 N 1.31514 * 119.99680 * 0.02562 * 19 17 16 21 21 Si 1.86794 * 119.99793 * 179.97438 * 19 17 16 22 22 H 1.48506 * 109.47096 * 90.00411 * 21 19 17 23 23 H 1.48504 * 109.47064 * 209.99819 * 21 19 17 24 24 H 1.48498 * 109.47593 * 330.00041 * 21 19 17 25 25 H 1.08997 * 109.46993 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.47347 * 299.99989 * 1 2 3 27 27 H 1.09008 * 109.47103 * 60.00100 * 1 2 3 28 28 H 1.09002 * 109.46833 * 240.00574 * 2 1 3 29 29 H 1.08998 * 109.47227 * 120.00489 * 2 1 3 30 30 H 1.00899 * 111.00498 * 171.49985 * 5 3 2 31 31 H 1.00899 * 111.00376 * 295.46128 * 5 3 2 32 32 H 1.07996 * 120.42391 * 0.02562 * 9 8 6 33 33 H 1.08001 * 119.62019 * 180.25519 * 10 9 8 34 34 H 1.07996 * 119.62171 * 179.97438 * 12 11 10 35 35 H 1.08003 * 120.42160 * 180.02562 * 13 12 11 36 36 H 1.09006 * 109.47038 * 53.53529 * 15 14 6 37 37 H 1.08996 * 109.47357 * 173.53068 * 15 14 6 38 38 H 1.08995 * 109.47270 * 293.53776 * 15 14 6 39 39 H 1.08997 * 109.47147 * 281.09701 * 16 14 6 40 40 H 1.09001 * 109.47539 * 41.10436 * 16 14 6 41 41 H 0.97003 * 119.99546 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6053 1.9815 0.8418 5 7 1.6514 2.0993 -1.2552 6 6 3.5648 1.4443 0.1257 7 1 3.9988 0.8912 -0.7074 8 6 3.9626 0.7907 1.4240 9 6 4.0390 1.5282 2.5956 10 6 4.4024 0.8936 3.7683 11 7 4.6845 -0.3945 3.7787 12 6 4.6277 -1.1258 2.6829 13 6 4.2664 -0.5612 1.4743 14 7 4.0563 2.8285 0.1035 15 6 4.3756 3.2519 -1.2664 16 6 3.0871 3.7412 0.7243 17 6 3.7788 5.0248 1.1056 18 1 4.8330 5.1497 0.9071 19 6 3.0658 6.0395 1.7080 20 7 1.7821 5.8871 1.9502 21 14 3.9233 7.6301 2.1813 22 1 3.8505 8.5877 1.0485 23 1 3.2550 8.2179 3.3700 24 1 5.3459 7.3493 2.5015 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8901 28 1 1.8933 -0.5138 -0.8901 29 1 1.8934 -0.5139 0.8899 30 1 1.8533 3.0874 -1.2239 31 1 2.1014 1.6631 -2.0460 32 1 3.8132 2.5843 2.5928 33 1 4.4602 1.4601 4.6860 34 1 4.8662 -2.1780 2.7303 35 1 4.2213 -1.1653 0.5802 36 1 3.5125 3.0810 -1.9100 37 1 4.6269 4.3125 -1.2697 38 1 5.2241 2.6763 -1.6362 39 1 2.2862 3.9565 0.0170 40 1 2.6687 3.2751 1.6163 41 1 1.2804 6.6012 2.3736 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000043353144.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:28:54 Heat of formation + Delta-G solvation = 49.287695 kcal Electronic energy + Delta-G solvation = -20974.503214 eV Core-core repulsion = 18082.685612 eV Total energy + Delta-G solvation = -2891.817602 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.169 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.22946 -38.34215 -34.57568 -32.80436 -32.31534 -30.77669 -30.52722 -27.90918 -27.42484 -24.61678 -23.64904 -22.85043 -21.91386 -20.86889 -19.37312 -16.89752 -16.43364 -15.80337 -15.58257 -15.25310 -15.06170 -14.48650 -14.29620 -13.86684 -13.48782 -13.39854 -13.12405 -13.04737 -12.60622 -12.14051 -11.97840 -11.70282 -11.42812 -11.17710 -11.02737 -10.97084 -10.74521 -10.66269 -10.51820 -10.37889 -9.86180 -9.41069 -9.29633 -9.00094 -8.72890 -8.61180 -8.45368 -7.17107 -6.12180 -4.15021 1.54211 1.70561 3.25800 3.33412 3.37125 4.20350 4.34086 4.63239 4.80395 4.82383 5.12585 5.14203 5.22936 5.23761 5.43691 5.47770 5.51413 5.62287 5.70358 5.81056 5.94056 5.98176 6.04687 6.09187 6.13091 6.22530 6.32415 6.44524 6.51505 6.53136 6.59924 6.80101 7.05497 7.08118 7.21140 7.48614 7.69709 7.76065 7.92650 8.02973 8.34541 8.37577 8.93305 9.50406 10.96999 Molecular weight = 263.17amu Principal moments of inertia in cm(-1) A = 0.016268 B = 0.007450 C = 0.006085 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1720.770533 B = 3757.715562 C = 4600.531154 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.114 4.114 3 C 0.071 3.929 4 H 0.095 0.905 5 N -0.842 5.842 6 C 0.084 3.916 7 H 0.074 0.926 8 C -0.012 4.012 9 C -0.144 4.144 10 C 0.089 3.911 11 N -0.496 5.496 12 C 0.083 3.917 13 C -0.176 4.176 14 N -0.534 5.534 15 C 0.027 3.973 16 C 0.182 3.818 17 C -0.513 4.513 18 H 0.063 0.937 19 C 0.059 3.941 20 N -0.893 5.893 21 Si 0.896 3.104 22 H -0.281 1.281 23 H -0.286 1.286 24 H -0.273 1.273 25 H 0.041 0.959 26 H 0.049 0.951 27 H 0.064 0.936 28 H 0.054 0.946 29 H 0.064 0.936 30 H 0.354 0.646 31 H 0.328 0.672 32 H 0.161 0.839 33 H 0.151 0.849 34 H 0.146 0.854 35 H 0.124 0.876 36 H 0.016 0.984 37 H 0.078 0.922 38 H 0.047 0.953 39 H 0.004 0.996 40 H 0.038 0.962 41 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.546 -11.065 -3.958 11.853 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.152 4.152 3 C -0.042 4.042 4 H 0.113 0.887 5 N -0.376 5.376 6 C -0.027 4.027 7 H 0.092 0.908 8 C -0.022 4.022 9 C -0.163 4.163 10 C -0.067 4.067 11 N -0.206 5.206 12 C -0.074 4.074 13 C -0.196 4.196 14 N -0.257 5.257 15 C -0.122 4.122 16 C 0.057 3.943 17 C -0.552 4.552 18 H 0.081 0.919 19 C -0.143 4.143 20 N -0.532 5.532 21 Si 0.724 3.276 22 H -0.208 1.208 23 H -0.212 1.212 24 H -0.198 1.198 25 H 0.060 0.940 26 H 0.069 0.931 27 H 0.084 0.916 28 H 0.072 0.928 29 H 0.082 0.918 30 H 0.174 0.826 31 H 0.140 0.860 32 H 0.179 0.821 33 H 0.168 0.832 34 H 0.163 0.837 35 H 0.142 0.858 36 H 0.035 0.965 37 H 0.097 0.903 38 H 0.066 0.934 39 H 0.021 0.979 40 H 0.056 0.944 41 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 1.309 -11.517 -2.650 11.890 hybrid contribution 0.487 1.531 -1.092 1.943 sum 1.796 -9.986 -3.742 10.814 Atomic orbital electron populations 1.21634 0.95451 1.00174 1.02615 1.21578 0.96677 0.95743 1.01212 1.22134 0.92242 0.95543 0.94259 0.88677 1.59130 1.66031 1.08992 1.03483 1.21446 0.95235 0.92167 0.93851 0.90780 1.20173 0.93730 0.92719 0.95554 1.22666 0.97928 1.03467 0.92289 1.22764 0.95400 0.90389 0.98190 1.67589 1.14635 1.07559 1.30827 1.22510 0.97161 0.99490 0.88267 1.21892 1.02925 0.95397 0.99402 1.62248 1.45777 0.99910 1.17736 1.22468 0.98363 1.02382 0.88968 1.20090 0.89463 0.90693 0.94035 1.21141 0.96111 0.98571 1.39338 0.91902 1.24968 0.94825 0.98729 0.95822 1.69945 1.06974 1.33458 1.42811 0.86531 0.79749 0.83335 0.78028 1.20760 1.21231 1.19797 0.93958 0.93144 0.91647 0.92758 0.91782 0.82571 0.85967 0.82127 0.83167 0.83651 0.85754 0.96546 0.90318 0.93382 0.97888 0.94417 0.92784 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.92 9.80 37.16 0.36 -1.56 16 2 C -0.11 -1.56 5.29 -26.73 -0.14 -1.70 16 3 C 0.07 1.15 1.74 -67.72 -0.12 1.03 16 4 H 0.10 1.88 6.21 -51.93 -0.32 1.56 16 5 N -0.84 -13.19 7.86 -4.67 -0.04 -13.23 16 6 C 0.08 1.38 1.88 -68.86 -0.13 1.25 16 7 H 0.07 1.11 7.70 -51.93 -0.40 0.71 16 8 C -0.01 -0.20 4.37 -104.32 -0.46 -0.66 16 9 C -0.14 -2.63 8.94 -39.44 -0.35 -2.98 16 10 C 0.09 1.50 11.18 -17.55 -0.20 1.30 16 11 N -0.50 -8.21 10.36 -13.25 -0.14 -8.34 16 12 C 0.08 1.18 11.18 -17.55 -0.20 0.99 16 13 C -0.18 -2.48 8.21 -39.44 -0.32 -2.81 16 14 N -0.53 -10.21 4.15 -237.73 -0.99 -11.20 16 15 C 0.03 0.46 9.01 60.06 0.54 1.00 16 16 C 0.18 4.16 2.29 -4.97 -0.01 4.15 16 17 C -0.51 -13.30 8.53 -34.44 -0.29 -13.59 16 18 H 0.06 1.66 7.74 -52.49 -0.41 1.25 16 19 C 0.06 1.57 5.46 -17.82 -0.10 1.47 16 20 N -0.89 -24.92 13.29 55.43 0.74 -24.18 16 21 Si 0.90 20.79 29.54 -169.99 -5.02 15.77 16 22 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 23 H -0.29 -6.66 7.11 56.52 0.40 -6.25 16 24 H -0.27 -6.31 7.11 56.52 0.40 -5.90 16 25 H 0.04 0.50 8.14 -51.93 -0.42 0.07 16 26 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 27 H 0.06 0.92 7.75 -51.92 -0.40 0.52 16 28 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 29 H 0.06 0.89 6.04 -51.93 -0.31 0.58 16 30 H 0.35 6.33 4.60 -39.29 -0.18 6.15 16 31 H 0.33 4.46 8.27 -39.29 -0.32 4.13 16 32 H 0.16 3.39 5.05 -52.49 -0.27 3.12 16 33 H 0.15 2.25 8.06 -52.49 -0.42 1.83 16 34 H 0.15 1.61 8.06 -52.49 -0.42 1.19 16 35 H 0.12 1.44 8.06 -52.48 -0.42 1.01 16 36 H 0.02 0.25 5.02 -51.93 -0.26 -0.01 16 37 H 0.08 1.48 7.34 -51.93 -0.38 1.10 16 38 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 39 H 0.00 0.09 5.29 -51.93 -0.27 -0.19 16 40 H 0.04 0.93 4.56 -51.93 -0.24 0.70 16 41 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 LS Contribution 315.05 15.07 4.75 4.75 Total: -1.00 -27.54 315.05 -7.97 -35.52 By element: Atomic # 1 Polarization: 18.90 SS G_CDS: -5.86 Total: 13.04 kcal Atomic # 6 Polarization: -10.71 SS G_CDS: -1.41 Total: -12.12 kcal Atomic # 7 Polarization: -56.53 SS G_CDS: -0.42 Total: -56.96 kcal Atomic # 14 Polarization: 20.79 SS G_CDS: -5.02 Total: 15.77 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -27.54 -7.97 -35.52 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000043353144.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.804 kcal (2) G-P(sol) polarization free energy of solvation -27.545 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.259 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.971 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.516 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.288 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds