Wall clock time and date at job start Mon Mar 30 2020 05:05:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.31074 * 125.96155 * 2 1 4 4 N 1.40293 * 108.26980 * 179.73811 * 3 2 1 5 5 C 1.46497 * 126.09326 * 179.91141 * 4 3 2 6 6 C 1.50700 * 109.47117 * 90.01945 * 5 4 3 7 7 H 1.07997 * 120.00139 * 0.02562 * 6 5 4 8 8 C 1.37885 * 120.00044 * 180.02562 * 6 5 4 9 9 N 1.31513 * 119.99660 * 359.97438 * 8 6 5 10 10 Si 1.86795 * 120.00182 * 180.02562 * 8 6 5 11 11 H 1.48504 * 109.47021 * 359.97438 * 10 8 6 12 12 H 1.48502 * 109.47072 * 119.99929 * 10 8 6 13 13 H 1.48494 * 109.47210 * 239.99847 * 10 8 6 14 14 C 1.34324 * 107.81592 * 359.94040 * 4 3 2 15 15 C 1.35752 * 107.84683 * 0.10137 * 14 4 3 16 16 C 1.50838 * 124.10985 * 179.81205 * 15 14 4 17 17 H 1.08992 * 109.68448 * 103.21070 * 16 15 14 18 18 C 1.52998 * 109.71226 * 223.75343 * 16 15 14 19 19 C 1.53002 * 109.47266 * 183.94264 * 18 16 15 20 20 N 1.46902 * 109.47101 * 179.97438 * 19 18 16 21 21 C 1.53367 * 108.37958 * 343.49035 * 16 15 14 22 22 C 1.53110 * 109.50583 * 49.94830 * 21 16 15 23 23 C 1.50832 * 128.03226 * 180.18263 * 14 4 3 24 24 H 1.08995 * 109.47421 * 90.02135 * 1 2 3 25 25 H 1.08997 * 109.46724 * 210.02444 * 1 2 3 26 26 H 1.09004 * 109.46624 * 330.01891 * 1 2 3 27 27 H 1.08995 * 109.47319 * 210.02006 * 5 4 3 28 28 H 1.08998 * 109.46893 * 330.02438 * 5 4 3 29 29 H 0.96996 * 119.99733 * 179.97438 * 9 8 6 30 30 H 1.09003 * 109.47128 * 303.93623 * 18 16 15 31 31 H 1.09000 * 109.47471 * 63.93789 * 18 16 15 32 32 H 1.09003 * 109.46524 * 299.99729 * 19 18 16 33 33 H 1.09000 * 109.47264 * 59.99397 * 19 18 16 34 34 H 1.00895 * 111.00053 * 56.04686 * 20 19 18 35 35 H 1.00901 * 110.99704 * 179.97438 * 20 19 18 36 36 H 1.08994 * 109.46676 * 289.93366 * 21 16 15 37 37 H 1.08999 * 109.46116 * 169.95391 * 21 16 15 38 38 H 1.09003 * 109.46368 * 169.70305 * 22 21 16 39 39 H 1.08992 * 109.46758 * 49.71656 * 22 21 16 40 40 H 1.08998 * 109.67942 * 283.13535 * 23 14 4 41 41 H 1.08999 * 109.67836 * 43.68979 * 23 14 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2768 1.0609 0.0000 4 7 3.6133 0.6346 0.0061 5 6 4.7953 1.5001 0.0063 6 6 5.1963 1.8024 1.4272 7 1 4.6278 1.3906 2.2480 8 6 6.2889 2.6048 1.6793 9 7 6.9814 3.1058 0.6798 10 14 6.7864 2.9789 3.4405 11 1 5.8520 2.2997 4.3738 12 1 8.1680 2.4896 3.6792 13 1 6.7343 4.4453 3.6687 14 6 3.6162 -0.7086 0.0110 15 6 2.3249 -1.1275 0.0059 16 6 1.9057 -2.5764 0.0050 17 1 1.5742 -2.8634 1.0028 18 6 0.7670 -2.7835 -0.9957 19 6 0.2800 -4.2321 -0.9216 20 7 -0.8137 -4.4307 -1.8820 21 6 3.1134 -3.4291 -0.4032 22 6 4.3282 -3.0315 0.4398 23 6 4.8063 -1.6353 0.0223 24 1 -0.3634 -0.0004 -1.0276 25 1 -0.3633 -0.8898 0.5142 26 1 -0.3633 0.8902 0.5136 27 1 5.6158 0.9948 -0.5031 28 1 4.5641 2.4308 -0.5118 29 1 7.7498 3.6705 0.8572 30 1 -0.0560 -2.1109 -0.7540 31 1 1.1255 -2.5717 -2.0030 32 1 1.1030 -4.9048 -1.1634 33 1 -0.0784 -4.4439 0.0857 34 1 -0.5254 -4.1788 -2.8155 35 1 -1.1526 -5.3807 -1.8526 36 1 3.3339 -3.2653 -1.4579 37 1 2.8864 -4.4824 -0.2389 38 1 5.1307 -3.7522 0.2829 39 1 4.0510 -3.0203 1.4938 40 1 5.2457 -1.6805 -0.9742 41 1 5.5471 -1.2727 0.7348 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000082827434.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:05:45 Heat of formation + Delta-G solvation = 41.822521 kcal Electronic energy + Delta-G solvation = -20327.726615 eV Core-core repulsion = 17435.585298 eV Total energy + Delta-G solvation = -2892.141316 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.169 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.85379 -37.15451 -34.98989 -34.04688 -32.63910 -30.79451 -29.12142 -28.77419 -26.93182 -25.72140 -23.33591 -22.41813 -21.81394 -20.48310 -18.76452 -18.13894 -16.70562 -15.96241 -15.67747 -15.15425 -14.72676 -14.49886 -14.07746 -13.90159 -13.48206 -13.10223 -12.95438 -12.66811 -12.64489 -12.22099 -12.05476 -11.72371 -11.60078 -11.55141 -11.23625 -10.95669 -10.85738 -10.76904 -10.58092 -10.42334 -10.22397 -9.95393 -9.69788 -9.51919 -8.78726 -8.65380 -8.13731 -7.37714 -6.26403 -4.33796 2.82067 3.19349 3.27335 3.32950 3.44382 3.62890 4.29265 4.46622 4.95576 5.00808 5.06546 5.11766 5.17285 5.28396 5.40593 5.59678 5.61852 5.63552 5.76503 5.86096 5.90660 5.92539 6.00606 6.07201 6.15594 6.19104 6.23772 6.35230 6.36666 6.49072 6.60995 6.66417 6.94030 7.00111 7.02939 7.15031 7.27831 7.57051 7.66821 7.88848 8.09940 8.69714 8.77864 9.32663 10.81186 Molecular weight = 263.17amu Principal moments of inertia in cm(-1) A = 0.029961 B = 0.004985 C = 0.004609 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 934.328820 B = 5615.751769 C = 6073.228903 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 C 0.054 3.946 3 N -0.302 5.302 4 N -0.320 5.320 5 C 0.256 3.744 6 C -0.535 4.535 7 H 0.064 0.936 8 C 0.065 3.935 9 N -0.892 5.892 10 Si 0.906 3.094 11 H -0.271 1.271 12 H -0.281 1.281 13 H -0.280 1.280 14 C 0.092 3.908 15 C -0.262 4.262 16 C 0.005 3.995 17 H 0.066 0.934 18 C -0.116 4.116 19 C 0.059 3.941 20 N -0.854 5.854 21 C -0.112 4.112 22 C -0.110 4.110 23 C -0.055 4.055 24 H 0.067 0.933 25 H 0.071 0.929 26 H 0.063 0.937 27 H 0.050 0.950 28 H 0.051 0.949 29 H 0.267 0.733 30 H 0.081 0.919 31 H 0.057 0.943 32 H 0.026 0.974 33 H 0.069 0.931 34 H 0.339 0.661 35 H 0.337 0.663 36 H 0.060 0.940 37 H 0.058 0.942 38 H 0.065 0.935 39 H 0.065 0.935 40 H 0.074 0.926 41 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.699 -15.051 -3.499 17.732 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.110 4.110 3 N -0.126 5.126 4 N -0.098 5.098 5 C 0.138 3.862 6 C -0.573 4.573 7 H 0.082 0.918 8 C -0.138 4.138 9 N -0.530 5.530 10 Si 0.733 3.267 11 H -0.196 1.196 12 H -0.206 1.206 13 H -0.206 1.206 14 C -0.041 4.041 15 C -0.274 4.274 16 C -0.015 4.015 17 H 0.084 0.916 18 C -0.153 4.153 19 C -0.072 4.072 20 N -0.382 5.382 21 C -0.150 4.150 22 C -0.148 4.148 23 C -0.094 4.094 24 H 0.086 0.914 25 H 0.090 0.910 26 H 0.082 0.918 27 H 0.068 0.932 28 H 0.069 0.931 29 H 0.077 0.923 30 H 0.099 0.901 31 H 0.076 0.924 32 H 0.044 0.956 33 H 0.087 0.913 34 H 0.151 0.849 35 H 0.149 0.851 36 H 0.079 0.921 37 H 0.077 0.923 38 H 0.083 0.917 39 H 0.084 0.916 40 H 0.093 0.907 41 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -8.749 -12.962 -3.117 15.946 hybrid contribution 1.175 -1.082 0.460 1.662 sum -7.574 -14.044 -2.658 16.176 Atomic orbital electron populations 1.20128 0.88109 1.02186 1.01886 1.21755 0.96043 0.90733 1.02446 1.77427 0.87210 1.22467 1.25494 1.49028 1.05878 1.04115 1.50824 1.19654 0.77897 0.89672 0.98931 1.21347 1.12928 1.31688 0.91353 0.91753 1.24936 0.95722 0.95029 0.98130 1.69931 1.18941 1.33107 1.30976 0.86305 0.78365 0.78337 0.83721 1.19569 1.20638 1.20606 1.20756 0.96208 0.85532 1.01586 1.19374 0.91364 0.94791 1.21866 1.19345 0.93751 0.90475 0.97977 0.91626 1.21792 0.98510 0.95470 0.99571 1.21903 0.91604 0.97200 0.96447 1.58733 1.38769 1.29898 1.10839 1.21687 0.94943 0.98443 0.99918 1.21515 0.97500 0.95451 1.00343 1.20256 0.94196 0.92498 1.02443 0.91433 0.90985 0.91760 0.93209 0.93079 0.92318 0.90085 0.92420 0.95592 0.91298 0.84912 0.85150 0.92095 0.92291 0.91678 0.91631 0.90727 0.89495 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.97 8.68 36.01 0.31 -0.65 16 2 C 0.05 1.05 7.10 -82.52 -0.59 0.47 16 3 N -0.30 -7.16 12.59 33.60 0.42 -6.73 16 4 N -0.32 -7.68 3.58 -58.31 -0.21 -7.89 16 5 C 0.26 6.72 6.04 -5.20 -0.03 6.69 16 6 C -0.53 -14.95 9.39 -34.44 -0.32 -15.27 16 7 H 0.06 1.86 7.81 -52.49 -0.41 1.45 16 8 C 0.07 1.79 5.46 -17.82 -0.10 1.70 16 9 N -0.89 -25.33 13.29 55.43 0.74 -24.60 16 10 Si 0.91 21.29 29.54 -169.99 -5.02 16.27 16 11 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 12 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 13 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 14 C 0.09 1.88 6.73 -82.33 -0.55 1.33 16 15 C -0.26 -4.82 5.43 -105.05 -0.57 -5.39 16 16 C 0.00 0.06 2.45 -91.52 -0.22 -0.16 16 17 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 18 C -0.12 -1.39 4.70 -26.73 -0.13 -1.52 16 19 C 0.06 0.58 6.55 -3.82 -0.03 0.55 16 20 N -0.85 -7.63 9.62 -10.37 -0.10 -7.73 16 21 C -0.11 -1.38 4.70 -26.48 -0.12 -1.51 16 22 C -0.11 -1.47 5.90 -26.49 -0.16 -1.63 16 23 C -0.06 -0.93 5.83 -27.63 -0.16 -1.10 16 24 H 0.07 0.91 8.00 -51.93 -0.42 0.50 16 25 H 0.07 0.94 6.81 -51.93 -0.35 0.58 16 26 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 27 H 0.05 1.29 7.90 -51.93 -0.41 0.88 16 28 H 0.05 1.44 8.14 -51.93 -0.42 1.01 16 29 H 0.27 7.12 8.31 -40.82 -0.34 6.78 16 30 H 0.08 1.02 4.69 -51.93 -0.24 0.78 16 31 H 0.06 0.73 8.12 -51.93 -0.42 0.31 16 32 H 0.03 0.24 6.83 -51.93 -0.35 -0.12 16 33 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 34 H 0.34 2.75 8.99 -39.29 -0.35 2.40 16 35 H 0.34 2.37 9.08 -39.29 -0.36 2.01 16 36 H 0.06 0.77 8.07 -51.93 -0.42 0.35 16 37 H 0.06 0.60 7.12 -51.93 -0.37 0.23 16 38 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 39 H 0.06 0.90 8.11 -51.93 -0.42 0.48 16 40 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 41 H 0.09 1.59 8.14 -51.93 -0.42 1.17 16 LS Contribution 325.74 15.07 4.91 4.91 Total: -1.00 -30.69 325.74 -8.55 -39.25 By element: Atomic # 1 Polarization: 9.65 SS G_CDS: -6.62 Total: 3.03 kcal Atomic # 6 Polarization: -13.83 SS G_CDS: -2.67 Total: -16.49 kcal Atomic # 7 Polarization: -47.81 SS G_CDS: 0.85 Total: -46.96 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.02 Total: 16.27 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -30.69 -8.55 -39.25 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082827434.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.068 kcal (2) G-P(sol) polarization free energy of solvation -30.694 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.374 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.551 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.245 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.823 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds