Wall clock time and date at job start Mon Mar 30 2020 04:27:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.34777 * 120.00009 * 2 1 4 4 O 1.21279 * 120.00275 * 0.02562 * 3 2 1 5 5 C 1.50699 * 119.99959 * 180.02562 * 3 2 1 6 6 N 1.46506 * 109.47225 * 180.02562 * 5 3 2 7 7 C 1.46493 * 119.99675 * 269.99589 * 6 5 3 8 8 C 1.39846 * 119.99957 * 89.99610 * 6 5 3 9 9 C 1.39608 * 119.84184 * 0.02562 * 8 6 5 10 10 C 1.38058 * 120.55013 * 180.02562 * 9 8 6 11 11 C 1.38733 * 120.21785 * 0.25424 * 10 9 8 12 12 N 1.38872 * 120.16201 * 179.74774 * 11 10 9 13 13 C 1.41556 * 119.67562 * 359.52232 * 11 10 9 14 14 C 1.41039 * 120.26894 * 180.20681 * 13 11 10 15 15 H 1.08001 * 119.99638 * 333.96246 * 14 13 11 16 16 C 1.39883 * 120.00195 * 153.96000 * 14 13 11 17 17 N 1.30899 * 119.99956 * 343.94081 * 16 14 13 18 18 Si 1.86796 * 120.00037 * 163.93834 * 16 14 13 19 19 H 1.48500 * 109.47275 * 59.99945 * 18 16 14 20 20 H 1.48499 * 109.47354 * 180.02562 * 18 16 14 21 21 H 1.48504 * 109.47033 * 300.00132 * 18 16 14 22 22 C 1.38007 * 119.84226 * 180.02562 * 8 6 5 23 23 H 1.09001 * 109.47061 * 300.00100 * 1 2 3 24 24 H 1.09002 * 109.47299 * 59.99850 * 1 2 3 25 25 H 1.08995 * 109.47240 * 179.97438 * 1 2 3 26 26 H 0.96996 * 119.99812 * 180.02562 * 2 1 3 27 27 H 1.09001 * 109.47499 * 59.99555 * 5 3 2 28 28 H 1.09002 * 109.46909 * 299.99774 * 5 3 2 29 29 H 1.08993 * 109.47344 * 269.99960 * 7 6 5 30 30 H 1.09000 * 109.47274 * 30.00291 * 7 6 5 31 31 H 1.09005 * 109.46775 * 149.99766 * 7 6 5 32 32 H 1.07997 * 119.72520 * 359.97438 * 9 8 6 33 33 H 1.08001 * 119.88677 * 179.97438 * 10 9 8 34 34 H 0.96997 * 119.99642 * 353.92268 * 12 11 10 35 35 H 0.96998 * 120.00405 * 173.92254 * 12 11 10 36 36 H 0.97003 * 120.00018 * 185.03814 * 17 16 14 37 37 H 1.08004 * 120.10942 * 359.97438 * 22 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 1.5325 2.2175 0.0005 5 6 3.6459 1.1672 -0.0006 6 7 4.1343 2.5484 0.0002 7 6 4.3780 3.2398 -1.2682 8 6 4.3677 3.2069 1.2116 9 6 4.1348 2.5447 2.4184 10 6 4.3599 3.1809 3.6228 11 6 4.8163 4.4908 3.6459 12 7 5.0373 5.1314 4.8581 13 6 5.0601 5.1696 2.4279 14 6 5.5284 6.4999 2.4368 15 1 5.3156 7.1416 3.2791 16 6 6.2685 6.9883 1.3549 17 7 6.7948 6.1555 0.4929 18 14 6.5055 8.8286 1.1401 19 1 7.2026 9.3801 2.3297 20 1 7.3205 9.0844 -0.0746 21 1 5.1812 9.4846 0.9942 22 6 4.8273 4.5082 1.2085 23 1 -0.3633 0.5139 0.8900 24 1 -0.3634 0.5139 -0.8900 25 1 -0.3633 -1.0276 -0.0005 26 1 1.9499 -0.8400 -0.0004 27 1 4.0089 0.6535 -0.8908 28 1 4.0095 0.6532 0.8892 29 1 5.4073 3.0687 -1.5833 30 1 3.6969 2.8562 -2.0278 31 1 4.2110 4.3089 -1.1371 32 1 3.7748 1.5265 2.4097 33 1 4.1757 2.6585 4.5500 34 1 4.7899 4.6960 5.6888 35 1 5.4390 6.0141 4.8740 36 1 7.3683 6.4885 -0.2151 37 1 5.0067 5.0172 0.2730 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000127221834.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:27:38 Heat of formation + Delta-G solvation = 4.279864 kcal Electronic energy + Delta-G solvation = -19893.650759 eV Core-core repulsion = 16864.048377 eV Total energy + Delta-G solvation = -3029.602383 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.137 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.42218 -37.84867 -35.60716 -34.27697 -33.42533 -32.02296 -29.75686 -28.87775 -26.97685 -26.35925 -24.75659 -23.14458 -20.92182 -20.37161 -19.17328 -17.33962 -16.92140 -16.14125 -15.76579 -15.38974 -15.14009 -14.65260 -14.49559 -13.92546 -13.83037 -13.18628 -12.70625 -12.56324 -12.49199 -12.27519 -11.94323 -11.71939 -11.45462 -11.19075 -11.13788 -11.05072 -10.85625 -10.33936 -9.89418 -9.78585 -9.38947 -9.18564 -9.00257 -8.96938 -7.58756 -7.16798 -6.54446 -5.48772 -4.01691 2.95466 3.00710 3.15657 3.19109 3.29242 3.36331 3.58962 4.07018 4.17727 4.85045 5.03911 5.31551 5.41422 5.46514 5.53830 5.64910 5.80545 5.85653 5.94649 6.33147 6.38529 6.53870 6.55987 6.63753 7.09747 7.20853 7.36653 7.41814 7.61104 7.77238 7.92341 7.94273 8.17602 8.49620 8.52970 8.62530 8.86676 8.97232 9.05507 9.30650 9.38558 10.42752 Molecular weight = 263.14amu Principal moments of inertia in cm(-1) A = 0.023840 B = 0.005757 C = 0.005029 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1174.201334 B = 4862.742642 C = 5566.759971 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.090 3.910 2 N -0.747 5.747 3 C 0.482 3.518 4 O -0.517 6.517 5 C 0.119 3.881 6 N -0.621 5.621 7 C 0.114 3.886 8 C 0.181 3.819 9 C -0.252 4.252 10 C -0.151 4.151 11 C 0.085 3.915 12 N -0.889 5.889 13 C 0.094 3.906 14 C -0.464 4.464 15 H 0.071 0.929 16 C 0.077 3.923 17 N -0.802 5.802 18 Si 0.903 3.097 19 H -0.269 1.269 20 H -0.281 1.281 21 H -0.267 1.267 22 C -0.195 4.195 23 H 0.056 0.944 24 H 0.054 0.946 25 H 0.069 0.931 26 H 0.398 0.602 27 H 0.088 0.912 28 H 0.100 0.900 29 H 0.037 0.963 30 H 0.042 0.958 31 H 0.069 0.931 32 H 0.081 0.919 33 H 0.084 0.916 34 H 0.373 0.627 35 H 0.389 0.611 36 H 0.275 0.725 37 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.806 -10.323 -2.465 11.650 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 N -0.402 5.402 3 C 0.266 3.734 4 O -0.390 6.390 5 C -0.011 4.011 6 N -0.337 5.337 7 C -0.030 4.030 8 C 0.085 3.915 9 C -0.276 4.276 10 C -0.175 4.175 11 C -0.016 4.016 12 N -0.432 5.432 13 C 0.089 3.911 14 C -0.495 4.495 15 H 0.089 0.911 16 C -0.139 4.139 17 N -0.428 5.428 18 Si 0.728 3.272 19 H -0.194 1.194 20 H -0.206 1.206 21 H -0.191 1.191 22 C -0.219 4.219 23 H 0.075 0.925 24 H 0.072 0.928 25 H 0.088 0.912 26 H 0.230 0.770 27 H 0.106 0.894 28 H 0.118 0.882 29 H 0.056 0.944 30 H 0.061 0.939 31 H 0.088 0.912 32 H 0.099 0.901 33 H 0.102 0.898 34 H 0.198 0.802 35 H 0.217 0.783 36 H 0.086 0.914 37 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -5.158 -9.562 -2.931 11.253 hybrid contribution 0.297 0.427 0.193 0.555 sum -4.861 -9.135 -2.738 10.705 Atomic orbital electron populations 1.21432 0.80573 1.01431 1.02049 1.45969 1.07290 1.08963 1.77966 1.22248 0.92115 0.83424 0.75604 1.90710 1.70145 1.31266 1.46852 1.20998 0.89062 0.87339 1.03663 1.45625 1.73002 1.10969 1.04060 1.21335 0.98462 0.98512 0.84676 1.17465 0.98120 0.92436 0.83447 1.19553 1.18017 0.98849 0.91140 1.19664 1.08404 0.93773 0.95692 1.17852 1.05593 0.91707 0.86468 1.41792 1.74916 1.22111 1.04333 1.16994 0.92331 0.92887 0.88875 1.19119 1.30950 0.96562 1.02916 0.91076 1.25751 0.94295 0.99223 0.94629 1.69846 1.23560 1.35829 1.13603 0.86471 0.78966 0.83529 0.78209 1.19423 1.20601 1.19143 1.20639 1.09727 0.92774 0.98800 0.92542 0.92751 0.91238 0.76965 0.89393 0.88231 0.94412 0.93937 0.91212 0.90084 0.89800 0.80170 0.78343 0.91397 0.85729 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.95 10.70 59.85 0.64 1.59 16 2 N -0.75 -8.75 5.71 -67.08 -0.38 -9.13 16 3 C 0.48 7.97 7.90 -10.99 -0.09 7.89 16 4 O -0.52 -11.29 16.43 5.56 0.09 -11.20 16 5 C 0.12 1.87 5.63 -5.19 -0.03 1.84 16 6 N -0.62 -12.79 2.50 -181.01 -0.45 -13.24 16 7 C 0.11 2.16 10.18 59.84 0.61 2.77 16 8 C 0.18 4.45 6.55 -83.77 -0.55 3.90 16 9 C -0.25 -5.95 9.20 -39.14 -0.36 -6.31 16 10 C -0.15 -3.59 9.87 -39.46 -0.39 -3.98 16 11 C 0.08 2.12 6.79 -83.23 -0.56 1.56 16 12 N -0.89 -18.78 8.97 32.75 0.29 -18.49 16 13 C 0.09 2.59 5.57 -106.66 -0.59 1.99 16 14 C -0.46 -12.50 8.44 -37.91 -0.32 -12.82 16 15 H 0.07 1.82 6.78 -52.49 -0.36 1.47 16 16 C 0.08 1.98 5.16 -17.33 -0.09 1.89 16 17 N -0.80 -21.17 10.96 55.54 0.61 -20.56 16 18 Si 0.90 19.35 29.59 -169.99 -5.03 14.32 16 19 H -0.27 -5.66 7.11 56.52 0.40 -5.25 16 20 H -0.28 -5.88 7.11 56.52 0.40 -5.48 16 21 H -0.27 -5.75 7.11 56.52 0.40 -5.35 16 22 C -0.20 -5.28 7.82 -38.75 -0.30 -5.59 16 23 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 24 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 25 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 26 H 0.40 3.14 8.83 -40.82 -0.36 2.78 16 27 H 0.09 1.07 8.07 -51.93 -0.42 0.65 16 28 H 0.10 1.48 6.18 -51.93 -0.32 1.15 16 29 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 30 H 0.04 0.70 8.07 -51.93 -0.42 0.28 16 31 H 0.07 1.48 6.18 -51.93 -0.32 1.16 16 32 H 0.08 1.71 6.11 -52.49 -0.32 1.38 16 33 H 0.08 1.77 8.06 -52.49 -0.42 1.35 16 34 H 0.37 6.68 8.84 -40.82 -0.36 6.32 16 35 H 0.39 8.05 7.11 -40.82 -0.29 7.76 16 36 H 0.28 6.70 8.30 -40.82 -0.34 6.36 16 37 H 0.13 3.45 4.27 -52.48 -0.22 3.23 16 LS Contribution 308.67 15.07 4.65 4.65 Total: -1.00 -33.45 308.67 -6.90 -40.34 By element: Atomic # 1 Polarization: 23.21 SS G_CDS: -4.64 Total: 18.57 kcal Atomic # 6 Polarization: -3.23 SS G_CDS: -2.04 Total: -5.27 kcal Atomic # 7 Polarization: -61.48 SS G_CDS: 0.07 Total: -61.42 kcal Atomic # 8 Polarization: -11.29 SS G_CDS: 0.09 Total: -11.20 kcal Atomic # 14 Polarization: 19.35 SS G_CDS: -5.03 Total: 14.32 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -33.45 -6.90 -40.34 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000127221834.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.624 kcal (2) G-P(sol) polarization free energy of solvation -33.447 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.177 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.897 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.344 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.280 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds