Wall clock time and date at job start Mon Mar 30 2020 05:28:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53002 * 109.46789 * 2 1 4 4 H 1.09001 * 109.46967 * 304.99970 * 3 2 1 5 5 N 1.46901 * 109.46991 * 65.00258 * 3 2 1 6 6 C 1.53005 * 109.46793 * 185.00132 * 3 2 1 7 7 C 1.50703 * 109.46605 * 175.00001 * 6 3 2 8 8 N 1.30495 * 125.64878 * 270.03644 * 7 6 3 9 9 C 1.34132 * 109.25474 * 179.97438 * 8 7 6 10 10 C 1.34673 * 108.02171 * 359.73320 * 9 8 7 11 11 N 1.35044 * 125.64636 * 90.00452 * 7 6 3 12 12 C 1.46498 * 126.40359 * 0.03170 * 11 7 6 13 13 C 1.52995 * 109.47450 * 86.31939 * 12 11 7 14 14 C 1.50700 * 115.54953 * 305.47753 * 13 12 11 15 15 H 1.07999 * 120.00353 * 280.87940 * 14 13 12 16 16 C 1.37885 * 120.00170 * 100.60678 * 14 13 12 17 17 N 1.31516 * 120.00108 * 186.48009 * 16 14 13 18 18 Si 1.86793 * 119.99867 * 6.47649 * 16 14 13 19 19 H 1.48499 * 109.47329 * 95.66820 * 18 16 14 20 20 H 1.48496 * 109.47342 * 215.67003 * 18 16 14 21 21 H 1.48499 * 109.47465 * 335.67043 * 18 16 14 22 22 C 1.53003 * 117.51786 * 91.17332 * 13 12 11 23 23 C 1.52999 * 117.50219 * 159.80621 * 13 12 11 24 24 H 1.08994 * 109.47734 * 60.00094 * 1 2 3 25 25 H 1.09007 * 109.46747 * 180.02562 * 1 2 3 26 26 H 1.08997 * 109.47051 * 299.99624 * 1 2 3 27 27 H 1.08997 * 109.47051 * 240.00376 * 2 1 3 28 28 H 1.09000 * 109.47077 * 119.99798 * 2 1 3 29 29 H 1.00901 * 111.00113 * 59.99858 * 5 3 2 30 30 H 1.00906 * 110.99727 * 183.95212 * 5 3 2 31 31 H 1.08994 * 109.47028 * 55.00296 * 6 3 2 32 32 H 1.08994 * 109.47170 * 294.99790 * 6 3 2 33 33 H 1.07997 * 125.98992 * 179.97438 * 9 8 7 34 34 H 1.07994 * 126.59217 * 180.28413 * 10 9 8 35 35 H 1.09007 * 109.46777 * 326.32220 * 12 11 7 36 36 H 1.09000 * 109.47530 * 206.32281 * 12 11 7 37 37 H 0.96993 * 119.99578 * 179.97438 * 17 16 14 38 38 H 1.09003 * 117.49883 * 214.97265 * 22 13 12 39 39 H 1.09003 * 117.49655 * 359.97438 * 22 13 12 40 40 H 1.09001 * 117.49702 * 359.97438 * 23 13 12 41 41 H 1.08996 * 117.49929 * 144.99981 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9815 -0.8418 5 7 1.6513 2.0992 1.2553 6 6 3.5648 1.4444 -0.1258 7 6 4.0568 2.8635 -0.2493 8 7 4.2176 3.5182 -1.3666 9 6 4.6684 4.7520 -1.0954 10 6 4.7861 4.8681 0.2411 11 7 4.4038 3.6684 0.7781 12 6 4.3714 3.3240 2.2016 13 6 5.6846 2.6429 2.5917 14 6 6.0628 1.4398 1.7667 15 1 5.5963 0.4849 1.9588 16 6 7.0005 1.5593 0.7628 17 7 7.2380 0.5446 -0.0394 18 14 7.9333 3.1625 0.5422 19 1 9.2380 3.0770 1.2462 20 1 8.1663 3.4047 -0.9042 21 1 7.1373 4.2805 1.1093 22 6 6.8187 3.5339 3.1025 23 6 6.0598 2.6286 4.0749 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 2.0422 1.6179 2.0513 30 1 1.9203 3.0718 1.2529 31 1 3.8570 0.8801 -1.0113 32 1 4.0029 0.9837 0.7596 33 1 4.8935 5.5192 -1.8214 34 1 5.1202 5.7395 0.7847 35 1 3.5396 2.6458 2.3925 36 1 4.2433 4.2312 2.7921 37 1 7.8973 0.6289 -0.7458 38 1 7.8383 3.2499 2.8419 39 1 6.6294 4.6058 3.1604 40 1 5.3712 3.1049 4.7728 41 1 6.5801 1.7490 4.4540 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000088257123.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:28:23 Heat of formation + Delta-G solvation = 83.509340 kcal Electronic energy + Delta-G solvation = -21484.362922 eV Core-core repulsion = 18594.029281 eV Total energy + Delta-G solvation = -2890.333640 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.169 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.43972 -37.33623 -36.71705 -32.71728 -32.23349 -31.25523 -29.89074 -27.25374 -26.41240 -25.43318 -23.40121 -22.11307 -20.66145 -20.30640 -19.68199 -18.53522 -16.67559 -16.24205 -15.92265 -15.14262 -14.90862 -14.46997 -13.90862 -13.68549 -13.41864 -13.10123 -12.85905 -12.72357 -12.65699 -12.36155 -12.13087 -11.96248 -11.32469 -11.26947 -10.98051 -10.77345 -10.63121 -10.57983 -10.39573 -10.30784 -9.70486 -9.29504 -9.08538 -8.84795 -8.72183 -8.53497 -8.33019 -7.50510 -6.23829 -4.28689 2.80526 3.23597 3.39243 3.42768 3.59263 3.90115 4.36679 4.68468 4.88044 5.00378 5.04859 5.30214 5.40903 5.47191 5.53560 5.57796 5.64441 5.72393 5.87747 5.89837 5.99088 6.04883 6.06235 6.18093 6.23977 6.25184 6.26370 6.45064 6.46424 6.59487 6.62825 6.69287 6.87527 6.92228 7.15717 7.41362 7.49236 7.57586 7.68847 8.02794 8.29257 8.72987 8.91738 9.40005 10.85677 Molecular weight = 263.17amu Principal moments of inertia in cm(-1) A = 0.019106 B = 0.008706 C = 0.008312 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1465.194120 B = 3215.468011 C = 3368.007287 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.114 4.114 3 C 0.095 3.905 4 H 0.077 0.923 5 N -0.842 5.842 6 C -0.073 4.073 7 C 0.253 3.747 8 N -0.508 5.508 9 C -0.043 4.043 10 C -0.066 4.066 11 N -0.427 5.427 12 C 0.132 3.868 13 C -0.015 4.015 14 C -0.500 4.500 15 H 0.081 0.919 16 C 0.095 3.905 17 N -0.879 5.879 18 Si 0.874 3.126 19 H -0.293 1.293 20 H -0.300 1.300 21 H -0.241 1.241 22 C -0.191 4.191 23 C -0.179 4.179 24 H 0.047 0.953 25 H 0.043 0.957 26 H 0.063 0.937 27 H 0.065 0.935 28 H 0.062 0.938 29 H 0.337 0.663 30 H 0.336 0.664 31 H 0.088 0.912 32 H 0.112 0.888 33 H 0.156 0.844 34 H 0.158 0.842 35 H 0.085 0.915 36 H 0.068 0.932 37 H 0.266 0.734 38 H 0.082 0.918 39 H 0.074 0.926 40 H 0.073 0.927 41 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.255 4.340 3.862 10.095 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.152 4.152 3 C -0.017 4.017 4 H 0.096 0.904 5 N -0.373 5.373 6 C -0.113 4.113 7 C -0.009 4.009 8 N -0.227 5.227 9 C -0.192 4.192 10 C -0.200 4.200 11 N -0.107 5.107 12 C 0.009 3.991 13 C -0.017 4.017 14 C -0.537 4.537 15 H 0.099 0.901 16 C -0.111 4.111 17 N -0.514 5.514 18 Si 0.704 3.296 19 H -0.221 1.221 20 H -0.228 1.228 21 H -0.165 1.165 22 C -0.228 4.228 23 C -0.217 4.217 24 H 0.066 0.934 25 H 0.062 0.938 26 H 0.082 0.918 27 H 0.084 0.916 28 H 0.081 0.919 29 H 0.151 0.849 30 H 0.149 0.851 31 H 0.106 0.894 32 H 0.130 0.870 33 H 0.173 0.827 34 H 0.175 0.825 35 H 0.103 0.897 36 H 0.086 0.914 37 H 0.076 0.924 38 H 0.100 0.900 39 H 0.093 0.907 40 H 0.091 0.909 41 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -9.077 3.743 2.852 10.225 hybrid contribution 2.365 1.522 0.684 2.894 sum -6.712 5.265 3.536 9.234 Atomic orbital electron populations 1.21650 0.95673 1.00352 1.02156 1.21498 0.96085 0.95394 1.02177 1.21527 0.92394 0.95172 0.92626 0.90431 1.59103 1.67150 1.06679 1.04348 1.21044 0.95139 0.88473 1.06656 1.22853 1.01366 0.94886 0.81840 1.70180 1.20746 1.05264 1.26516 1.22007 1.07773 0.95959 0.93415 1.22359 1.11042 0.91205 0.95432 1.45127 1.47372 1.10570 1.07622 1.21700 1.00336 0.99088 0.77991 1.19758 0.91216 0.97129 0.93584 1.20005 1.24592 0.93303 1.15791 0.90142 1.24900 0.95955 0.95879 0.94320 1.69850 1.33076 1.31129 1.17325 0.87073 0.79812 0.86373 0.76337 1.22078 1.22788 1.16469 1.22896 0.97954 0.95479 1.06425 1.22988 1.03722 1.01705 0.93244 0.93419 0.93785 0.91805 0.91613 0.91893 0.84887 0.85071 0.89395 0.87029 0.82707 0.82452 0.89727 0.91399 0.92430 0.90016 0.90738 0.90875 0.89089 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.72 9.80 37.16 0.36 -1.36 16 2 C -0.11 -1.57 5.58 -26.73 -0.15 -1.72 16 3 C 0.10 1.48 2.79 -67.71 -0.19 1.29 16 4 H 0.08 1.29 8.14 -51.93 -0.42 0.87 16 5 N -0.84 -11.91 7.91 -4.66 -0.04 -11.94 16 6 C -0.07 -1.39 4.75 -27.88 -0.13 -1.52 16 7 C 0.25 5.23 5.70 -155.42 -0.89 4.34 16 8 N -0.51 -11.25 11.25 -10.81 -0.12 -11.37 16 9 C -0.04 -0.85 11.87 -17.81 -0.21 -1.07 16 10 C -0.07 -1.24 9.54 -16.56 -0.16 -1.40 16 11 N -0.43 -8.13 1.95 -113.90 -0.22 -8.35 16 12 C 0.13 2.28 5.13 -4.05 -0.02 2.26 16 13 C -0.02 -0.31 1.55 -155.66 -0.24 -0.55 16 14 C -0.50 -12.32 6.51 -34.44 -0.22 -12.54 16 15 H 0.08 2.16 7.55 -52.49 -0.40 1.76 16 16 C 0.10 2.56 5.36 -17.82 -0.10 2.46 16 17 N -0.88 -25.39 13.96 55.43 0.77 -24.62 16 18 Si 0.87 21.79 23.44 -169.99 -3.98 17.80 16 19 H -0.29 -7.37 7.09 56.52 0.40 -6.97 16 20 H -0.30 -8.08 7.11 56.52 0.40 -7.68 16 21 H -0.24 -5.46 4.22 56.52 0.24 -5.22 16 22 C -0.19 -3.75 6.59 -26.73 -0.18 -3.92 16 23 C -0.18 -3.18 9.95 -26.73 -0.27 -3.45 16 24 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 25 H 0.04 0.48 8.14 -51.93 -0.42 0.06 16 26 H 0.06 0.80 7.75 -51.93 -0.40 0.40 16 27 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 28 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 29 H 0.34 4.59 7.56 -39.29 -0.30 4.29 16 30 H 0.34 4.97 6.95 -39.29 -0.27 4.70 16 31 H 0.09 1.85 8.14 -51.93 -0.42 1.43 16 32 H 0.11 2.32 5.18 -51.93 -0.27 2.05 16 33 H 0.16 2.65 8.06 -52.49 -0.42 2.22 16 34 H 0.16 2.51 8.06 -52.49 -0.42 2.09 16 35 H 0.08 1.33 4.77 -51.92 -0.25 1.08 16 36 H 0.07 1.02 8.09 -51.93 -0.42 0.60 16 37 H 0.27 7.53 8.31 -40.82 -0.34 7.19 16 38 H 0.08 1.78 5.09 -51.93 -0.26 1.52 16 39 H 0.07 1.33 8.06 -51.93 -0.42 0.91 16 40 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 41 H 0.09 1.68 8.14 -51.93 -0.42 1.25 16 LS Contribution 312.62 15.07 4.71 4.71 Total: -1.00 -28.87 312.62 -7.78 -36.65 By element: Atomic # 1 Polarization: 20.81 SS G_CDS: -6.51 Total: 14.30 kcal Atomic # 6 Polarization: -14.79 SS G_CDS: -2.39 Total: -17.18 kcal Atomic # 7 Polarization: -56.68 SS G_CDS: 0.39 Total: -56.29 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -3.98 Total: 17.80 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -28.87 -7.78 -36.65 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000088257123.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.158 kcal (2) G-P(sol) polarization free energy of solvation -28.868 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 91.290 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.781 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.649 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.509 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds