Wall clock time and date at job start Mon Mar 30 2020 04:24:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46898 * 111.00443 * 2 1 4 4 C 1.38459 * 110.99969 * 236.04369 * 2 1 3 5 5 C 1.39504 * 120.94505 * 60.00393 * 4 2 1 6 6 C 1.37778 * 119.20745 * 179.97438 * 5 4 2 7 7 N 1.32185 * 121.21954 * 359.97438 * 6 5 4 8 8 C 1.31634 * 122.12042 * 0.02562 * 7 6 5 9 9 C 1.39528 * 120.62348 * 359.74138 * 8 7 6 10 10 C 1.47454 * 120.63588 * 180.26671 * 9 8 7 11 11 O 1.21600 * 120.00407 * 180.24807 * 10 9 8 12 12 N 1.34781 * 120.00140 * 0.24433 * 10 9 8 13 13 C 1.46492 * 120.00060 * 180.02562 * 12 10 9 14 14 C 1.53005 * 109.47030 * 180.02562 * 13 12 10 15 15 C 1.50700 * 109.47382 * 180.02562 * 14 13 12 16 16 H 1.08003 * 119.99692 * 359.97438 * 15 14 13 17 17 C 1.37871 * 120.00141 * 179.97438 * 15 14 13 18 18 N 1.31511 * 119.99848 * 359.97438 * 17 15 14 19 19 Si 1.86800 * 120.00116 * 179.97438 * 17 15 14 20 20 H 1.48504 * 109.46908 * 359.97438 * 19 17 15 21 21 H 1.48499 * 109.47329 * 120.00008 * 19 17 15 22 22 H 1.48504 * 109.47178 * 240.00108 * 19 17 15 23 23 H 1.09002 * 109.47401 * 183.95136 * 1 2 3 24 24 H 1.09001 * 109.46874 * 63.95149 * 1 2 3 25 25 H 1.09004 * 109.46970 * 303.95282 * 1 2 3 26 26 H 1.09007 * 109.46909 * 60.00094 * 3 2 1 27 27 H 1.08998 * 109.47110 * 179.97438 * 3 2 1 28 28 H 1.09002 * 109.47061 * 300.00284 * 3 2 1 29 29 H 1.07996 * 120.39973 * 359.94949 * 5 4 2 30 30 H 1.08000 * 119.39080 * 179.97438 * 6 5 4 31 31 H 1.07997 * 119.69057 * 179.97438 * 8 7 6 32 32 H 0.96998 * 119.99573 * 0.02562 * 12 10 9 33 33 H 1.09000 * 109.47324 * 299.99602 * 13 12 10 34 34 H 1.09003 * 109.47581 * 60.00081 * 13 12 10 35 35 H 1.09008 * 109.46796 * 299.99624 * 14 13 12 36 36 H 1.08998 * 109.47393 * 59.99392 * 14 13 12 37 37 H 0.97005 * 119.99726 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9956 1.3714 0.0000 4 6 1.9652 -0.7220 -1.0722 5 6 1.6638 -0.3563 -2.3843 6 6 2.1773 -1.1000 -3.4243 7 7 2.9483 -2.1501 -3.2004 8 6 3.2645 -2.5395 -1.9834 9 6 2.7937 -1.8434 -0.8696 10 6 3.1524 -2.2760 0.4936 11 8 2.7320 -1.6635 1.4563 12 7 3.9463 -3.3503 0.6728 13 6 4.3023 -3.7804 2.0272 14 6 5.2055 -5.0130 1.9500 15 6 5.5712 -5.4558 3.3433 16 1 5.1972 -4.9122 4.1983 17 6 6.3832 -6.5549 3.5264 18 7 6.8382 -7.2171 2.4853 19 14 6.8371 -7.1034 5.2534 20 1 6.2021 -6.1969 6.2436 21 1 6.3581 -8.4916 5.4739 22 1 8.3125 -7.0572 5.4158 23 1 -0.3634 -1.0252 0.0708 24 1 -0.3633 0.4513 -0.9233 25 1 -0.3633 0.5740 0.8525 26 1 1.6461 1.8947 0.8901 27 1 3.0851 1.3422 0.0005 28 1 1.6460 1.8948 -0.8900 29 1 1.0353 0.4992 -2.5825 30 1 1.9455 -0.8197 -4.4412 31 1 3.8973 -3.4038 -1.8458 32 1 4.2820 -3.8387 -0.0951 33 1 4.8305 -2.9748 2.5372 34 1 3.3959 -4.0277 2.5799 35 1 4.6776 -5.8188 1.4398 36 1 6.1118 -4.7653 1.3974 37 1 7.4093 -7.9906 2.6142 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000273656351.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:24:09 Heat of formation + Delta-G solvation = 12.814298 kcal Electronic energy + Delta-G solvation = -19298.550861 eV Core-core repulsion = 16269.318559 eV Total energy + Delta-G solvation = -3029.232302 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.137 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.89826 -38.57756 -37.54589 -34.74456 -32.90000 -31.79510 -31.24025 -29.38285 -27.80818 -25.63864 -24.94301 -23.94987 -21.79493 -20.91617 -20.32400 -17.82364 -17.08615 -16.70659 -16.27456 -15.46699 -14.94851 -14.83820 -14.66582 -14.62116 -14.43856 -14.03371 -13.73824 -13.06685 -12.83141 -12.55986 -12.52139 -12.27246 -12.15030 -11.91190 -11.16288 -11.03306 -10.61052 -10.30765 -10.11681 -9.71494 -9.64241 -9.40303 -9.34117 -9.16824 -8.49712 -8.48860 -8.29478 -6.07400 -4.09967 0.59158 0.89950 3.11856 3.29970 3.37460 3.42267 3.53938 3.64954 3.86474 4.17158 4.43667 4.56695 4.69516 4.82839 5.02483 5.02874 5.17029 5.29877 5.31386 5.34165 5.40166 5.43670 5.68214 5.69411 5.90603 6.28428 6.39090 6.39780 6.66897 6.77467 6.95951 7.08050 7.55053 7.64550 7.69882 7.91306 8.05935 8.30836 8.73285 8.96391 9.54884 11.04279 Molecular weight = 263.14amu Principal moments of inertia in cm(-1) A = 0.031348 B = 0.003940 C = 0.003584 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 892.981005 B = 7104.009326 C = 7810.719345 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 N -0.493 5.493 3 C 0.036 3.964 4 C 0.189 3.811 5 C -0.217 4.217 6 C 0.122 3.878 7 N -0.490 5.490 8 C 0.140 3.860 9 C -0.161 4.161 10 C 0.548 3.452 11 O -0.507 6.507 12 N -0.722 5.722 13 C 0.125 3.875 14 C 0.011 3.989 15 C -0.520 4.520 16 H 0.060 0.940 17 C 0.059 3.941 18 N -0.894 5.894 19 Si 0.896 3.104 20 H -0.271 1.271 21 H -0.283 1.283 22 H -0.283 1.283 23 H 0.070 0.930 24 H 0.028 0.972 25 H 0.078 0.922 26 H 0.078 0.922 27 H 0.070 0.930 28 H 0.027 0.973 29 H 0.136 0.864 30 H 0.158 0.842 31 H 0.165 0.835 32 H 0.393 0.607 33 H 0.057 0.943 34 H 0.057 0.943 35 H 0.023 0.977 36 H 0.023 0.977 37 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.042 14.710 -11.470 21.676 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 N -0.213 5.213 3 C -0.111 4.111 4 C 0.085 3.915 5 C -0.239 4.239 6 C -0.034 4.034 7 N -0.199 5.199 8 C -0.020 4.020 9 C -0.168 4.168 10 C 0.332 3.668 11 O -0.382 6.382 12 N -0.374 5.374 13 C 0.003 3.997 14 C -0.026 4.026 15 C -0.559 4.559 16 H 0.078 0.922 17 C -0.143 4.143 18 N -0.533 5.533 19 Si 0.724 3.276 20 H -0.196 1.196 21 H -0.210 1.210 22 H -0.210 1.210 23 H 0.089 0.911 24 H 0.046 0.954 25 H 0.096 0.904 26 H 0.097 0.903 27 H 0.089 0.911 28 H 0.046 0.954 29 H 0.153 0.847 30 H 0.175 0.825 31 H 0.182 0.818 32 H 0.228 0.772 33 H 0.075 0.925 34 H 0.075 0.925 35 H 0.041 0.959 36 H 0.041 0.959 37 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -10.771 14.331 -11.025 21.046 hybrid contribution -0.111 0.208 0.432 0.492 sum -10.883 14.539 -10.593 21.024 Atomic orbital electron populations 1.22430 0.85155 1.02987 1.00718 1.59068 1.08405 1.14042 1.39767 1.22403 1.01132 0.86595 1.00923 1.19081 0.91552 0.91798 0.89033 1.22702 1.04340 1.03027 0.93868 1.22726 0.91390 0.89850 0.99400 1.67704 1.13253 1.14807 1.24112 1.23136 0.94811 0.97380 0.86635 1.21341 1.01665 0.97774 0.95974 1.17795 0.79915 0.81295 0.87762 1.90814 1.52449 1.54013 1.40904 1.46310 1.50282 1.29820 1.10987 1.21704 0.99217 0.98498 0.80274 1.19343 0.94122 0.90930 0.98239 1.21089 1.30245 1.12484 0.92063 0.92187 1.24990 0.95827 0.96363 0.97105 1.69965 1.34372 1.19591 1.29368 0.86470 0.78183 0.78531 0.84461 1.19582 1.20954 1.20960 0.91092 0.95364 0.90359 0.90320 0.91140 0.95403 0.84655 0.82500 0.81764 0.77236 0.92506 0.92494 0.95902 0.95903 0.92917 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.34 9.34 60.07 0.56 0.91 16 2 N -0.49 -6.38 3.08 -186.40 -0.57 -6.96 16 3 C 0.04 0.37 9.33 60.06 0.56 0.93 16 4 C 0.19 2.46 4.72 -83.40 -0.39 2.06 16 5 C -0.22 -2.17 8.70 -39.28 -0.34 -2.52 16 6 C 0.12 1.22 11.15 -17.57 -0.20 1.03 16 7 N -0.49 -6.08 10.34 -13.01 -0.13 -6.21 16 8 C 0.14 1.80 10.71 -17.16 -0.18 1.62 16 9 C -0.16 -2.35 5.91 -104.66 -0.62 -2.97 16 10 C 0.55 9.75 7.77 -12.50 -0.10 9.65 16 11 O -0.51 -10.54 15.16 5.28 0.08 -10.46 16 12 N -0.72 -12.86 5.51 -61.38 -0.34 -13.19 16 13 C 0.13 2.67 5.61 -4.04 -0.02 2.65 16 14 C 0.01 0.27 5.09 -27.88 -0.14 0.13 16 15 C -0.52 -14.44 9.11 -34.44 -0.31 -14.75 16 16 H 0.06 1.64 7.74 -52.48 -0.41 1.23 16 17 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 18 N -0.89 -26.14 13.29 55.43 0.74 -25.41 16 19 Si 0.90 21.41 29.54 -169.99 -5.02 16.39 16 20 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 21 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 22 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 23 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 24 H 0.03 0.23 7.18 -51.93 -0.37 -0.14 16 25 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 26 H 0.08 0.74 8.14 -51.92 -0.42 0.32 16 27 H 0.07 0.80 8.12 -51.93 -0.42 0.38 16 28 H 0.03 0.23 7.54 -51.93 -0.39 -0.16 16 29 H 0.14 1.01 7.19 -52.49 -0.38 0.64 16 30 H 0.16 1.05 8.06 -52.49 -0.42 0.62 16 31 H 0.17 1.84 6.42 -52.49 -0.34 1.51 16 32 H 0.39 6.05 6.54 -40.82 -0.27 5.78 16 33 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 34 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 35 H 0.02 0.59 8.14 -51.92 -0.42 0.16 16 36 H 0.02 0.59 8.14 -51.93 -0.42 0.16 16 37 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 LS Contribution 315.23 15.07 4.75 4.75 Total: -1.00 -32.80 315.23 -6.88 -39.68 By element: Atomic # 1 Polarization: 6.21 SS G_CDS: -5.09 Total: 1.12 kcal Atomic # 6 Polarization: 1.59 SS G_CDS: -1.28 Total: 0.30 kcal Atomic # 7 Polarization: -51.47 SS G_CDS: -0.31 Total: -51.78 kcal Atomic # 8 Polarization: -10.54 SS G_CDS: 0.08 Total: -10.46 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.39 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -32.80 -6.88 -39.68 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273656351.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.492 kcal (2) G-P(sol) polarization free energy of solvation -32.803 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.690 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.875 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.678 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.814 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds