Wall clock time and date at job start Mon Mar 30 2020 05:28:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53002 * 109.46789 * 2 1 4 4 H 1.09001 * 109.46967 * 304.99970 * 3 2 1 5 5 N 1.46901 * 109.46991 * 65.00258 * 3 2 1 6 6 C 1.53005 * 109.46793 * 185.00132 * 3 2 1 7 7 C 1.50703 * 109.46605 * 175.00001 * 6 3 2 8 8 N 1.30495 * 125.64878 * 270.03644 * 7 6 3 9 9 C 1.34132 * 109.25474 * 179.97438 * 8 7 6 10 10 C 1.34673 * 108.02171 * 359.73320 * 9 8 7 11 11 N 1.35044 * 125.64636 * 90.00452 * 7 6 3 12 12 C 1.46498 * 126.40359 * 0.03170 * 11 7 6 13 13 C 1.52995 * 109.47450 * 86.31939 * 12 11 7 14 14 C 1.50700 * 115.54953 * 305.47753 * 13 12 11 15 15 H 1.07999 * 120.00353 * 280.87940 * 14 13 12 16 16 C 1.37885 * 120.00170 * 100.60678 * 14 13 12 17 17 N 1.31516 * 120.00108 * 186.48009 * 16 14 13 18 18 Si 1.86793 * 119.99867 * 6.47649 * 16 14 13 19 19 H 1.48499 * 109.47329 * 95.66820 * 18 16 14 20 20 H 1.48496 * 109.47342 * 215.67003 * 18 16 14 21 21 H 1.48499 * 109.47465 * 335.67043 * 18 16 14 22 22 C 1.53003 * 117.51786 * 91.17332 * 13 12 11 23 23 C 1.52999 * 117.50219 * 159.80621 * 13 12 11 24 24 H 1.08994 * 109.47734 * 60.00094 * 1 2 3 25 25 H 1.09007 * 109.46747 * 180.02562 * 1 2 3 26 26 H 1.08997 * 109.47051 * 299.99624 * 1 2 3 27 27 H 1.08997 * 109.47051 * 240.00376 * 2 1 3 28 28 H 1.09000 * 109.47077 * 119.99798 * 2 1 3 29 29 H 1.00901 * 111.00113 * 59.99858 * 5 3 2 30 30 H 1.00906 * 110.99727 * 183.95212 * 5 3 2 31 31 H 1.08994 * 109.47028 * 55.00296 * 6 3 2 32 32 H 1.08994 * 109.47170 * 294.99790 * 6 3 2 33 33 H 1.07997 * 125.98992 * 179.97438 * 9 8 7 34 34 H 1.07994 * 126.59217 * 180.28413 * 10 9 8 35 35 H 1.09007 * 109.46777 * 326.32220 * 12 11 7 36 36 H 1.09000 * 109.47530 * 206.32281 * 12 11 7 37 37 H 0.96993 * 119.99578 * 179.97438 * 17 16 14 38 38 H 1.09003 * 117.49883 * 214.97265 * 22 13 12 39 39 H 1.09003 * 117.49655 * 359.97438 * 22 13 12 40 40 H 1.09001 * 117.49702 * 359.97438 * 23 13 12 41 41 H 1.08996 * 117.49929 * 144.99981 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9815 -0.8418 5 7 1.6513 2.0992 1.2553 6 6 3.5648 1.4444 -0.1258 7 6 4.0568 2.8635 -0.2493 8 7 4.2176 3.5182 -1.3666 9 6 4.6684 4.7520 -1.0954 10 6 4.7861 4.8681 0.2411 11 7 4.4038 3.6684 0.7781 12 6 4.3714 3.3240 2.2016 13 6 5.6846 2.6429 2.5917 14 6 6.0628 1.4398 1.7667 15 1 5.5963 0.4849 1.9588 16 6 7.0005 1.5593 0.7628 17 7 7.2380 0.5446 -0.0394 18 14 7.9333 3.1625 0.5422 19 1 9.2380 3.0770 1.2462 20 1 8.1663 3.4047 -0.9042 21 1 7.1373 4.2805 1.1093 22 6 6.8187 3.5339 3.1025 23 6 6.0598 2.6286 4.0749 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 2.0422 1.6179 2.0513 30 1 1.9203 3.0718 1.2529 31 1 3.8570 0.8801 -1.0113 32 1 4.0029 0.9837 0.7596 33 1 4.8935 5.5192 -1.8214 34 1 5.1202 5.7395 0.7847 35 1 3.5396 2.6458 2.3925 36 1 4.2433 4.2312 2.7921 37 1 7.8973 0.6289 -0.7458 38 1 7.8383 3.2499 2.8419 39 1 6.6294 4.6058 3.1604 40 1 5.3712 3.1049 4.7728 41 1 6.5801 1.7490 4.4540 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000088257123.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:28:22 Heat of formation + Delta-G solvation = 64.771160 kcal Electronic energy + Delta-G solvation = -21485.175470 eV Core-core repulsion = 18594.029281 eV Total energy + Delta-G solvation = -2891.146189 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.169 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.93946 -38.89814 -38.00088 -34.36456 -34.09017 -32.48708 -31.23260 -28.68949 -28.04179 -27.16198 -24.65542 -23.61063 -22.12886 -21.59887 -21.28397 -20.13398 -18.41871 -17.81246 -17.18836 -16.90782 -16.41184 -15.76599 -15.31500 -15.21951 -14.89064 -14.69816 -14.39033 -14.25320 -14.06685 -13.78877 -13.61340 -13.30964 -13.09139 -12.78665 -12.48683 -12.29741 -12.14625 -11.99427 -11.70413 -11.64047 -11.49373 -11.02212 -10.78713 -10.64441 -10.32872 -10.12008 -9.68348 -8.97965 -8.32642 -6.34297 1.21798 1.27067 1.37949 1.41403 2.15006 2.32248 2.37137 3.06095 3.19849 3.59074 3.68185 3.93613 4.05351 4.11030 4.20436 4.29813 4.31039 4.36865 4.43772 4.54612 4.62828 4.67314 4.78053 4.79282 4.86499 5.01378 5.05074 5.09262 5.16491 5.22628 5.28246 5.42701 5.44851 5.56726 5.62641 5.68999 6.04693 6.18002 6.24390 6.51937 6.54989 6.71278 7.34915 7.40233 8.79638 Molecular weight = 263.17amu Principal moments of inertia in cm(-1) A = 0.019106 B = 0.008706 C = 0.008312 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1465.194120 B = 3215.468011 C = 3368.007287 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.113 4.113 3 C 0.111 3.889 4 H 0.067 0.933 5 N -0.828 5.828 6 C -0.062 4.062 7 C 0.237 3.763 8 N -0.547 5.547 9 C -0.068 4.068 10 C -0.060 4.060 11 N -0.427 5.427 12 C 0.134 3.866 13 C -0.043 4.043 14 C -0.471 4.471 15 H 0.048 0.952 16 C 0.048 3.952 17 N -0.929 5.929 18 Si 0.911 3.089 19 H -0.301 1.301 20 H -0.336 1.336 21 H -0.197 1.197 22 C -0.199 4.199 23 C -0.150 4.150 24 H 0.047 0.953 25 H 0.058 0.942 26 H 0.064 0.936 27 H 0.059 0.941 28 H 0.062 0.938 29 H 0.343 0.657 30 H 0.336 0.664 31 H 0.055 0.945 32 H 0.092 0.908 33 H 0.174 0.826 34 H 0.195 0.805 35 H 0.098 0.902 36 H 0.110 0.890 37 H 0.255 0.745 38 H 0.055 0.945 39 H 0.106 0.894 40 H 0.118 0.882 41 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.877 6.737 6.542 13.629 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.151 4.151 3 C -0.002 4.002 4 H 0.086 0.914 5 N -0.359 5.359 6 C -0.103 4.103 7 C -0.026 4.026 8 N -0.267 5.267 9 C -0.215 4.215 10 C -0.194 4.194 11 N -0.107 5.107 12 C 0.012 3.988 13 C -0.044 4.044 14 C -0.509 4.509 15 H 0.066 0.934 16 C -0.152 4.152 17 N -0.568 5.568 18 Si 0.742 3.258 19 H -0.229 1.229 20 H -0.267 1.267 21 H -0.119 1.119 22 C -0.236 4.236 23 C -0.188 4.188 24 H 0.066 0.934 25 H 0.077 0.923 26 H 0.083 0.917 27 H 0.078 0.922 28 H 0.081 0.919 29 H 0.158 0.842 30 H 0.149 0.851 31 H 0.073 0.927 32 H 0.111 0.889 33 H 0.191 0.809 34 H 0.212 0.788 35 H 0.116 0.884 36 H 0.128 0.872 37 H 0.064 0.936 38 H 0.074 0.926 39 H 0.125 0.875 40 H 0.136 0.864 41 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -10.720 6.165 5.590 13.571 hybrid contribution 2.866 0.715 -0.096 2.956 sum -7.853 6.880 5.494 11.798 Atomic orbital electron populations 1.21582 0.93889 1.01391 1.02174 1.21496 0.97530 0.94126 1.01930 1.21348 0.89555 0.96244 0.93087 0.91450 1.59084 1.66568 1.06560 1.03703 1.20934 0.97678 0.87728 1.03979 1.22943 1.01999 0.95269 0.82351 1.70125 1.21946 1.06755 1.27850 1.22488 1.08307 0.95731 0.94979 1.22926 1.09465 0.91749 0.95247 1.45268 1.46869 1.10467 1.08082 1.21830 0.98672 1.01066 0.77234 1.19747 0.93190 0.96305 0.95180 1.20177 1.21983 0.94039 1.14653 0.93381 1.25453 0.97453 0.97445 0.94863 1.69992 1.34785 1.33128 1.18891 0.86551 0.79305 0.85990 0.73932 1.22879 1.26660 1.11897 1.22969 0.96180 0.97344 1.07071 1.23017 1.02856 1.00840 0.92067 0.93378 0.92292 0.91714 0.92216 0.91913 0.84243 0.85051 0.92669 0.88936 0.80852 0.78809 0.88447 0.87168 0.93599 0.92635 0.87546 0.86366 0.90288 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.04 9.80 71.98 0.71 -2.34 16 2 C -0.11 -3.08 5.58 30.59 0.17 -2.91 16 3 C 0.11 3.40 2.79 44.92 0.13 3.53 16 4 H 0.07 2.24 8.14 -2.39 -0.02 2.22 16 5 N -0.83 -21.73 7.91 -168.67 -1.33 -23.06 16 6 C -0.06 -2.45 4.75 29.85 0.14 -2.31 16 7 C 0.24 9.72 5.70 138.13 0.79 10.50 16 8 N -0.55 -24.27 11.25 -188.13 -2.12 -26.39 16 9 C -0.07 -2.58 11.87 83.52 0.99 -1.59 16 10 C -0.06 -2.02 9.54 83.09 0.79 -1.23 16 11 N -0.43 -15.10 1.95 -514.28 -1.00 -16.10 16 12 C 0.13 4.04 5.13 86.38 0.44 4.49 16 13 C -0.04 -1.58 1.55 -52.93 -0.08 -1.67 16 14 C -0.47 -23.18 6.51 25.60 0.17 -23.02 16 15 H 0.05 2.65 7.55 -2.91 -0.02 2.63 16 16 C 0.05 2.61 5.36 84.66 0.45 3.06 16 17 N -0.93 -56.46 13.96 21.45 0.30 -56.16 16 18 Si 0.91 44.98 23.44 68.60 1.61 46.59 16 19 H -0.30 -15.00 7.09 99.48 0.71 -14.30 16 20 H -0.34 -18.53 7.11 99.48 0.71 -17.82 16 21 H -0.20 -8.20 4.22 99.48 0.42 -7.78 16 22 C -0.20 -6.92 6.59 30.60 0.20 -6.72 16 23 C -0.15 -4.63 9.95 30.60 0.30 -4.32 16 24 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16 25 H 0.06 1.18 8.14 -2.38 -0.02 1.16 16 26 H 0.06 1.47 7.75 -2.39 -0.02 1.46 16 27 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 28 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 29 H 0.34 8.49 7.56 -89.69 -0.68 7.81 16 30 H 0.34 9.02 6.95 -89.69 -0.62 8.40 16 31 H 0.05 2.49 8.14 -2.39 -0.02 2.47 16 32 H 0.09 3.95 5.18 -2.39 -0.01 3.94 16 33 H 0.17 5.65 8.06 -2.91 -0.02 5.63 16 34 H 0.19 5.03 8.06 -2.91 -0.02 5.00 16 35 H 0.10 2.67 4.77 -2.38 -0.01 2.66 16 36 H 0.11 2.51 8.09 -2.39 -0.02 2.49 16 37 H 0.26 15.40 8.31 -92.71 -0.77 14.63 16 38 H 0.06 2.26 5.09 -2.39 -0.01 2.25 16 39 H 0.11 3.07 8.06 -2.39 -0.02 3.05 16 40 H 0.12 2.68 8.14 -2.39 -0.02 2.66 16 41 H 0.08 2.65 8.14 -2.39 -0.02 2.63 16 Total: -1.00 -66.13 312.62 2.10 -64.04 By element: Atomic # 1 Polarization: 36.15 SS G_CDS: -0.56 Total: 35.60 kcal Atomic # 6 Polarization: -29.71 SS G_CDS: 5.20 Total: -24.51 kcal Atomic # 7 Polarization: -117.55 SS G_CDS: -4.16 Total: -121.71 kcal Atomic # 14 Polarization: 44.98 SS G_CDS: 1.61 Total: 46.59 kcal Total: -66.13 2.10 -64.04 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000088257123.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.806 kcal (2) G-P(sol) polarization free energy of solvation -66.133 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.674 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.098 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.035 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.771 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds