Wall clock time and date at job start Mon Mar 30 2020 05:01:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13596 * 1 3 3 C 1.47204 * 179.97438 * 2 1 4 4 N 1.46905 * 109.46686 * 213.33112 * 3 2 1 5 5 C 1.46903 * 111.00151 * 314.30772 * 4 3 2 6 6 C 1.53240 * 109.36777 * 172.71480 * 5 4 3 7 7 N 1.47113 * 108.49407 * 53.89447 * 6 5 4 8 8 C 1.36935 * 120.90002 * 128.94191 * 7 6 5 9 9 H 1.08004 * 120.00181 * 216.98719 * 8 7 6 10 10 C 1.38806 * 120.00059 * 36.99067 * 8 7 6 11 11 N 1.31621 * 120.00085 * 8.57153 * 10 8 7 12 12 Si 1.86803 * 120.00033 * 188.57641 * 10 8 7 13 13 H 1.48492 * 109.47192 * 59.99919 * 12 10 8 14 14 H 1.48502 * 109.47058 * 180.02562 * 12 10 8 15 15 H 1.48500 * 109.46742 * 299.99606 * 12 10 8 16 16 C 1.46951 * 118.20158 * 308.93624 * 7 6 5 17 17 C 1.52864 * 109.47091 * 291.20859 * 16 7 6 18 18 C 1.53032 * 109.46270 * 299.60444 * 17 16 7 19 19 C 1.52995 * 109.45170 * 300.14370 * 18 17 16 20 20 C 1.52997 * 109.49117 * 60.07776 * 19 18 17 21 21 C 1.52848 * 109.49962 * 170.87150 * 16 7 6 22 22 C 1.46931 * 110.99825 * 190.00156 * 4 3 2 23 23 H 1.09002 * 109.47143 * 93.33483 * 3 2 1 24 24 H 1.08998 * 109.47507 * 333.33064 * 3 2 1 25 25 H 1.09000 * 109.49187 * 292.68921 * 5 4 3 26 26 H 1.09003 * 109.48231 * 52.72867 * 5 4 3 27 27 H 1.08999 * 109.62855 * 173.59272 * 6 5 4 28 28 H 1.09002 * 109.63283 * 294.18735 * 6 5 4 29 29 H 0.97000 * 120.00283 * 180.02562 * 11 10 8 30 30 H 1.09002 * 109.47090 * 179.60997 * 17 16 7 31 31 H 1.08992 * 109.47723 * 59.60428 * 17 16 7 32 32 H 1.08995 * 109.47353 * 180.14885 * 18 17 16 33 33 H 1.08996 * 109.47186 * 60.14232 * 18 17 16 34 34 H 1.09004 * 109.45934 * 180.02562 * 19 18 17 35 35 H 1.08994 * 109.46683 * 300.06336 * 19 18 17 36 36 H 1.08992 * 109.47384 * 59.94685 * 20 19 18 37 37 H 1.08992 * 109.46833 * 179.97438 * 20 19 18 38 38 H 1.08998 * 109.47487 * 180.40376 * 21 16 7 39 39 H 1.08998 * 109.46671 * 300.40668 * 21 16 7 40 40 H 1.08999 * 109.49473 * 67.11288 * 22 4 3 41 41 H 1.09005 * 109.49348 * 307.02855 * 22 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 7 3.0971 1.1581 0.7611 5 6 2.3688 2.3785 0.3893 6 6 2.7774 3.5197 1.3268 7 7 4.2434 3.6402 1.3038 8 6 4.8462 4.8491 1.0790 9 1 5.7545 4.8996 0.4968 10 6 4.2899 6.0094 1.5993 11 7 3.2842 5.9352 2.4452 12 14 4.9684 7.6764 1.0989 13 1 4.8371 7.8434 -0.3708 14 1 4.2070 8.7483 1.7893 15 1 6.4008 7.7627 1.4810 16 6 5.0435 2.4283 1.5287 17 6 4.8841 1.9746 2.9797 18 6 5.3743 3.0808 3.9167 19 6 6.8479 3.3755 3.6300 20 6 7.0041 3.8326 2.1782 21 6 6.5144 2.7271 1.2401 22 6 4.5461 1.3283 0.5874 23 1 2.9713 0.0606 -1.0259 24 1 2.9718 -0.9175 0.4612 25 1 2.6112 2.6478 -0.6387 26 1 1.2965 2.2026 0.4759 27 1 2.3279 4.4524 0.9859 28 1 2.4440 3.2981 2.3406 29 1 2.8952 6.7461 2.8085 30 1 5.4721 1.0717 3.1447 31 1 3.8336 1.7661 3.1820 32 1 5.2631 2.7564 4.9513 33 1 4.7847 3.9829 3.7534 34 1 7.1973 4.1631 4.2976 35 1 7.4371 2.4729 3.7921 36 1 6.4143 4.7347 2.0159 37 1 8.0539 4.0428 1.9745 38 1 7.1065 1.8261 1.4001 39 1 6.6226 3.0540 0.2059 40 1 4.7584 1.6089 -0.4442 41 1 5.0530 0.3921 0.8219 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000081526826.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:01:22 Heat of formation + Delta-G solvation = 47.185285 kcal Electronic energy + Delta-G solvation = -21704.944688 eV Core-core repulsion = 18813.035918 eV Total energy + Delta-G solvation = -2891.908769 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.169 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.92378 -38.52995 -36.83090 -35.45213 -33.17322 -32.05448 -31.40883 -29.68721 -27.66532 -26.09863 -24.16871 -23.42145 -22.72230 -20.94636 -19.64108 -18.43755 -18.20519 -17.08650 -16.37185 -16.01688 -15.90692 -15.30797 -15.05041 -14.99194 -14.83812 -14.64666 -14.13418 -13.66832 -13.56206 -13.45296 -13.02079 -12.83712 -12.66747 -12.63171 -12.51044 -12.46106 -12.28987 -12.11232 -11.98522 -11.66514 -11.44704 -11.33752 -11.16639 -10.65383 -10.48836 -10.06629 -9.21206 -8.24812 -7.69272 -5.19224 1.49527 1.52100 1.55449 1.66606 1.82937 2.57723 3.03743 3.20316 3.44210 3.68789 4.20276 4.24356 4.31343 4.38457 4.46152 4.55208 4.61636 4.71268 4.77501 4.84557 4.91610 4.95310 5.03838 5.08635 5.12130 5.15814 5.20046 5.31563 5.38102 5.43909 5.68985 5.72905 5.76564 5.80425 5.91084 6.01582 6.15814 6.20573 6.21906 6.59478 6.61551 7.32805 8.02029 8.60284 9.33314 Molecular weight = 263.17amu Principal moments of inertia in cm(-1) A = 0.019573 B = 0.008348 C = 0.006728 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1430.227865 B = 3353.177115 C = 4160.432492 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.492 5.492 2 C 0.238 3.762 3 C 0.146 3.854 4 N -0.534 5.534 5 C 0.046 3.954 6 C 0.196 3.804 7 N -0.586 5.586 8 C -0.219 4.219 9 H 0.073 0.927 10 C -0.039 4.039 11 N -0.926 5.926 12 Si 0.937 3.063 13 H -0.283 1.283 14 H -0.306 1.306 15 H -0.275 1.275 16 C 0.191 3.809 17 C -0.101 4.101 18 C -0.115 4.115 19 C -0.098 4.098 20 C -0.154 4.154 21 C -0.089 4.089 22 C 0.061 3.939 23 H 0.105 0.895 24 H 0.156 0.844 25 H 0.031 0.969 26 H 0.052 0.948 27 H 0.039 0.961 28 H -0.004 1.004 29 H 0.242 0.758 30 H 0.067 0.933 31 H 0.040 0.960 32 H 0.035 0.965 33 H 0.047 0.953 34 H 0.035 0.965 35 H 0.064 0.936 36 H 0.097 0.903 37 H 0.046 0.954 38 H 0.077 0.923 39 H 0.051 0.949 40 H 0.039 0.961 41 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.243 -11.784 -3.797 14.344 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.171 5.171 2 C -0.079 4.079 3 C 0.016 3.984 4 N -0.261 5.261 5 C -0.083 4.083 6 C 0.069 3.931 7 N -0.309 5.309 8 C -0.349 4.349 9 H 0.090 0.910 10 C -0.235 4.235 11 N -0.572 5.572 12 Si 0.768 3.232 13 H -0.209 1.209 14 H -0.233 1.233 15 H -0.200 1.200 16 C 0.103 3.897 17 C -0.140 4.140 18 C -0.153 4.153 19 C -0.135 4.135 20 C -0.191 4.191 21 C -0.128 4.128 22 C -0.068 4.068 23 H 0.123 0.877 24 H 0.174 0.826 25 H 0.049 0.951 26 H 0.070 0.930 27 H 0.057 0.943 28 H 0.014 0.986 29 H 0.052 0.948 30 H 0.085 0.915 31 H 0.059 0.941 32 H 0.054 0.946 33 H 0.065 0.935 34 H 0.054 0.946 35 H 0.082 0.918 36 H 0.114 0.886 37 H 0.065 0.935 38 H 0.096 0.904 39 H 0.070 0.930 40 H 0.057 0.943 41 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 5.393 -11.737 -3.241 13.317 hybrid contribution 0.183 1.864 -0.567 1.957 sum 5.575 -9.873 -3.808 11.961 Atomic orbital electron populations 1.81207 1.14891 1.10171 1.10808 1.29600 0.95753 0.91311 0.91239 1.20096 0.79386 0.97803 1.01067 1.62084 1.05482 1.02766 1.55728 1.22637 0.96372 0.91469 0.97854 1.20355 0.85006 0.93671 0.94032 1.44155 1.00132 1.03952 1.82679 1.19022 1.08032 0.84193 1.23700 0.90990 1.25757 0.99683 1.00508 0.97582 1.70083 1.27364 1.26737 1.33002 0.85803 0.78206 0.81750 0.77481 1.20916 1.23298 1.20034 1.20133 0.91015 0.86077 0.92456 1.21660 0.99599 0.96615 0.96119 1.21383 0.96850 0.99982 0.97050 1.21300 0.95807 0.99597 0.96799 1.22276 0.99837 1.02610 0.94387 1.21343 0.94296 0.98502 0.98614 1.22596 0.85601 1.00281 0.98287 0.87722 0.82648 0.95122 0.92978 0.94254 0.98569 0.94848 0.91468 0.94099 0.94575 0.93452 0.94568 0.91780 0.88572 0.93517 0.90425 0.93036 0.94251 0.87198 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.49 -15.99 18.54 20.01 0.37 -15.62 16 2 C 0.24 6.18 13.42 89.44 1.20 7.38 16 3 C 0.15 2.65 5.77 84.50 0.49 3.14 16 4 N -0.53 -14.68 4.27 -906.55 -3.87 -18.55 16 5 C 0.05 1.65 5.25 86.38 0.45 2.10 16 6 C 0.20 8.92 4.92 86.34 0.42 9.35 16 7 N -0.59 -25.46 1.98 -652.40 -1.29 -26.75 16 8 C -0.22 -10.52 5.62 84.03 0.47 -10.05 16 9 H 0.07 3.39 5.71 -2.91 -0.02 3.37 16 10 C -0.04 -2.05 5.00 84.86 0.42 -1.62 16 11 N -0.93 -52.23 11.45 21.65 0.25 -51.98 16 12 Si 0.94 43.03 29.56 68.60 2.03 45.05 16 13 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 14 H -0.31 -14.68 7.11 99.48 0.71 -13.98 16 15 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 16 C 0.19 6.47 0.67 3.45 0.00 6.47 16 17 C -0.10 -3.46 4.60 30.56 0.14 -3.32 16 18 C -0.11 -4.48 5.75 30.60 0.18 -4.30 16 19 C -0.10 -3.34 5.92 30.59 0.18 -3.16 16 20 C -0.15 -5.50 5.27 30.60 0.16 -5.34 16 21 C -0.09 -2.79 4.25 30.56 0.13 -2.66 16 22 C 0.06 1.57 4.26 86.33 0.37 1.93 16 23 H 0.11 1.40 8.08 -2.39 -0.02 1.38 16 24 H 0.16 1.68 8.14 -2.39 -0.02 1.66 16 25 H 0.03 1.08 8.14 -2.39 -0.02 1.06 16 26 H 0.05 1.90 6.46 -2.39 -0.02 1.89 16 27 H 0.04 2.07 6.68 -2.39 -0.02 2.05 16 28 H 0.00 -0.20 7.61 -2.39 -0.02 -0.21 16 29 H 0.24 13.74 8.31 -92.71 -0.77 12.97 16 30 H 0.07 1.90 8.14 -2.39 -0.02 1.88 16 31 H 0.04 1.58 7.06 -2.39 -0.02 1.56 16 32 H 0.04 1.32 8.14 -2.39 -0.02 1.30 16 33 H 0.05 2.35 7.36 -2.39 -0.02 2.33 16 34 H 0.04 1.26 8.14 -2.39 -0.02 1.24 16 35 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 36 H 0.10 4.25 3.97 -2.39 -0.01 4.24 16 37 H 0.05 1.49 8.14 -2.39 -0.02 1.47 16 38 H 0.08 1.92 8.14 -2.39 -0.02 1.90 16 39 H 0.05 1.64 7.51 -2.39 -0.02 1.62 16 40 H 0.04 1.02 8.14 -2.39 -0.02 1.00 16 41 H 0.11 2.01 8.11 -2.38 -0.02 1.99 16 Total: -1.00 -61.99 307.94 3.12 -58.88 By element: Atomic # 1 Polarization: 8.04 SS G_CDS: 1.01 Total: 9.05 kcal Atomic # 6 Polarization: -4.70 SS G_CDS: 4.62 Total: -0.08 kcal Atomic # 7 Polarization: -108.36 SS G_CDS: -4.54 Total: -112.90 kcal Atomic # 14 Polarization: 43.03 SS G_CDS: 2.03 Total: 45.05 kcal Total: -61.99 3.12 -58.88 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000081526826.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.061 kcal (2) G-P(sol) polarization free energy of solvation -61.993 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.067 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.118 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.875 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.185 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds