Wall clock time and date at job start Mon Mar 30 2020 05:01:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13596 * 1 3 3 C 1.47204 * 179.97438 * 2 1 4 4 N 1.46905 * 109.46686 * 213.33112 * 3 2 1 5 5 C 1.46903 * 111.00151 * 314.30772 * 4 3 2 6 6 C 1.53240 * 109.36777 * 172.71480 * 5 4 3 7 7 N 1.47113 * 108.49407 * 53.89447 * 6 5 4 8 8 C 1.36935 * 120.90002 * 128.94191 * 7 6 5 9 9 H 1.08004 * 120.00181 * 216.98719 * 8 7 6 10 10 C 1.38806 * 120.00059 * 36.99067 * 8 7 6 11 11 N 1.31621 * 120.00085 * 8.57153 * 10 8 7 12 12 Si 1.86803 * 120.00033 * 188.57641 * 10 8 7 13 13 H 1.48492 * 109.47192 * 59.99919 * 12 10 8 14 14 H 1.48502 * 109.47058 * 180.02562 * 12 10 8 15 15 H 1.48500 * 109.46742 * 299.99606 * 12 10 8 16 16 C 1.46951 * 118.20158 * 308.93624 * 7 6 5 17 17 C 1.52864 * 109.47091 * 291.20859 * 16 7 6 18 18 C 1.53032 * 109.46270 * 299.60444 * 17 16 7 19 19 C 1.52995 * 109.45170 * 300.14370 * 18 17 16 20 20 C 1.52997 * 109.49117 * 60.07776 * 19 18 17 21 21 C 1.52848 * 109.49962 * 170.87150 * 16 7 6 22 22 C 1.46931 * 110.99825 * 190.00156 * 4 3 2 23 23 H 1.09002 * 109.47143 * 93.33483 * 3 2 1 24 24 H 1.08998 * 109.47507 * 333.33064 * 3 2 1 25 25 H 1.09000 * 109.49187 * 292.68921 * 5 4 3 26 26 H 1.09003 * 109.48231 * 52.72867 * 5 4 3 27 27 H 1.08999 * 109.62855 * 173.59272 * 6 5 4 28 28 H 1.09002 * 109.63283 * 294.18735 * 6 5 4 29 29 H 0.97000 * 120.00283 * 180.02562 * 11 10 8 30 30 H 1.09002 * 109.47090 * 179.60997 * 17 16 7 31 31 H 1.08992 * 109.47723 * 59.60428 * 17 16 7 32 32 H 1.08995 * 109.47353 * 180.14885 * 18 17 16 33 33 H 1.08996 * 109.47186 * 60.14232 * 18 17 16 34 34 H 1.09004 * 109.45934 * 180.02562 * 19 18 17 35 35 H 1.08994 * 109.46683 * 300.06336 * 19 18 17 36 36 H 1.08992 * 109.47384 * 59.94685 * 20 19 18 37 37 H 1.08992 * 109.46833 * 179.97438 * 20 19 18 38 38 H 1.08998 * 109.47487 * 180.40376 * 21 16 7 39 39 H 1.08998 * 109.46671 * 300.40668 * 21 16 7 40 40 H 1.08999 * 109.49473 * 67.11288 * 22 4 3 41 41 H 1.09005 * 109.49348 * 307.02855 * 22 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 7 3.0971 1.1581 0.7611 5 6 2.3688 2.3785 0.3893 6 6 2.7774 3.5197 1.3268 7 7 4.2434 3.6402 1.3038 8 6 4.8462 4.8491 1.0790 9 1 5.7545 4.8996 0.4968 10 6 4.2899 6.0094 1.5993 11 7 3.2842 5.9352 2.4452 12 14 4.9684 7.6764 1.0989 13 1 4.8371 7.8434 -0.3708 14 1 4.2070 8.7483 1.7893 15 1 6.4008 7.7627 1.4810 16 6 5.0435 2.4283 1.5287 17 6 4.8841 1.9746 2.9797 18 6 5.3743 3.0808 3.9167 19 6 6.8479 3.3755 3.6300 20 6 7.0041 3.8326 2.1782 21 6 6.5144 2.7271 1.2401 22 6 4.5461 1.3283 0.5874 23 1 2.9713 0.0606 -1.0259 24 1 2.9718 -0.9175 0.4612 25 1 2.6112 2.6478 -0.6387 26 1 1.2965 2.2026 0.4759 27 1 2.3279 4.4524 0.9859 28 1 2.4440 3.2981 2.3406 29 1 2.8952 6.7461 2.8085 30 1 5.4721 1.0717 3.1447 31 1 3.8336 1.7661 3.1820 32 1 5.2631 2.7564 4.9513 33 1 4.7847 3.9829 3.7534 34 1 7.1973 4.1631 4.2976 35 1 7.4371 2.4729 3.7921 36 1 6.4143 4.7347 2.0159 37 1 8.0539 4.0428 1.9745 38 1 7.1065 1.8261 1.4001 39 1 6.6226 3.0540 0.2059 40 1 4.7584 1.6089 -0.4442 41 1 5.0530 0.3921 0.8219 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000081526826.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:01:23 Heat of formation + Delta-G solvation = 62.273885 kcal Electronic energy + Delta-G solvation = -21704.290397 eV Core-core repulsion = 18813.035918 eV Total energy + Delta-G solvation = -2891.254479 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.169 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -39.47872 -37.26153 -35.54489 -33.76360 -31.59269 -30.52443 -29.85608 -28.27481 -26.28313 -24.49933 -22.61703 -21.92768 -21.23618 -19.46176 -18.04413 -17.25000 -16.57687 -15.60832 -14.97538 -14.74320 -14.39858 -13.78045 -13.62974 -13.52378 -13.24323 -13.13826 -12.63276 -12.42194 -12.30585 -11.99305 -11.56415 -11.28731 -11.20249 -11.13347 -11.04382 -10.80412 -10.76348 -10.50732 -10.26304 -10.06210 -9.83120 -9.72122 -9.51366 -9.18149 -8.99715 -8.25076 -7.99960 -6.45800 -5.81783 -3.30875 2.78447 2.90783 3.33847 3.40120 3.41886 4.06711 4.38417 4.44542 5.20023 5.30463 5.33931 5.42346 5.64873 5.71210 5.79577 5.84994 5.92534 6.10511 6.11570 6.23880 6.31658 6.40016 6.43008 6.54484 6.57666 6.61955 6.68625 6.75848 6.91525 7.03837 7.14228 7.26364 7.36336 7.37376 7.50675 7.60477 7.64860 7.69964 7.76219 7.84031 8.46720 9.19032 9.78392 10.43341 11.23979 Molecular weight = 263.17amu Principal moments of inertia in cm(-1) A = 0.019573 B = 0.008348 C = 0.006728 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1430.227865 B = 3353.177115 C = 4160.432492 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.439 5.439 2 C 0.219 3.781 3 C 0.142 3.858 4 N -0.524 5.524 5 C 0.027 3.973 6 C 0.185 3.815 7 N -0.577 5.577 8 C -0.243 4.243 9 H 0.069 0.931 10 C 0.012 3.988 11 N -0.893 5.893 12 Si 0.892 3.108 13 H -0.284 1.284 14 H -0.291 1.291 15 H -0.280 1.280 16 C 0.202 3.798 17 C -0.109 4.109 18 C -0.115 4.115 19 C -0.103 4.103 20 C -0.153 4.153 21 C -0.093 4.093 22 C 0.055 3.945 23 H 0.073 0.927 24 H 0.113 0.887 25 H 0.030 0.970 26 H 0.058 0.942 27 H 0.079 0.921 28 H 0.031 0.969 29 H 0.255 0.745 30 H 0.034 0.966 31 H 0.062 0.938 32 H 0.030 0.970 33 H 0.098 0.902 34 H 0.042 0.958 35 H 0.034 0.966 36 H 0.136 0.864 37 H 0.029 0.971 38 H 0.041 0.959 39 H 0.053 0.947 40 H 0.034 0.966 41 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.708 -8.638 -2.587 10.172 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.117 5.117 2 C -0.099 4.099 3 C 0.012 3.988 4 N -0.250 5.250 5 C -0.102 4.102 6 C 0.059 3.941 7 N -0.299 5.299 8 C -0.373 4.373 9 H 0.086 0.914 10 C -0.188 4.188 11 N -0.535 5.535 12 Si 0.721 3.279 13 H -0.210 1.210 14 H -0.217 1.217 15 H -0.206 1.206 16 C 0.113 3.887 17 C -0.148 4.148 18 C -0.153 4.153 19 C -0.140 4.140 20 C -0.189 4.189 21 C -0.131 4.131 22 C -0.074 4.074 23 H 0.090 0.910 24 H 0.131 0.869 25 H 0.049 0.951 26 H 0.077 0.923 27 H 0.097 0.903 28 H 0.049 0.951 29 H 0.066 0.934 30 H 0.053 0.947 31 H 0.080 0.920 32 H 0.049 0.951 33 H 0.116 0.884 34 H 0.061 0.939 35 H 0.052 0.948 36 H 0.153 0.847 37 H 0.048 0.952 38 H 0.060 0.940 39 H 0.072 0.928 40 H 0.053 0.947 41 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 2.828 -8.563 -2.009 9.239 hybrid contribution 0.906 0.941 -0.980 1.633 sum 3.735 -7.622 -2.989 8.998 Atomic orbital electron populations 1.81181 1.13055 1.08561 1.08945 1.29031 0.95193 0.92818 0.92827 1.19752 0.81519 0.98321 0.99247 1.62208 1.05328 1.03136 1.54292 1.23077 0.96447 0.91306 0.99396 1.20743 0.84513 0.93744 0.95121 1.43987 1.00109 1.03199 1.82646 1.18829 1.09121 0.83418 1.25916 0.91382 1.25270 0.98751 0.98154 0.96613 1.69920 1.25444 1.27393 1.30736 0.86550 0.78779 0.84395 0.78152 1.21022 1.21663 1.20614 1.19796 0.90627 0.86651 0.91586 1.21747 1.00460 0.96116 0.96499 1.21465 0.96240 1.01494 0.96087 1.21347 0.96871 0.98502 0.97329 1.22407 0.99470 1.03637 0.93419 1.21343 0.94785 0.97676 0.99340 1.22661 0.85838 0.99804 0.99094 0.90950 0.86882 0.95137 0.92349 0.90316 0.95066 0.93442 0.94739 0.91973 0.95135 0.88384 0.93916 0.94759 0.84689 0.95205 0.93995 0.92786 0.94730 0.91430 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.44 -7.35 18.54 42.15 0.78 -6.57 16 2 C 0.22 3.13 13.42 -20.76 -0.28 2.85 16 3 C 0.14 1.65 5.77 -6.61 -0.04 1.61 16 4 N -0.52 -8.09 4.27 -237.89 -1.01 -9.11 16 5 C 0.03 0.49 5.25 -3.70 -0.02 0.47 16 6 C 0.18 4.06 4.92 -3.58 -0.02 4.04 16 7 N -0.58 -12.52 1.98 -157.56 -0.31 -12.83 16 8 C -0.24 -5.77 5.62 -15.06 -0.08 -5.85 16 9 H 0.07 1.62 5.71 -52.48 -0.30 1.32 16 10 C 0.01 0.31 5.00 -17.43 -0.09 0.22 16 11 N -0.89 -23.58 11.45 55.49 0.64 -22.94 16 12 Si 0.89 20.19 29.56 -169.99 -5.03 15.16 16 13 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 14 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 15 H -0.28 -6.28 7.11 56.52 0.40 -5.87 16 16 C 0.20 3.71 0.67 -131.68 -0.09 3.63 16 17 C -0.11 -2.01 4.60 -26.78 -0.12 -2.13 16 18 C -0.12 -2.28 5.75 -26.72 -0.15 -2.44 16 19 C -0.10 -1.88 5.92 -26.74 -0.16 -2.04 16 20 C -0.15 -2.90 5.27 -26.72 -0.14 -3.04 16 21 C -0.09 -1.64 4.25 -26.79 -0.11 -1.75 16 22 C 0.06 0.85 4.26 -3.76 -0.02 0.83 16 23 H 0.07 0.71 8.08 -51.93 -0.42 0.29 16 24 H 0.11 1.00 8.14 -51.93 -0.42 0.58 16 25 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 26 H 0.06 1.06 6.46 -51.93 -0.34 0.73 16 27 H 0.08 1.94 6.68 -51.93 -0.35 1.60 16 28 H 0.03 0.76 7.61 -51.93 -0.40 0.36 16 29 H 0.26 6.72 8.31 -40.82 -0.34 6.38 16 30 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.06 1.24 7.06 -51.93 -0.37 0.87 16 32 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.10 2.35 7.36 -51.93 -0.38 1.97 16 34 H 0.04 0.77 8.14 -51.93 -0.42 0.34 16 35 H 0.03 0.57 8.14 -51.93 -0.42 0.14 16 36 H 0.14 3.01 3.97 -51.93 -0.21 2.80 16 37 H 0.03 0.52 8.14 -51.93 -0.42 0.09 16 38 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 39 H 0.05 0.97 7.51 -51.93 -0.39 0.58 16 40 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 41 H 0.07 0.88 8.11 -51.93 -0.42 0.46 16 LS Contribution 307.94 15.07 4.64 4.64 Total: -1.00 -26.17 307.94 -8.12 -34.29 By element: Atomic # 1 Polarization: 7.47 SS G_CDS: -6.50 Total: 0.97 kcal Atomic # 6 Polarization: -2.29 SS G_CDS: -1.32 Total: -3.61 kcal Atomic # 7 Polarization: -51.54 SS G_CDS: 0.09 Total: -51.45 kcal Atomic # 14 Polarization: 20.19 SS G_CDS: -5.03 Total: 15.16 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -26.17 -8.12 -34.29 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000081526826.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.564 kcal (2) G-P(sol) polarization free energy of solvation -26.174 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.390 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.116 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.290 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.274 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds