Wall clock time and date at job start Mon Mar 30 2020 04:27:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.34777 * 120.00009 * 2 1 4 4 O 1.21279 * 120.00275 * 0.02562 * 3 2 1 5 5 C 1.50699 * 119.99959 * 180.02562 * 3 2 1 6 6 N 1.46506 * 109.47225 * 180.02562 * 5 3 2 7 7 C 1.46493 * 119.99675 * 269.99589 * 6 5 3 8 8 C 1.39846 * 119.99957 * 89.99610 * 6 5 3 9 9 C 1.39608 * 119.84184 * 0.02562 * 8 6 5 10 10 C 1.38058 * 120.55013 * 180.02562 * 9 8 6 11 11 C 1.38733 * 120.21785 * 0.25424 * 10 9 8 12 12 N 1.38872 * 120.16201 * 179.74774 * 11 10 9 13 13 C 1.41556 * 119.67562 * 359.52232 * 11 10 9 14 14 C 1.41039 * 120.26894 * 180.20681 * 13 11 10 15 15 H 1.08001 * 119.99638 * 333.96246 * 14 13 11 16 16 C 1.39883 * 120.00195 * 153.96000 * 14 13 11 17 17 N 1.30899 * 119.99956 * 343.94081 * 16 14 13 18 18 Si 1.86796 * 120.00037 * 163.93834 * 16 14 13 19 19 H 1.48500 * 109.47275 * 59.99945 * 18 16 14 20 20 H 1.48499 * 109.47354 * 180.02562 * 18 16 14 21 21 H 1.48504 * 109.47033 * 300.00132 * 18 16 14 22 22 C 1.38007 * 119.84226 * 180.02562 * 8 6 5 23 23 H 1.09001 * 109.47061 * 300.00100 * 1 2 3 24 24 H 1.09002 * 109.47299 * 59.99850 * 1 2 3 25 25 H 1.08995 * 109.47240 * 179.97438 * 1 2 3 26 26 H 0.96996 * 119.99812 * 180.02562 * 2 1 3 27 27 H 1.09001 * 109.47499 * 59.99555 * 5 3 2 28 28 H 1.09002 * 109.46909 * 299.99774 * 5 3 2 29 29 H 1.08993 * 109.47344 * 269.99960 * 7 6 5 30 30 H 1.09000 * 109.47274 * 30.00291 * 7 6 5 31 31 H 1.09005 * 109.46775 * 149.99766 * 7 6 5 32 32 H 1.07997 * 119.72520 * 359.97438 * 9 8 6 33 33 H 1.08001 * 119.88677 * 179.97438 * 10 9 8 34 34 H 0.96997 * 119.99642 * 353.92268 * 12 11 10 35 35 H 0.96998 * 120.00405 * 173.92254 * 12 11 10 36 36 H 0.97003 * 120.00018 * 185.03814 * 17 16 14 37 37 H 1.08004 * 120.10942 * 359.97438 * 22 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 1.5325 2.2175 0.0005 5 6 3.6459 1.1672 -0.0006 6 7 4.1343 2.5484 0.0002 7 6 4.3780 3.2398 -1.2682 8 6 4.3677 3.2069 1.2116 9 6 4.1348 2.5447 2.4184 10 6 4.3599 3.1809 3.6228 11 6 4.8163 4.4908 3.6459 12 7 5.0373 5.1314 4.8581 13 6 5.0601 5.1696 2.4279 14 6 5.5284 6.4999 2.4368 15 1 5.3156 7.1416 3.2791 16 6 6.2685 6.9883 1.3549 17 7 6.7948 6.1555 0.4929 18 14 6.5055 8.8286 1.1401 19 1 7.2026 9.3801 2.3297 20 1 7.3205 9.0844 -0.0746 21 1 5.1812 9.4846 0.9942 22 6 4.8273 4.5082 1.2085 23 1 -0.3633 0.5139 0.8900 24 1 -0.3634 0.5139 -0.8900 25 1 -0.3633 -1.0276 -0.0005 26 1 1.9499 -0.8400 -0.0004 27 1 4.0089 0.6535 -0.8908 28 1 4.0095 0.6532 0.8892 29 1 5.4073 3.0687 -1.5833 30 1 3.6969 2.8562 -2.0278 31 1 4.2110 4.3089 -1.1371 32 1 3.7748 1.5265 2.4097 33 1 4.1757 2.6585 4.5500 34 1 4.7899 4.6960 5.6888 35 1 5.4390 6.0141 4.8740 36 1 7.3683 6.4885 -0.2151 37 1 5.0067 5.0172 0.2730 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000127221834.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:27:37 Heat of formation + Delta-G solvation = -20.535922 kcal Electronic energy + Delta-G solvation = -19894.726853 eV Core-core repulsion = 16864.048377 eV Total energy + Delta-G solvation = -3030.678476 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.137 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.78066 -39.58806 -37.22464 -35.47212 -35.33575 -33.73663 -31.52015 -30.38534 -28.70515 -27.67263 -26.46434 -24.70657 -22.77896 -21.70954 -20.86327 -19.06467 -18.22796 -17.87741 -17.32057 -16.93581 -16.65699 -16.37129 -15.91775 -15.41514 -15.17690 -14.80709 -14.32367 -14.08663 -13.93325 -13.72259 -13.49732 -13.20208 -13.05539 -12.86398 -12.82859 -12.61404 -12.52999 -12.07991 -11.68832 -11.53034 -11.08960 -10.91036 -10.84854 -10.05356 -9.25789 -9.10840 -8.45890 -7.27669 -5.98869 1.14261 1.40776 1.49961 1.52767 1.64034 1.74562 2.26371 2.27837 2.74354 2.94343 3.77893 3.95381 4.07324 4.25893 4.32893 4.42580 4.51140 4.62862 4.64528 4.81893 4.86743 4.95747 4.97305 5.25591 5.37611 5.46138 5.53417 5.59481 5.88432 6.06615 6.12983 6.27565 6.56789 6.63969 6.85453 7.04224 7.08070 7.16036 7.42410 7.47419 7.68094 8.53291 Molecular weight = 263.14amu Principal moments of inertia in cm(-1) A = 0.023840 B = 0.005757 C = 0.005029 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1174.201334 B = 4862.742642 C = 5566.759971 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.086 3.914 2 N -0.725 5.725 3 C 0.481 3.519 4 O -0.580 6.580 5 C 0.114 3.886 6 N -0.628 5.628 7 C 0.118 3.882 8 C 0.175 3.825 9 C -0.255 4.255 10 C -0.158 4.158 11 C 0.067 3.933 12 N -0.879 5.879 13 C 0.058 3.942 14 C -0.495 4.495 15 H 0.073 0.927 16 C 0.035 3.965 17 N -0.831 5.831 18 Si 0.974 3.026 19 H -0.259 1.259 20 H -0.272 1.272 21 H -0.270 1.270 22 C -0.225 4.225 23 H 0.037 0.963 24 H 0.044 0.956 25 H 0.115 0.885 26 H 0.420 0.580 27 H 0.132 0.868 28 H 0.114 0.886 29 H 0.046 0.954 30 H 0.069 0.931 31 H 0.035 0.965 32 H 0.109 0.891 33 H 0.112 0.888 34 H 0.390 0.610 35 H 0.390 0.610 36 H 0.280 0.720 37 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.076 -12.204 -2.465 13.446 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 N -0.379 5.379 3 C 0.266 3.734 4 O -0.458 6.458 5 C -0.014 4.014 6 N -0.343 5.343 7 C -0.026 4.026 8 C 0.077 3.923 9 C -0.279 4.279 10 C -0.182 4.182 11 C -0.035 4.035 12 N -0.423 5.423 13 C 0.053 3.947 14 C -0.526 4.526 15 H 0.091 0.909 16 C -0.178 4.178 17 N -0.458 5.458 18 Si 0.796 3.204 19 H -0.183 1.183 20 H -0.197 1.197 21 H -0.195 1.195 22 C -0.250 4.250 23 H 0.056 0.944 24 H 0.063 0.937 25 H 0.134 0.866 26 H 0.257 0.743 27 H 0.149 0.851 28 H 0.131 0.869 29 H 0.064 0.936 30 H 0.087 0.913 31 H 0.054 0.946 32 H 0.126 0.874 33 H 0.130 0.870 34 H 0.218 0.782 35 H 0.218 0.782 36 H 0.090 0.910 37 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -5.435 -11.545 -2.920 13.090 hybrid contribution 0.302 0.825 0.176 0.896 sum -5.133 -10.720 -2.744 12.198 Atomic orbital electron populations 1.21588 0.79524 1.03996 1.00698 1.45772 1.08011 1.08607 1.75546 1.22319 0.92444 0.83703 0.74930 1.90700 1.71213 1.33680 1.50223 1.21352 0.88642 0.85003 1.06401 1.45791 1.72797 1.12693 1.03021 1.21300 0.99591 0.96717 0.84980 1.17625 0.97207 0.91994 0.85523 1.19906 1.17192 1.00042 0.90741 1.20043 1.07594 0.93479 0.97079 1.18047 1.05949 0.92496 0.87027 1.41653 1.74560 1.22065 1.03984 1.17407 0.93446 0.93758 0.90118 1.19374 1.32178 0.97047 1.03995 0.90887 1.26551 0.93656 1.03684 0.93957 1.69930 1.24033 1.37782 1.14080 0.85383 0.78684 0.77674 0.78640 1.18319 1.19662 1.19482 1.20672 1.11730 0.94344 0.98228 0.94394 0.93723 0.86643 0.74314 0.85053 0.86876 0.93604 0.91285 0.94585 0.87351 0.87024 0.78237 0.78250 0.90983 0.87530 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.60 10.70 127.77 1.37 2.96 16 2 N -0.72 -14.68 5.71 -484.53 -2.77 -17.45 16 3 C 0.48 14.97 7.90 87.66 0.69 15.66 16 4 O -0.58 -25.26 16.43 -3.03 -0.05 -25.31 16 5 C 0.11 3.27 5.63 85.63 0.48 3.76 16 6 N -0.63 -25.50 2.50 -726.58 -1.82 -27.32 16 7 C 0.12 4.50 10.18 127.77 1.30 5.80 16 8 C 0.17 8.65 6.55 38.14 0.25 8.90 16 9 C -0.26 -11.80 9.20 22.56 0.21 -11.59 16 10 C -0.16 -7.36 9.87 22.35 0.22 -7.14 16 11 C 0.07 3.37 6.79 38.96 0.26 3.64 16 12 N -0.88 -36.92 8.97 -50.31 -0.45 -37.37 16 13 C 0.06 3.28 5.57 -21.18 -0.12 3.16 16 14 C -0.49 -27.52 8.44 23.36 0.20 -27.32 16 15 H 0.07 3.86 6.78 -2.91 -0.02 3.84 16 16 C 0.03 1.82 5.16 85.23 0.44 2.26 16 17 N -0.83 -45.35 10.96 21.82 0.24 -45.11 16 18 Si 0.97 40.47 29.59 68.60 2.03 42.50 16 19 H -0.26 -10.23 7.11 99.48 0.71 -9.53 16 20 H -0.27 -10.78 7.11 99.48 0.71 -10.07 16 21 H -0.27 -11.25 7.11 99.48 0.71 -10.54 16 22 C -0.23 -12.67 7.82 22.81 0.18 -12.49 16 23 H 0.04 0.86 8.14 -2.39 -0.02 0.84 16 24 H 0.04 0.94 8.14 -2.39 -0.02 0.92 16 25 H 0.12 1.08 8.14 -2.39 -0.02 1.06 16 26 H 0.42 4.80 8.83 -92.71 -0.82 3.98 16 27 H 0.13 2.63 8.07 -2.39 -0.02 2.61 16 28 H 0.11 2.96 6.18 -2.39 -0.01 2.94 16 29 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 30 H 0.07 2.22 8.07 -2.39 -0.02 2.20 16 31 H 0.04 1.60 6.18 -2.38 -0.01 1.59 16 32 H 0.11 4.29 6.11 -2.91 -0.02 4.27 16 33 H 0.11 4.47 8.06 -2.91 -0.02 4.44 16 34 H 0.39 13.52 8.84 -92.71 -0.82 12.70 16 35 H 0.39 16.22 7.11 -92.71 -0.66 15.56 16 36 H 0.28 14.01 8.30 -92.71 -0.77 13.24 16 37 H 0.11 6.25 4.27 -2.91 -0.01 6.24 16 Total: -1.00 -76.04 308.67 1.50 -74.54 By element: Atomic # 1 Polarization: 49.09 SS G_CDS: -1.17 Total: 47.93 kcal Atomic # 6 Polarization: -17.88 SS G_CDS: 5.48 Total: -12.40 kcal Atomic # 7 Polarization: -122.46 SS G_CDS: -4.80 Total: -127.25 kcal Atomic # 8 Polarization: -25.26 SS G_CDS: -0.05 Total: -25.31 kcal Atomic # 14 Polarization: 40.47 SS G_CDS: 2.03 Total: 42.50 kcal Total: -76.04 1.50 -74.54 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000127221834.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.003 kcal (2) G-P(sol) polarization free energy of solvation -76.040 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.037 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.501 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.539 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.536 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds