Wall clock time and date at job start Mon Mar 30 2020 04:24:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46898 * 111.00443 * 2 1 4 4 C 1.38459 * 110.99969 * 236.04369 * 2 1 3 5 5 C 1.39504 * 120.94505 * 60.00393 * 4 2 1 6 6 C 1.37778 * 119.20745 * 179.97438 * 5 4 2 7 7 N 1.32185 * 121.21954 * 359.97438 * 6 5 4 8 8 C 1.31634 * 122.12042 * 0.02562 * 7 6 5 9 9 C 1.39528 * 120.62348 * 359.74138 * 8 7 6 10 10 C 1.47454 * 120.63588 * 180.26671 * 9 8 7 11 11 O 1.21600 * 120.00407 * 180.24807 * 10 9 8 12 12 N 1.34781 * 120.00140 * 0.24433 * 10 9 8 13 13 C 1.46492 * 120.00060 * 180.02562 * 12 10 9 14 14 C 1.53005 * 109.47030 * 180.02562 * 13 12 10 15 15 C 1.50700 * 109.47382 * 180.02562 * 14 13 12 16 16 H 1.08003 * 119.99692 * 359.97438 * 15 14 13 17 17 C 1.37871 * 120.00141 * 179.97438 * 15 14 13 18 18 N 1.31511 * 119.99848 * 359.97438 * 17 15 14 19 19 Si 1.86800 * 120.00116 * 179.97438 * 17 15 14 20 20 H 1.48504 * 109.46908 * 359.97438 * 19 17 15 21 21 H 1.48499 * 109.47329 * 120.00008 * 19 17 15 22 22 H 1.48504 * 109.47178 * 240.00108 * 19 17 15 23 23 H 1.09002 * 109.47401 * 183.95136 * 1 2 3 24 24 H 1.09001 * 109.46874 * 63.95149 * 1 2 3 25 25 H 1.09004 * 109.46970 * 303.95282 * 1 2 3 26 26 H 1.09007 * 109.46909 * 60.00094 * 3 2 1 27 27 H 1.08998 * 109.47110 * 179.97438 * 3 2 1 28 28 H 1.09002 * 109.47061 * 300.00284 * 3 2 1 29 29 H 1.07996 * 120.39973 * 359.94949 * 5 4 2 30 30 H 1.08000 * 119.39080 * 179.97438 * 6 5 4 31 31 H 1.07997 * 119.69057 * 179.97438 * 8 7 6 32 32 H 0.96998 * 119.99573 * 0.02562 * 12 10 9 33 33 H 1.09000 * 109.47324 * 299.99602 * 13 12 10 34 34 H 1.09003 * 109.47581 * 60.00081 * 13 12 10 35 35 H 1.09008 * 109.46796 * 299.99624 * 14 13 12 36 36 H 1.08998 * 109.47393 * 59.99392 * 14 13 12 37 37 H 0.97005 * 119.99726 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9956 1.3714 0.0000 4 6 1.9652 -0.7220 -1.0722 5 6 1.6638 -0.3563 -2.3843 6 6 2.1773 -1.1000 -3.4243 7 7 2.9483 -2.1501 -3.2004 8 6 3.2645 -2.5395 -1.9834 9 6 2.7937 -1.8434 -0.8696 10 6 3.1524 -2.2760 0.4936 11 8 2.7320 -1.6635 1.4563 12 7 3.9463 -3.3503 0.6728 13 6 4.3023 -3.7804 2.0272 14 6 5.2055 -5.0130 1.9500 15 6 5.5712 -5.4558 3.3433 16 1 5.1972 -4.9122 4.1983 17 6 6.3832 -6.5549 3.5264 18 7 6.8382 -7.2171 2.4853 19 14 6.8371 -7.1034 5.2534 20 1 6.2021 -6.1969 6.2436 21 1 6.3581 -8.4916 5.4739 22 1 8.3125 -7.0572 5.4158 23 1 -0.3634 -1.0252 0.0708 24 1 -0.3633 0.4513 -0.9233 25 1 -0.3633 0.5740 0.8525 26 1 1.6461 1.8947 0.8901 27 1 3.0851 1.3422 0.0005 28 1 1.6460 1.8948 -0.8900 29 1 1.0353 0.4992 -2.5825 30 1 1.9455 -0.8197 -4.4412 31 1 3.8973 -3.4038 -1.8458 32 1 4.2820 -3.8387 -0.0951 33 1 4.8305 -2.9748 2.5372 34 1 3.3959 -4.0277 2.5799 35 1 4.6776 -5.8188 1.4398 36 1 6.1118 -4.7653 1.3974 37 1 7.4093 -7.9906 2.6142 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000273656351.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:24:09 Heat of formation + Delta-G solvation = -9.898214 kcal Electronic energy + Delta-G solvation = -19299.535749 eV Core-core repulsion = 16269.318559 eV Total energy + Delta-G solvation = -3030.217190 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.137 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.88853 -39.95339 -38.42689 -36.48651 -34.81549 -33.01424 -32.11208 -31.14185 -28.58541 -27.13030 -26.05141 -25.26134 -23.12077 -22.35141 -21.69110 -19.01489 -18.49991 -17.92957 -17.71619 -16.57747 -16.47307 -16.28834 -15.99897 -15.84391 -15.53289 -14.93541 -14.90011 -14.42238 -14.33544 -14.26492 -13.36327 -13.27230 -13.17998 -12.99228 -12.93975 -12.73464 -12.50851 -12.22783 -11.67336 -11.45124 -11.13969 -10.63075 -10.59604 -10.48909 -10.31325 -9.92265 -9.35772 -8.22900 -6.33198 -0.38217 0.01318 1.41872 1.42783 1.56001 1.94330 2.22377 2.45722 2.70589 2.78527 3.11991 3.30821 3.73843 3.83321 3.87485 4.08675 4.30780 4.34496 4.42912 4.51851 4.53026 4.54693 4.57640 4.63488 4.87201 4.90121 4.91720 5.06599 5.30431 5.43555 5.51447 5.59865 5.80441 5.89142 6.17639 6.22083 6.65141 6.80210 6.81539 7.32270 7.36174 8.89238 Molecular weight = 263.14amu Principal moments of inertia in cm(-1) A = 0.031348 B = 0.003940 C = 0.003584 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 892.981005 B = 7104.009326 C = 7810.719345 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 N -0.527 5.527 3 C 0.038 3.962 4 C 0.184 3.816 5 C -0.205 4.205 6 C 0.132 3.868 7 N -0.507 5.507 8 C 0.141 3.859 9 C -0.190 4.190 10 C 0.551 3.449 11 O -0.543 6.543 12 N -0.719 5.719 13 C 0.146 3.854 14 C 0.022 3.978 15 C -0.545 4.545 16 H 0.059 0.941 17 C 0.007 3.993 18 N -0.927 5.927 19 Si 0.965 3.035 20 H -0.265 1.265 21 H -0.277 1.277 22 H -0.277 1.277 23 H 0.053 0.947 24 H 0.056 0.944 25 H 0.085 0.915 26 H 0.083 0.917 27 H 0.052 0.948 28 H 0.056 0.944 29 H 0.169 0.831 30 H 0.198 0.802 31 H 0.171 0.829 32 H 0.405 0.595 33 H 0.046 0.954 34 H 0.046 0.954 35 H 0.009 0.991 36 H 0.009 0.991 37 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.951 15.911 -12.627 23.567 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 N -0.248 5.248 3 C -0.108 4.108 4 C 0.080 3.920 5 C -0.227 4.227 6 C -0.023 4.023 7 N -0.216 5.216 8 C -0.018 4.018 9 C -0.196 4.196 10 C 0.337 3.663 11 O -0.421 6.421 12 N -0.372 5.372 13 C 0.022 3.978 14 C -0.016 4.016 15 C -0.584 4.584 16 H 0.077 0.923 17 C -0.191 4.191 18 N -0.566 5.566 19 Si 0.790 3.210 20 H -0.190 1.190 21 H -0.202 1.202 22 H -0.202 1.202 23 H 0.072 0.928 24 H 0.074 0.926 25 H 0.103 0.897 26 H 0.102 0.898 27 H 0.071 0.929 28 H 0.074 0.926 29 H 0.187 0.813 30 H 0.214 0.786 31 H 0.188 0.812 32 H 0.241 0.759 33 H 0.065 0.935 34 H 0.065 0.935 35 H 0.027 0.973 36 H 0.027 0.973 37 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -11.686 15.538 -12.210 22.958 hybrid contribution 0.121 -0.102 0.695 0.713 sum -11.565 15.437 -11.515 22.464 Atomic orbital electron populations 1.22440 0.83784 1.02353 1.02472 1.58984 1.09868 1.15326 1.40664 1.22403 1.00022 0.85795 1.02552 1.19301 0.91027 0.91228 0.90475 1.22960 1.03921 1.03616 0.92173 1.23428 0.89332 0.88312 1.01273 1.67791 1.14344 1.16120 1.23374 1.23193 0.94643 0.97382 0.86561 1.21124 1.04468 0.99934 0.94122 1.18272 0.78714 0.80283 0.89019 1.90781 1.53778 1.55035 1.42470 1.46118 1.50719 1.30403 1.09936 1.21190 0.97807 0.96667 0.82107 1.19152 0.93874 0.91746 0.96816 1.21490 1.30657 1.12983 0.93234 0.92307 1.25860 0.95603 0.96339 1.01320 1.70067 1.34916 1.20087 1.31557 0.85398 0.78051 0.78193 0.79407 1.18963 1.20217 1.20227 0.92786 0.92599 0.89670 0.89808 0.92918 0.92589 0.81311 0.78569 0.81203 0.75867 0.93523 0.93524 0.97278 0.97271 0.92557 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.67 9.34 127.69 1.19 1.86 16 2 N -0.53 -13.11 3.08 -743.65 -2.29 -15.40 16 3 C 0.04 0.73 9.33 127.69 1.19 1.92 16 4 C 0.18 4.51 4.72 39.05 0.18 4.69 16 5 C -0.20 -3.39 8.70 22.47 0.20 -3.20 16 6 C 0.13 2.17 11.15 84.53 0.94 3.11 16 7 N -0.51 -11.53 10.34 -195.07 -2.02 -13.55 16 8 C 0.14 3.55 10.71 85.03 0.91 4.46 16 9 C -0.19 -5.51 5.91 -19.89 -0.12 -5.62 16 10 C 0.55 20.11 7.77 86.67 0.67 20.79 16 11 O -0.54 -23.31 15.16 -4.03 -0.06 -23.38 16 12 N -0.72 -26.45 5.51 -466.35 -2.57 -29.01 16 13 C 0.15 6.45 5.61 86.38 0.48 6.94 16 14 C 0.02 1.11 5.09 29.85 0.15 1.26 16 15 C -0.55 -30.81 9.11 25.60 0.23 -30.58 16 16 H 0.06 3.26 7.74 -2.91 -0.02 3.24 16 17 C 0.01 0.42 5.46 84.65 0.46 0.88 16 18 N -0.93 -54.73 13.29 21.44 0.28 -54.45 16 19 Si 0.96 43.98 29.54 68.60 2.03 46.01 16 20 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 21 H -0.28 -12.24 7.11 99.48 0.71 -11.54 16 22 H -0.28 -12.25 7.11 99.48 0.71 -11.54 16 23 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 24 H 0.06 0.72 7.18 -2.39 -0.02 0.70 16 25 H 0.08 1.44 8.14 -2.38 -0.02 1.42 16 26 H 0.08 1.48 8.14 -2.38 -0.02 1.46 16 27 H 0.05 1.18 8.12 -2.39 -0.02 1.16 16 28 H 0.06 0.74 7.54 -2.39 -0.02 0.72 16 29 H 0.17 1.64 7.19 -2.91 -0.02 1.62 16 30 H 0.20 1.61 8.06 -2.91 -0.02 1.59 16 31 H 0.17 3.82 6.42 -2.91 -0.02 3.80 16 32 H 0.41 12.87 6.54 -92.71 -0.61 12.26 16 33 H 0.05 2.14 8.14 -2.39 -0.02 2.13 16 34 H 0.05 2.15 8.14 -2.39 -0.02 2.13 16 35 H 0.01 0.48 8.14 -2.38 -0.02 0.46 16 36 H 0.01 0.48 8.14 -2.39 -0.02 0.46 16 37 H 0.27 14.69 8.31 -92.70 -0.77 13.92 16 Total: -1.00 -71.53 315.23 2.35 -69.18 By element: Atomic # 1 Polarization: 13.62 SS G_CDS: 0.47 Total: 14.09 kcal Atomic # 6 Polarization: 0.00 SS G_CDS: 6.51 Total: 6.50 kcal Atomic # 7 Polarization: -105.82 SS G_CDS: -6.59 Total: -112.41 kcal Atomic # 8 Polarization: -23.31 SS G_CDS: -0.06 Total: -23.38 kcal Atomic # 14 Polarization: 43.98 SS G_CDS: 2.03 Total: 46.01 kcal Total: -71.53 2.35 -69.18 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273656351.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.282 kcal (2) G-P(sol) polarization free energy of solvation -71.529 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.247 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.349 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.180 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.898 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds