Wall clock time and date at job start Mon Mar 30 2020 05:05:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.31074 * 125.96155 * 2 1 4 4 N 1.40293 * 108.26980 * 179.73811 * 3 2 1 5 5 C 1.46497 * 126.09326 * 179.91141 * 4 3 2 6 6 C 1.50700 * 109.47117 * 90.01945 * 5 4 3 7 7 H 1.07997 * 120.00139 * 0.02562 * 6 5 4 8 8 C 1.37885 * 120.00044 * 180.02562 * 6 5 4 9 9 N 1.31513 * 119.99660 * 359.97438 * 8 6 5 10 10 Si 1.86795 * 120.00182 * 180.02562 * 8 6 5 11 11 H 1.48504 * 109.47021 * 359.97438 * 10 8 6 12 12 H 1.48502 * 109.47072 * 119.99929 * 10 8 6 13 13 H 1.48494 * 109.47210 * 239.99847 * 10 8 6 14 14 C 1.34324 * 107.81592 * 359.94040 * 4 3 2 15 15 C 1.35752 * 107.84683 * 0.10137 * 14 4 3 16 16 C 1.50838 * 124.10985 * 179.81205 * 15 14 4 17 17 H 1.08992 * 109.68448 * 103.21070 * 16 15 14 18 18 C 1.52998 * 109.71226 * 223.75343 * 16 15 14 19 19 C 1.53002 * 109.47266 * 183.94264 * 18 16 15 20 20 N 1.46902 * 109.47101 * 179.97438 * 19 18 16 21 21 C 1.53367 * 108.37958 * 343.49035 * 16 15 14 22 22 C 1.53110 * 109.50583 * 49.94830 * 21 16 15 23 23 C 1.50832 * 128.03226 * 180.18263 * 14 4 3 24 24 H 1.08995 * 109.47421 * 90.02135 * 1 2 3 25 25 H 1.08997 * 109.46724 * 210.02444 * 1 2 3 26 26 H 1.09004 * 109.46624 * 330.01891 * 1 2 3 27 27 H 1.08995 * 109.47319 * 210.02006 * 5 4 3 28 28 H 1.08998 * 109.46893 * 330.02438 * 5 4 3 29 29 H 0.96996 * 119.99733 * 179.97438 * 9 8 6 30 30 H 1.09003 * 109.47128 * 303.93623 * 18 16 15 31 31 H 1.09000 * 109.47471 * 63.93789 * 18 16 15 32 32 H 1.09003 * 109.46524 * 299.99729 * 19 18 16 33 33 H 1.09000 * 109.47264 * 59.99397 * 19 18 16 34 34 H 1.00895 * 111.00053 * 56.04686 * 20 19 18 35 35 H 1.00901 * 110.99704 * 179.97438 * 20 19 18 36 36 H 1.08994 * 109.46676 * 289.93366 * 21 16 15 37 37 H 1.08999 * 109.46116 * 169.95391 * 21 16 15 38 38 H 1.09003 * 109.46368 * 169.70305 * 22 21 16 39 39 H 1.08992 * 109.46758 * 49.71656 * 22 21 16 40 40 H 1.08998 * 109.67942 * 283.13535 * 23 14 4 41 41 H 1.08999 * 109.67836 * 43.68979 * 23 14 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2768 1.0609 0.0000 4 7 3.6133 0.6346 0.0061 5 6 4.7953 1.5001 0.0063 6 6 5.1963 1.8024 1.4272 7 1 4.6278 1.3906 2.2480 8 6 6.2889 2.6048 1.6793 9 7 6.9814 3.1058 0.6798 10 14 6.7864 2.9789 3.4405 11 1 5.8520 2.2997 4.3738 12 1 8.1680 2.4896 3.6792 13 1 6.7343 4.4453 3.6687 14 6 3.6162 -0.7086 0.0110 15 6 2.3249 -1.1275 0.0059 16 6 1.9057 -2.5764 0.0050 17 1 1.5742 -2.8634 1.0028 18 6 0.7670 -2.7835 -0.9957 19 6 0.2800 -4.2321 -0.9216 20 7 -0.8137 -4.4307 -1.8820 21 6 3.1134 -3.4291 -0.4032 22 6 4.3282 -3.0315 0.4398 23 6 4.8063 -1.6353 0.0223 24 1 -0.3634 -0.0004 -1.0276 25 1 -0.3633 -0.8898 0.5142 26 1 -0.3633 0.8902 0.5136 27 1 5.6158 0.9948 -0.5031 28 1 4.5641 2.4308 -0.5118 29 1 7.7498 3.6705 0.8572 30 1 -0.0560 -2.1109 -0.7540 31 1 1.1255 -2.5717 -2.0030 32 1 1.1030 -4.9048 -1.1634 33 1 -0.0784 -4.4439 0.0857 34 1 -0.5254 -4.1788 -2.8155 35 1 -1.1526 -5.3807 -1.8526 36 1 3.3339 -3.2653 -1.4579 37 1 2.8864 -4.4824 -0.2389 38 1 5.1307 -3.7522 0.2829 39 1 4.0510 -3.0203 1.4938 40 1 5.2457 -1.6805 -0.9742 41 1 5.5471 -1.2727 0.7348 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000082827434.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:05:44 Heat of formation + Delta-G solvation = 21.592980 kcal Electronic energy + Delta-G solvation = -20328.603833 eV Core-core repulsion = 17435.585298 eV Total energy + Delta-G solvation = -2893.018535 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.169 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -42.39662 -38.30277 -36.14440 -35.73276 -34.31520 -32.08844 -30.71488 -30.19251 -28.22092 -27.33837 -24.90356 -23.79290 -23.01884 -21.59691 -20.29172 -19.56713 -18.83799 -17.45833 -16.64543 -16.34764 -16.19317 -15.90991 -15.44028 -15.09103 -14.73328 -14.54626 -14.41658 -14.05569 -13.88205 -13.62104 -13.43350 -13.26623 -13.04816 -12.96332 -12.74051 -12.61854 -12.36506 -12.23749 -11.81160 -11.74970 -11.60267 -11.54963 -11.17665 -10.90627 -10.78340 -9.85670 -9.45127 -8.96632 -8.37566 -6.56470 1.17419 1.32890 1.34689 1.47567 1.91816 1.96052 2.30835 2.91152 3.65475 3.79113 3.86992 3.99101 4.08503 4.21609 4.28593 4.35962 4.46477 4.63396 4.67303 4.69527 4.76590 4.82008 4.83614 4.87135 4.89146 4.95777 5.04284 5.10061 5.16725 5.24291 5.28460 5.42717 5.47626 5.53757 5.61673 5.65789 5.76288 6.06503 6.30774 6.36420 6.59940 6.71310 7.10534 7.15298 8.68631 Molecular weight = 263.17amu Principal moments of inertia in cm(-1) A = 0.029961 B = 0.004985 C = 0.004609 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 934.328820 B = 5615.751769 C = 6073.228903 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 C 0.053 3.947 3 N -0.358 5.358 4 N -0.352 5.352 5 C 0.275 3.725 6 C -0.553 4.553 7 H 0.047 0.953 8 C 0.021 3.979 9 N -0.919 5.919 10 Si 0.975 3.025 11 H -0.274 1.274 12 H -0.264 1.264 13 H -0.273 1.273 14 C 0.071 3.929 15 C -0.255 4.255 16 C 0.006 3.994 17 H 0.075 0.925 18 C -0.108 4.108 19 C 0.066 3.934 20 N -0.862 5.862 21 C -0.107 4.107 22 C -0.103 4.103 23 C -0.057 4.057 24 H 0.085 0.915 25 H 0.097 0.903 26 H 0.063 0.937 27 H 0.042 0.958 28 H 0.017 0.983 29 H 0.274 0.726 30 H 0.075 0.925 31 H 0.048 0.952 32 H 0.038 0.962 33 H 0.072 0.928 34 H 0.343 0.657 35 H 0.349 0.651 36 H 0.058 0.942 37 H 0.093 0.907 38 H 0.094 0.906 39 H 0.061 0.939 40 H 0.082 0.918 41 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.571 -17.691 -2.844 20.314 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.110 4.110 3 N -0.182 5.182 4 N -0.131 5.131 5 C 0.156 3.844 6 C -0.591 4.591 7 H 0.065 0.935 8 C -0.180 4.180 9 N -0.557 5.557 10 Si 0.798 3.202 11 H -0.198 1.198 12 H -0.189 1.189 13 H -0.198 1.198 14 C -0.059 4.059 15 C -0.267 4.267 16 C -0.014 4.014 17 H 0.093 0.907 18 C -0.146 4.146 19 C -0.065 4.065 20 N -0.392 5.392 21 C -0.144 4.144 22 C -0.141 4.141 23 C -0.095 4.095 24 H 0.103 0.897 25 H 0.116 0.884 26 H 0.082 0.918 27 H 0.060 0.940 28 H 0.035 0.965 29 H 0.083 0.917 30 H 0.093 0.907 31 H 0.067 0.933 32 H 0.056 0.944 33 H 0.091 0.909 34 H 0.156 0.844 35 H 0.162 0.838 36 H 0.077 0.923 37 H 0.111 0.889 38 H 0.112 0.888 39 H 0.080 0.920 40 H 0.100 0.900 41 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -9.633 -15.634 -2.477 18.530 hybrid contribution 1.366 -0.279 0.197 1.408 sum -8.268 -15.913 -2.281 18.077 Atomic orbital electron populations 1.20288 0.84782 1.03394 1.03387 1.22620 0.98063 0.90324 1.00005 1.77342 0.87595 1.24984 1.28277 1.48807 1.05398 1.05188 1.53703 1.19113 0.78877 0.88711 0.97709 1.21435 1.13489 1.32588 0.91603 0.93488 1.25796 0.95306 0.94346 1.02540 1.70016 1.19303 1.33289 1.33098 0.85262 0.78463 0.78288 0.78187 1.19822 1.18875 1.19828 1.21556 0.98566 0.84574 1.01231 1.19978 0.90178 0.97049 1.19475 1.19485 0.95269 0.87401 0.99211 0.90699 1.21679 0.97437 0.97214 0.98291 1.21784 0.92254 0.95483 0.96960 1.58691 1.38522 1.30999 1.11024 1.21684 0.93407 0.99931 0.99420 1.21531 0.99039 0.93357 1.00193 1.20407 0.92689 0.94091 1.02358 0.89655 0.88441 0.91836 0.93995 0.96475 0.91666 0.90651 0.93308 0.94407 0.90908 0.84444 0.83785 0.92284 0.88868 0.88770 0.92029 0.89998 0.91774 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.72 8.68 71.24 0.62 -1.10 16 2 C 0.05 2.11 7.10 42.93 0.30 2.42 16 3 N -0.36 -17.72 12.59 -47.62 -0.60 -18.31 16 4 N -0.35 -17.82 3.58 -338.39 -1.21 -19.03 16 5 C 0.28 15.41 6.04 85.63 0.52 15.93 16 6 C -0.55 -32.38 9.39 25.60 0.24 -32.14 16 7 H 0.05 2.85 7.81 -2.91 -0.02 2.83 16 8 C 0.02 1.19 5.46 84.66 0.46 1.65 16 9 N -0.92 -53.48 13.29 21.45 0.28 -53.19 16 10 Si 0.97 44.16 29.54 68.60 2.03 46.19 16 11 H -0.27 -12.40 7.11 99.48 0.71 -11.69 16 12 H -0.26 -11.22 7.11 99.48 0.71 -10.52 16 13 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 14 C 0.07 3.00 6.73 41.64 0.28 3.28 16 15 C -0.26 -9.26 5.43 -20.14 -0.11 -9.37 16 16 C 0.01 0.16 2.45 -11.37 -0.03 0.13 16 17 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 18 C -0.11 -2.29 4.70 30.59 0.14 -2.15 16 19 C 0.07 1.04 6.55 86.30 0.57 1.61 16 20 N -0.86 -12.63 9.62 -186.71 -1.80 -14.43 16 21 C -0.11 -2.28 4.70 30.75 0.14 -2.14 16 22 C -0.10 -2.53 5.90 30.75 0.18 -2.35 16 23 C -0.06 -1.94 5.83 30.01 0.17 -1.76 16 24 H 0.08 2.15 8.00 -2.39 -0.02 2.13 16 25 H 0.10 2.28 6.81 -2.39 -0.02 2.26 16 26 H 0.06 1.82 8.14 -2.38 -0.02 1.80 16 27 H 0.04 2.34 7.90 -2.39 -0.02 2.33 16 28 H 0.02 1.05 8.14 -2.39 -0.02 1.03 16 29 H 0.27 14.77 8.31 -92.71 -0.77 14.00 16 30 H 0.08 1.68 4.69 -2.39 -0.01 1.67 16 31 H 0.05 1.12 8.12 -2.39 -0.02 1.10 16 32 H 0.04 0.52 6.83 -2.39 -0.02 0.51 16 33 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 34 H 0.34 4.60 8.99 -89.70 -0.81 3.79 16 35 H 0.35 3.76 9.08 -89.69 -0.81 2.95 16 36 H 0.06 1.31 8.07 -2.39 -0.02 1.29 16 37 H 0.09 1.43 7.12 -2.39 -0.02 1.41 16 38 H 0.09 1.79 8.14 -2.39 -0.02 1.77 16 39 H 0.06 1.57 8.11 -2.39 -0.02 1.55 16 40 H 0.08 2.62 8.14 -2.39 -0.02 2.60 16 41 H 0.06 2.45 8.14 -2.39 -0.02 2.43 16 Total: -1.00 -69.55 325.74 1.61 -67.94 By element: Atomic # 1 Polarization: 17.40 SS G_CDS: -0.59 Total: 16.81 kcal Atomic # 6 Polarization: -29.48 SS G_CDS: 3.50 Total: -25.98 kcal Atomic # 7 Polarization: -101.64 SS G_CDS: -3.32 Total: -104.96 kcal Atomic # 14 Polarization: 44.16 SS G_CDS: 2.03 Total: 46.19 kcal Total: -69.55 1.61 -67.94 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082827434.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.534 kcal (2) G-P(sol) polarization free energy of solvation -69.553 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.981 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.612 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.941 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.593 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds