Wall clock time and date at job start Mon Mar 30 2020 05:22:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.50705 * 109.47103 * 2 1 4 4 N 1.30499 * 125.64592 * 270.17744 * 3 2 1 5 5 C 1.34133 * 109.25235 * 180.29266 * 4 3 2 6 6 C 1.34661 * 108.02103 * 359.72331 * 5 4 3 7 7 N 1.35037 * 125.65193 * 90.00373 * 3 2 1 8 8 C 1.46503 * 126.39768 * 359.96946 * 7 3 2 9 9 C 1.52998 * 109.46582 * 84.72121 * 8 7 3 10 10 C 1.53040 * 109.45227 * 64.97021 * 9 8 7 11 11 C 1.53191 * 109.31462 * 181.37857 * 10 9 8 12 12 N 1.46929 * 108.77251 * 305.36323 * 11 10 9 13 13 C 1.36943 * 120.62913 * 233.58698 * 12 11 10 14 14 H 1.08000 * 119.99404 * 27.69419 * 13 12 11 15 15 C 1.38804 * 119.99837 * 207.69755 * 13 12 11 16 16 N 1.31618 * 120.00488 * 17.35070 * 15 13 12 17 17 Si 1.86806 * 119.99788 * 197.35548 * 15 13 12 18 18 H 1.48500 * 109.46986 * 59.99796 * 17 15 13 19 19 H 1.48495 * 109.47095 * 180.02562 * 17 15 13 20 20 H 1.48497 * 109.46875 * 300.00013 * 17 15 13 21 21 C 1.46924 * 118.74006 * 53.60682 * 12 11 10 22 22 C 1.53048 * 109.45532 * 185.02976 * 9 8 7 23 23 H 1.08998 * 109.47659 * 180.02562 * 1 2 3 24 24 H 1.09004 * 109.47385 * 300.00042 * 1 2 3 25 25 H 1.08998 * 109.47355 * 60.00112 * 1 2 3 26 26 H 1.09004 * 109.47385 * 239.99958 * 2 1 3 27 27 H 1.08998 * 109.47355 * 119.99888 * 2 1 3 28 28 H 1.08005 * 125.98582 * 179.72095 * 5 4 3 29 29 H 1.08005 * 126.59285 * 179.97438 * 6 5 4 30 30 H 1.08996 * 109.46989 * 324.71919 * 8 7 3 31 31 H 1.09004 * 109.46936 * 204.72220 * 8 7 3 32 32 H 1.09003 * 109.46286 * 304.99580 * 9 8 7 33 33 H 1.09004 * 109.49060 * 301.32691 * 10 9 8 34 34 H 1.08994 * 109.49889 * 61.42294 * 10 9 8 35 35 H 1.08996 * 109.58661 * 185.57370 * 11 10 9 36 36 H 1.08999 * 109.58740 * 65.14438 * 11 10 9 37 37 H 0.97003 * 120.00197 * 179.97438 * 16 15 13 38 38 H 1.09004 * 109.58430 * 186.60482 * 21 12 11 39 39 H 1.08998 * 109.70564 * 66.25092 * 21 12 11 40 40 H 1.09005 * 109.49661 * 298.57714 * 22 9 8 41 41 H 1.08999 * 109.49769 * 58.67499 * 22 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0322 1.4209 0.0000 4 7 2.2827 2.1390 -1.0605 5 6 2.7188 3.3496 -0.6819 6 6 2.7336 3.3850 0.6641 7 7 2.2947 2.1629 1.0973 8 6 2.1437 1.7374 2.4910 9 6 3.4030 0.9909 2.9355 10 6 4.5936 1.9525 2.9315 11 6 5.8590 1.1939 3.3437 12 7 5.6173 0.5382 4.6362 13 6 6.4679 0.7392 5.6904 14 1 7.0274 1.6599 5.7647 15 6 6.6110 -0.2405 6.6632 16 7 6.2169 -1.4725 6.4197 17 14 7.3628 0.1896 8.3184 18 1 6.5399 1.2342 8.9793 19 1 7.4038 -1.0237 9.1736 20 1 8.7427 0.7000 8.1175 21 6 4.4459 -0.3376 4.7759 22 6 3.1963 0.4382 4.3476 23 1 -0.3634 -1.0276 0.0005 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 3.0075 4.1549 -1.3413 29 1 3.0344 4.2174 1.2831 30 1 1.2804 1.0776 2.5779 31 1 1.9974 2.6125 3.1242 32 1 3.5988 0.1676 2.2484 33 1 4.7257 2.3636 1.9307 34 1 4.4092 2.7628 3.6368 35 1 6.6897 1.8931 3.4384 36 1 6.0957 0.4418 2.5911 37 1 6.3172 -2.1572 7.0995 38 1 4.3443 -0.6488 5.8156 39 1 4.5659 -1.2159 4.1417 40 1 3.0250 1.2628 5.0396 41 1 2.3339 -0.2285 4.3547 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000090470460.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:22:41 Heat of formation + Delta-G solvation = 63.554197 kcal Electronic energy + Delta-G solvation = -20444.878676 eV Core-core repulsion = 17553.679716 eV Total energy + Delta-G solvation = -2891.198960 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.169 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.03602 -37.93405 -34.72211 -33.77851 -32.49046 -30.73086 -29.72706 -28.58291 -26.91735 -24.36724 -23.67472 -22.28332 -21.47369 -21.19327 -19.36900 -19.13841 -16.90361 -16.74986 -15.43302 -15.02656 -14.81594 -14.31943 -14.00767 -13.62696 -13.58557 -13.44883 -13.38748 -13.16375 -12.70275 -12.33495 -12.23446 -11.88819 -11.59353 -11.41142 -11.20506 -11.04804 -10.75117 -10.69885 -10.37989 -10.28533 -9.98540 -9.83737 -9.72853 -9.59040 -9.24316 -8.50700 -8.22161 -6.71965 -5.82983 -3.24989 2.18660 2.93290 3.26619 3.35465 3.41371 3.42437 4.45463 4.46339 4.69618 4.83540 5.01191 5.11062 5.20726 5.22429 5.31733 5.36434 5.44252 5.54005 5.60085 5.65670 5.72506 5.76342 5.92631 5.98627 6.03224 6.08644 6.24134 6.39576 6.45769 6.51110 6.56726 6.66722 6.75448 6.88838 6.92851 7.28738 7.33354 7.58839 7.75303 8.24154 8.40898 9.17446 9.80802 10.37567 11.25696 Molecular weight = 263.17amu Principal moments of inertia in cm(-1) A = 0.035166 B = 0.004614 C = 0.004311 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 796.026606 B = 6067.220212 C = 6493.172510 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.041 4.041 3 C 0.207 3.793 4 N -0.497 5.497 5 C -0.038 4.038 6 C -0.052 4.052 7 N -0.443 5.443 8 C 0.104 3.896 9 C -0.092 4.092 10 C -0.127 4.127 11 C 0.147 3.853 12 N -0.592 5.592 13 C -0.254 4.254 14 H 0.065 0.935 15 C 0.003 3.997 16 N -0.904 5.904 17 Si 0.902 3.098 18 H -0.284 1.284 19 H -0.290 1.290 20 H -0.282 1.282 21 C 0.172 3.828 22 C -0.133 4.133 23 H 0.064 0.936 24 H 0.051 0.949 25 H 0.060 0.940 26 H 0.092 0.908 27 H 0.080 0.920 28 H 0.165 0.835 29 H 0.170 0.830 30 H 0.087 0.913 31 H 0.089 0.911 32 H 0.069 0.931 33 H 0.051 0.949 34 H 0.057 0.943 35 H 0.053 0.947 36 H 0.015 0.985 37 H 0.255 0.745 38 H 0.089 0.911 39 H 0.017 0.983 40 H 0.057 0.943 41 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.820 5.364 -8.900 15.002 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.080 4.080 3 C -0.055 4.055 4 N -0.216 5.216 5 C -0.186 4.186 6 C -0.186 4.186 7 N -0.125 5.125 8 C -0.018 4.018 9 C -0.111 4.111 10 C -0.166 4.166 11 C 0.020 3.980 12 N -0.314 5.314 13 C -0.384 4.384 14 H 0.082 0.918 15 C -0.196 4.196 16 N -0.548 5.548 17 Si 0.732 3.268 18 H -0.210 1.210 19 H -0.216 1.216 20 H -0.209 1.209 21 C 0.046 3.954 22 C -0.173 4.173 23 H 0.083 0.917 24 H 0.070 0.930 25 H 0.079 0.921 26 H 0.111 0.889 27 H 0.099 0.901 28 H 0.182 0.818 29 H 0.187 0.813 30 H 0.105 0.895 31 H 0.107 0.893 32 H 0.087 0.913 33 H 0.070 0.930 34 H 0.076 0.924 35 H 0.072 0.928 36 H 0.033 0.967 37 H 0.064 0.936 38 H 0.107 0.893 39 H 0.036 0.964 40 H 0.076 0.924 41 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -10.901 4.917 -9.432 15.231 hybrid contribution 0.601 0.622 1.750 1.952 sum -10.300 5.539 -7.683 13.993 Atomic orbital electron populations 1.21719 0.94238 1.02094 1.02204 1.19968 0.96136 0.87709 1.04194 1.23158 1.04350 0.96492 0.81521 1.70190 1.18659 1.04255 1.28498 1.22190 1.07203 0.96424 0.92763 1.22654 1.09008 0.90219 0.96701 1.45463 1.47840 1.11518 1.07642 1.22207 1.00197 1.00910 0.78502 1.21446 0.93173 0.97959 0.98525 1.22059 0.96736 0.98043 0.99762 1.20858 0.93966 0.94622 0.88510 1.44052 1.25864 1.54255 1.07268 1.19151 1.20183 0.98938 1.00083 0.91756 1.25025 0.99947 0.94556 1.00028 1.70020 1.51261 1.00148 1.33362 0.86372 0.79184 0.77186 0.84060 1.21040 1.21588 1.20866 1.20747 0.82744 0.90126 1.01777 1.22215 1.00686 1.00383 0.94023 0.91694 0.93000 0.92086 0.88950 0.90103 0.81775 0.81317 0.89471 0.89252 0.91257 0.93050 0.92430 0.92843 0.96667 0.93550 0.89269 0.96449 0.92388 0.93066 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.37 9.89 37.15 0.37 -1.00 16 2 C -0.04 -0.47 6.09 -27.89 -0.17 -0.64 16 3 C 0.21 2.93 7.16 -155.42 -1.11 1.82 16 4 N -0.50 -7.79 11.25 -10.81 -0.12 -7.91 16 5 C -0.04 -0.52 11.87 -17.81 -0.21 -0.73 16 6 C -0.05 -0.67 10.21 -16.56 -0.17 -0.84 16 7 N -0.44 -5.92 2.47 -113.90 -0.28 -6.21 16 8 C 0.10 1.29 5.08 -4.04 -0.02 1.26 16 9 C -0.09 -1.41 2.36 -90.58 -0.21 -1.62 16 10 C -0.13 -2.14 5.14 -26.61 -0.14 -2.28 16 11 C 0.15 3.08 6.52 -3.71 -0.02 3.06 16 12 N -0.59 -14.54 3.00 -172.32 -0.52 -15.06 16 13 C -0.25 -6.89 9.58 -15.06 -0.14 -7.04 16 14 H 0.06 1.72 7.89 -52.49 -0.41 1.31 16 15 C 0.00 0.08 4.91 -17.43 -0.09 0.00 16 16 N -0.90 -25.85 11.19 55.49 0.62 -25.23 16 17 Si 0.90 21.39 29.59 -169.99 -5.03 16.36 16 18 H -0.28 -6.65 7.11 56.52 0.40 -6.24 16 19 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 20 H -0.28 -6.65 7.11 56.52 0.40 -6.24 16 21 C 0.17 3.93 5.31 -3.71 -0.02 3.92 16 22 C -0.13 -2.30 5.36 -26.61 -0.14 -2.44 16 23 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 24 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 25 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 26 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 27 H 0.08 0.89 7.41 -51.93 -0.38 0.50 16 28 H 0.16 1.84 8.06 -52.48 -0.42 1.41 16 29 H 0.17 1.78 8.06 -52.48 -0.42 1.36 16 30 H 0.09 0.95 7.94 -51.93 -0.41 0.53 16 31 H 0.09 1.03 8.14 -51.93 -0.42 0.60 16 32 H 0.07 1.15 7.71 -51.93 -0.40 0.75 16 33 H 0.05 0.83 6.67 -51.93 -0.35 0.48 16 34 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 35 H 0.05 1.11 7.93 -51.93 -0.41 0.70 16 36 H 0.02 0.34 8.14 -51.93 -0.42 -0.09 16 37 H 0.25 7.05 8.31 -40.82 -0.34 6.71 16 38 H 0.09 2.30 6.04 -51.93 -0.31 1.98 16 39 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 40 H 0.06 1.02 8.14 -51.93 -0.42 0.59 16 41 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 LS Contribution 325.70 15.07 4.91 4.91 Total: -1.00 -30.60 325.70 -9.39 -39.99 By element: Atomic # 1 Polarization: 6.56 SS G_CDS: -6.89 Total: -0.33 kcal Atomic # 6 Polarization: -4.45 SS G_CDS: -2.08 Total: -6.54 kcal Atomic # 7 Polarization: -54.10 SS G_CDS: -0.30 Total: -54.40 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.03 Total: 16.36 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -30.60 -9.39 -39.99 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000090470460.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.548 kcal (2) G-P(sol) polarization free energy of solvation -30.601 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.947 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.393 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.994 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.554 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds