Wall clock time and date at job start Mon Mar 30 2020 05:22:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.50705 * 109.47103 * 2 1 4 4 N 1.30499 * 125.64592 * 270.17744 * 3 2 1 5 5 C 1.34133 * 109.25235 * 180.29266 * 4 3 2 6 6 C 1.34661 * 108.02103 * 359.72331 * 5 4 3 7 7 N 1.35037 * 125.65193 * 90.00373 * 3 2 1 8 8 C 1.46503 * 126.39768 * 359.96946 * 7 3 2 9 9 C 1.52998 * 109.46582 * 84.72121 * 8 7 3 10 10 C 1.53040 * 109.45227 * 64.97021 * 9 8 7 11 11 C 1.53191 * 109.31462 * 181.37857 * 10 9 8 12 12 N 1.46929 * 108.77251 * 305.36323 * 11 10 9 13 13 C 1.36943 * 120.62913 * 233.58698 * 12 11 10 14 14 H 1.08000 * 119.99404 * 27.69419 * 13 12 11 15 15 C 1.38804 * 119.99837 * 207.69755 * 13 12 11 16 16 N 1.31618 * 120.00488 * 17.35070 * 15 13 12 17 17 Si 1.86806 * 119.99788 * 197.35548 * 15 13 12 18 18 H 1.48500 * 109.46986 * 59.99796 * 17 15 13 19 19 H 1.48495 * 109.47095 * 180.02562 * 17 15 13 20 20 H 1.48497 * 109.46875 * 300.00013 * 17 15 13 21 21 C 1.46924 * 118.74006 * 53.60682 * 12 11 10 22 22 C 1.53048 * 109.45532 * 185.02976 * 9 8 7 23 23 H 1.08998 * 109.47659 * 180.02562 * 1 2 3 24 24 H 1.09004 * 109.47385 * 300.00042 * 1 2 3 25 25 H 1.08998 * 109.47355 * 60.00112 * 1 2 3 26 26 H 1.09004 * 109.47385 * 239.99958 * 2 1 3 27 27 H 1.08998 * 109.47355 * 119.99888 * 2 1 3 28 28 H 1.08005 * 125.98582 * 179.72095 * 5 4 3 29 29 H 1.08005 * 126.59285 * 179.97438 * 6 5 4 30 30 H 1.08996 * 109.46989 * 324.71919 * 8 7 3 31 31 H 1.09004 * 109.46936 * 204.72220 * 8 7 3 32 32 H 1.09003 * 109.46286 * 304.99580 * 9 8 7 33 33 H 1.09004 * 109.49060 * 301.32691 * 10 9 8 34 34 H 1.08994 * 109.49889 * 61.42294 * 10 9 8 35 35 H 1.08996 * 109.58661 * 185.57370 * 11 10 9 36 36 H 1.08999 * 109.58740 * 65.14438 * 11 10 9 37 37 H 0.97003 * 120.00197 * 179.97438 * 16 15 13 38 38 H 1.09004 * 109.58430 * 186.60482 * 21 12 11 39 39 H 1.08998 * 109.70564 * 66.25092 * 21 12 11 40 40 H 1.09005 * 109.49661 * 298.57714 * 22 9 8 41 41 H 1.08999 * 109.49769 * 58.67499 * 22 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0322 1.4209 0.0000 4 7 2.2827 2.1390 -1.0605 5 6 2.7188 3.3496 -0.6819 6 6 2.7336 3.3850 0.6641 7 7 2.2947 2.1629 1.0973 8 6 2.1437 1.7374 2.4910 9 6 3.4030 0.9909 2.9355 10 6 4.5936 1.9525 2.9315 11 6 5.8590 1.1939 3.3437 12 7 5.6173 0.5382 4.6362 13 6 6.4679 0.7392 5.6904 14 1 7.0274 1.6599 5.7647 15 6 6.6110 -0.2405 6.6632 16 7 6.2169 -1.4725 6.4197 17 14 7.3628 0.1896 8.3184 18 1 6.5399 1.2342 8.9793 19 1 7.4038 -1.0237 9.1736 20 1 8.7427 0.7000 8.1175 21 6 4.4459 -0.3376 4.7759 22 6 3.1963 0.4382 4.3476 23 1 -0.3634 -1.0276 0.0005 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 3.0075 4.1549 -1.3413 29 1 3.0344 4.2174 1.2831 30 1 1.2804 1.0776 2.5779 31 1 1.9974 2.6125 3.1242 32 1 3.5988 0.1676 2.2484 33 1 4.7257 2.3636 1.9307 34 1 4.4092 2.7628 3.6368 35 1 6.6897 1.8931 3.4384 36 1 6.0957 0.4418 2.5911 37 1 6.3172 -2.1572 7.0995 38 1 4.3443 -0.6488 5.8156 39 1 4.5659 -1.2159 4.1417 40 1 3.0250 1.2628 5.0396 41 1 2.3339 -0.2285 4.3547 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000090470460.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:22:40 Heat of formation + Delta-G solvation = 47.538948 kcal Electronic energy + Delta-G solvation = -20445.573150 eV Core-core repulsion = 17553.679716 eV Total energy + Delta-G solvation = -2891.893434 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.169 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -43.04460 -39.45603 -36.20235 -34.65544 -34.06835 -32.35991 -31.38571 -29.54939 -28.37473 -25.98719 -24.61818 -23.86185 -23.00536 -22.21785 -20.75857 -20.32231 -18.74904 -17.80798 -16.89641 -16.45760 -16.01806 -15.57733 -15.35395 -15.28557 -14.90682 -14.63700 -14.51100 -14.39345 -14.06868 -13.81400 -13.29272 -13.16627 -12.98938 -12.81673 -12.56026 -12.41792 -12.32738 -12.07652 -11.99241 -11.90543 -11.75374 -11.30246 -11.18193 -10.87226 -10.55398 -10.40086 -9.21851 -8.70355 -7.89121 -5.34374 1.18531 1.46867 1.48297 1.55588 1.95164 2.24232 2.50400 3.25292 3.55139 3.66360 3.66587 3.84835 3.90100 4.06813 4.21481 4.29821 4.40442 4.45050 4.50061 4.54277 4.60678 4.70743 4.76408 4.81125 4.89867 4.95701 5.02200 5.08625 5.12487 5.19702 5.23281 5.30907 5.34738 5.47779 5.52557 5.63505 5.75791 5.92761 6.34631 6.37508 7.13918 7.23115 7.84714 8.36154 9.17013 Molecular weight = 263.17amu Principal moments of inertia in cm(-1) A = 0.035166 B = 0.004614 C = 0.004311 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 796.026606 B = 6067.220212 C = 6493.172510 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.043 4.043 3 C 0.197 3.803 4 N -0.532 5.532 5 C -0.057 4.057 6 C -0.052 4.052 7 N -0.447 5.447 8 C 0.113 3.887 9 C -0.082 4.082 10 C -0.111 4.111 11 C 0.142 3.858 12 N -0.609 5.609 13 C -0.267 4.267 14 H 0.064 0.936 15 C -0.048 4.048 16 N -0.935 5.935 17 Si 0.966 3.034 18 H -0.276 1.276 19 H -0.293 1.293 20 H -0.278 1.278 21 C 0.175 3.825 22 C -0.118 4.118 23 H 0.083 0.917 24 H 0.055 0.945 25 H 0.051 0.949 26 H 0.090 0.910 27 H 0.085 0.915 28 H 0.181 0.819 29 H 0.194 0.806 30 H 0.109 0.891 31 H 0.108 0.892 32 H 0.057 0.943 33 H 0.063 0.937 34 H 0.063 0.937 35 H 0.048 0.952 36 H 0.001 0.999 37 H 0.251 0.749 38 H 0.056 0.944 39 H -0.008 1.008 40 H 0.061 0.939 41 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.154 6.665 -8.678 16.354 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.082 4.082 3 C -0.066 4.066 4 N -0.251 5.251 5 C -0.204 4.204 6 C -0.185 4.185 7 N -0.128 5.128 8 C -0.008 4.008 9 C -0.102 4.102 10 C -0.150 4.150 11 C 0.016 3.984 12 N -0.333 5.333 13 C -0.397 4.397 14 H 0.082 0.918 15 C -0.243 4.243 16 N -0.581 5.581 17 Si 0.794 3.206 18 H -0.202 1.202 19 H -0.219 1.219 20 H -0.204 1.204 21 C 0.049 3.951 22 C -0.157 4.157 23 H 0.102 0.898 24 H 0.074 0.926 25 H 0.070 0.930 26 H 0.108 0.892 27 H 0.104 0.896 28 H 0.199 0.801 29 H 0.211 0.789 30 H 0.127 0.873 31 H 0.126 0.874 32 H 0.075 0.925 33 H 0.081 0.919 34 H 0.082 0.918 35 H 0.067 0.933 36 H 0.019 0.981 37 H 0.060 0.940 38 H 0.074 0.926 39 H 0.010 0.990 40 H 0.080 0.920 41 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -12.243 6.247 -9.234 16.559 hybrid contribution 1.085 0.203 1.602 1.946 sum -11.158 6.450 -7.632 14.978 Atomic orbital electron populations 1.21670 0.92722 1.03232 1.01899 1.20081 0.97389 0.86384 1.04310 1.23626 1.04088 0.97321 0.81548 1.70174 1.19867 1.05380 1.29707 1.22612 1.07505 0.96500 0.93803 1.23077 1.08051 0.90620 0.96755 1.45539 1.47865 1.11632 1.07745 1.22126 0.98808 1.01724 0.78182 1.21279 0.94272 0.97540 0.97078 1.21860 0.95085 0.97803 1.00250 1.20984 0.96285 0.94304 0.86781 1.44325 1.26298 1.54632 1.08019 1.19478 1.20332 0.98854 1.01026 0.91818 1.25763 1.00961 0.94409 1.03170 1.70178 1.52814 1.00975 1.34100 0.85360 0.78531 0.76752 0.79921 1.20174 1.21945 1.20382 1.20610 0.84934 0.90135 0.99405 1.21970 0.98456 1.00244 0.95053 0.89850 0.92603 0.93022 0.89177 0.89643 0.80145 0.78899 0.87277 0.87422 0.92459 0.91889 0.91844 0.93293 0.98098 0.94035 0.92576 0.99017 0.92044 0.90218 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.29 9.89 71.98 0.71 -1.58 16 2 C -0.04 -0.89 6.09 29.85 0.18 -0.71 16 3 C 0.20 5.20 7.16 138.13 0.99 6.19 16 4 N -0.53 -16.03 11.25 -188.13 -2.12 -18.14 16 5 C -0.06 -1.48 11.87 83.52 0.99 -0.48 16 6 C -0.05 -1.19 10.21 83.08 0.85 -0.34 16 7 N -0.45 -10.67 2.47 -514.28 -1.27 -11.94 16 8 C 0.11 2.38 5.08 86.38 0.44 2.82 16 9 C -0.08 -2.33 2.36 -10.77 -0.03 -2.36 16 10 C -0.11 -3.53 5.14 30.67 0.16 -3.37 16 11 C 0.14 5.95 6.52 86.36 0.56 6.51 16 12 N -0.61 -30.20 3.00 -699.10 -2.09 -32.30 16 13 C -0.27 -14.60 9.58 84.03 0.81 -13.79 16 14 H 0.06 3.41 7.89 -2.91 -0.02 3.39 16 15 C -0.05 -2.63 4.91 84.86 0.42 -2.21 16 16 N -0.93 -54.74 11.19 21.65 0.24 -54.50 16 17 Si 0.97 44.24 29.59 68.60 2.03 46.27 16 18 H -0.28 -12.17 7.11 99.48 0.71 -11.46 16 19 H -0.29 -13.47 7.11 99.48 0.71 -12.77 16 20 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 21 C 0.17 8.08 5.31 86.36 0.46 8.54 16 22 C -0.12 -3.83 5.36 30.67 0.16 -3.66 16 23 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 24 H 0.05 0.89 8.14 -2.38 -0.02 0.87 16 25 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 26 H 0.09 1.90 8.14 -2.38 -0.02 1.88 16 27 H 0.09 1.69 7.41 -2.39 -0.02 1.67 16 28 H 0.18 3.76 8.06 -2.91 -0.02 3.73 16 29 H 0.19 3.36 8.06 -2.91 -0.02 3.33 16 30 H 0.11 1.88 7.94 -2.39 -0.02 1.86 16 31 H 0.11 1.95 8.14 -2.38 -0.02 1.94 16 32 H 0.06 1.80 7.71 -2.39 -0.02 1.78 16 33 H 0.06 1.88 6.67 -2.38 -0.02 1.86 16 34 H 0.06 1.97 8.14 -2.39 -0.02 1.95 16 35 H 0.05 2.04 7.93 -2.39 -0.02 2.02 16 36 H 0.00 0.05 8.14 -2.39 -0.02 0.03 16 37 H 0.25 14.23 8.31 -92.71 -0.77 13.46 16 38 H 0.06 2.96 6.04 -2.38 -0.01 2.94 16 39 H -0.01 -0.41 8.14 -2.39 -0.02 -0.43 16 40 H 0.06 1.99 8.14 -2.38 -0.02 1.97 16 41 H 0.08 2.15 8.14 -2.39 -0.02 2.13 16 Total: -1.00 -67.09 325.70 4.47 -62.62 By element: Atomic # 1 Polarization: 11.46 SS G_CDS: 0.98 Total: 12.44 kcal Atomic # 6 Polarization: -11.16 SS G_CDS: 6.70 Total: -4.46 kcal Atomic # 7 Polarization: -111.64 SS G_CDS: -5.24 Total: -116.88 kcal Atomic # 14 Polarization: 44.24 SS G_CDS: 2.03 Total: 46.27 kcal Total: -67.09 4.47 -62.62 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000090470460.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.160 kcal (2) G-P(sol) polarization free energy of solvation -67.094 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.066 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.473 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.621 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.539 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds