Wall clock time and date at job start Mon Mar 30 2020 04:23:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.46496 * 120.00299 * 2 1 4 4 C 1.39215 * 120.00218 * 179.97438 * 2 1 3 5 5 C 1.39118 * 119.62563 * 5.00210 * 4 2 1 6 6 C 1.38252 * 119.16618 * 179.97438 * 5 4 2 7 7 C 1.39409 * 118.44945 * 0.02562 * 6 5 4 8 8 N 1.40191 * 120.40563 * 179.97438 * 7 6 5 9 9 C 1.34776 * 119.99787 * 32.62566 * 8 7 6 10 10 O 1.21299 * 120.00258 * 5.26995 * 9 8 7 11 11 C 1.50706 * 119.99609 * 185.27033 * 9 8 7 12 12 C 1.52999 * 109.46738 * 179.97438 * 11 9 8 13 13 C 1.50705 * 109.47105 * 179.97438 * 12 11 9 14 14 H 1.07999 * 119.99617 * 0.02562 * 13 12 11 15 15 C 1.37873 * 120.00381 * 179.97438 * 13 12 11 16 16 N 1.31517 * 119.99887 * 0.02562 * 15 13 12 17 17 Si 1.86797 * 120.00416 * 180.02562 * 15 13 12 18 18 H 1.48501 * 109.46922 * 59.99967 * 17 15 13 19 19 H 1.48494 * 109.47344 * 180.02562 * 17 15 13 20 20 H 1.48501 * 109.47079 * 300.00679 * 17 15 13 21 21 C 1.38616 * 119.19087 * 359.97371 * 7 6 5 22 22 N 1.31966 * 120.76183 * 0.02765 * 21 7 6 23 23 H 1.09000 * 109.47229 * 270.00206 * 1 2 3 24 24 H 1.09006 * 109.46760 * 30.00046 * 1 2 3 25 25 H 1.08997 * 109.47474 * 149.99723 * 1 2 3 26 26 H 1.09001 * 109.47329 * 269.99940 * 3 2 1 27 27 H 1.09002 * 109.47423 * 29.99891 * 3 2 1 28 28 H 1.09000 * 109.47408 * 149.99870 * 3 2 1 29 29 H 1.08001 * 120.41450 * 0.02562 * 5 4 2 30 30 H 1.08007 * 120.77038 * 179.72934 * 6 5 4 31 31 H 0.96995 * 119.99863 * 212.63166 * 8 7 6 32 32 H 1.08995 * 109.46941 * 300.00006 * 11 9 8 33 33 H 1.09003 * 109.47329 * 60.00341 * 11 9 8 34 34 H 1.08995 * 109.47500 * 299.99775 * 12 11 9 35 35 H 1.09008 * 109.47277 * 60.00010 * 12 11 9 36 36 H 0.96998 * 120.00307 * 179.97438 * 16 15 13 37 37 H 1.08007 * 119.61648 * 180.02562 * 21 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.1611 -1.2056 0.0005 5 6 1.4617 -2.4036 -0.1044 6 6 2.1625 -3.5953 -0.1034 7 6 3.5517 -3.5486 0.0039 8 7 4.3031 -4.7322 0.0096 9 6 3.8851 -5.7991 -0.7000 10 8 2.9123 -5.7063 -1.4186 11 6 4.6265 -7.1074 -0.6006 12 6 3.9508 -8.1458 -1.4983 13 6 4.6925 -9.4540 -1.3995 14 1 5.5588 -9.5365 -0.7599 15 6 4.2644 -10.5457 -2.1246 16 7 3.2091 -10.4454 -2.9031 17 14 5.1833 -12.1674 -2.0015 18 1 5.1642 -12.6416 -0.5944 19 1 4.5276 -13.1753 -2.8729 20 1 6.5890 -11.9744 -2.4397 21 6 4.1810 -2.3177 0.1050 22 7 3.4807 -1.1992 0.1008 23 1 -0.3634 0.0000 1.0277 24 1 -0.3633 0.8900 -0.5139 25 1 -0.3634 -0.8899 -0.5138 26 1 2.3792 1.5833 -1.0277 27 1 1.6085 2.0284 0.5138 28 1 3.1499 1.1383 0.5138 29 1 0.3848 -2.4026 -0.1864 30 1 1.6455 -4.5405 -0.1792 31 1 5.1236 -4.7832 0.5243 32 1 5.6584 -6.9655 -0.9215 33 1 4.6117 -7.4559 0.4321 34 1 2.9190 -8.2876 -1.1770 35 1 3.9651 -7.7976 -2.5312 36 1 2.9082 -11.2133 -3.4135 37 1 5.2570 -2.2735 0.1880 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000292551279.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:23:40 Heat of formation + Delta-G solvation = 8.454665 kcal Electronic energy + Delta-G solvation = -18806.720196 eV Core-core repulsion = 15777.298847 eV Total energy + Delta-G solvation = -3029.421350 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.137 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.61717 -39.10712 -36.62379 -34.34743 -33.51183 -32.18485 -31.08624 -29.31296 -28.38744 -26.04948 -24.82687 -23.32252 -22.26314 -21.01962 -19.69203 -17.80025 -17.19820 -16.86676 -16.36618 -15.60674 -15.36692 -14.96089 -14.69105 -14.47161 -14.28788 -13.53200 -13.45465 -13.14282 -12.81263 -12.55388 -12.37216 -12.28442 -12.17039 -12.02936 -11.21118 -10.94520 -10.76276 -10.64012 -9.99844 -9.85620 -9.67740 -9.61816 -9.25317 -9.12057 -8.81897 -8.34257 -7.25773 -5.98212 -4.02969 1.26723 1.49012 2.81750 3.11207 3.33444 3.37511 3.39069 3.44441 3.98321 4.45343 4.47948 4.83795 4.95468 5.04015 5.09750 5.13940 5.23223 5.36806 5.41316 5.45483 5.54397 5.66695 5.73872 5.94660 6.11396 6.15462 6.21429 6.40646 6.80361 6.83967 6.89072 7.30365 7.69904 7.72349 7.81589 8.03633 8.11635 8.34715 8.62370 9.04970 9.60794 11.12684 Molecular weight = 263.14amu Principal moments of inertia in cm(-1) A = 0.056306 B = 0.003144 C = 0.003019 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 497.163586 B = 8902.970068 C = 9273.685567 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.097 3.903 2 N -0.624 5.624 3 C 0.103 3.897 4 C 0.377 3.623 5 C -0.217 4.217 6 C -0.036 4.036 7 C 0.052 3.948 8 N -0.679 5.679 9 C 0.509 3.491 10 O -0.518 6.518 11 C -0.129 4.129 12 C 0.037 3.963 13 C -0.529 4.529 14 H 0.056 0.944 15 C 0.058 3.942 16 N -0.890 5.890 17 Si 0.894 3.106 18 H -0.277 1.277 19 H -0.287 1.287 20 H -0.277 1.277 21 C 0.115 3.885 22 N -0.525 5.525 23 H 0.049 0.951 24 H 0.068 0.932 25 H 0.071 0.929 26 H 0.043 0.957 27 H 0.059 0.941 28 H 0.077 0.923 29 H 0.134 0.866 30 H 0.147 0.853 31 H 0.408 0.592 32 H 0.083 0.917 33 H 0.084 0.916 34 H 0.024 0.976 35 H 0.024 0.976 36 H 0.262 0.738 37 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.712 20.935 8.610 22.701 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.046 4.046 2 N -0.341 5.341 3 C -0.041 4.041 4 C 0.143 3.857 5 C -0.241 4.241 6 C -0.064 4.064 7 C -0.047 4.047 8 N -0.326 5.326 9 C 0.298 3.702 10 O -0.392 6.392 11 C -0.168 4.168 12 C -0.001 4.001 13 C -0.567 4.567 14 H 0.074 0.926 15 C -0.144 4.144 16 N -0.528 5.528 17 Si 0.721 3.279 18 H -0.202 1.202 19 H -0.213 1.213 20 H -0.202 1.202 21 C -0.044 4.044 22 N -0.242 5.242 23 H 0.068 0.932 24 H 0.087 0.913 25 H 0.090 0.910 26 H 0.062 0.938 27 H 0.078 0.922 28 H 0.096 0.904 29 H 0.151 0.849 30 H 0.164 0.836 31 H 0.244 0.756 32 H 0.101 0.899 33 H 0.102 0.898 34 H 0.042 0.958 35 H 0.043 0.957 36 H 0.071 0.929 37 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -2.197 21.769 8.013 23.301 hybrid contribution 0.439 -1.696 0.154 1.759 sum -1.757 20.072 8.167 21.742 Atomic orbital electron populations 1.21664 0.78726 1.02941 1.01302 1.46078 1.04804 1.02870 1.80303 1.21490 0.97569 0.84033 1.00969 1.18251 0.88414 0.85783 0.93253 1.21362 1.01033 0.91148 1.10607 1.21449 0.92442 0.99074 0.93455 1.18611 0.91751 0.87434 1.06857 1.43768 1.27192 1.11212 1.50420 1.21827 0.85133 0.85563 0.77653 1.90675 1.27270 1.83853 1.37381 1.21900 1.00201 0.91074 1.03672 1.18909 0.95912 0.90843 0.94399 1.21169 1.13186 0.95572 1.26786 0.92589 1.25023 0.95079 0.98979 0.95273 1.69983 1.24173 1.30764 1.27899 0.86639 0.79918 0.83327 0.77971 1.20229 1.21283 1.20228 1.22145 0.99271 0.85467 0.97513 1.67037 1.06279 1.30535 1.20329 0.93214 0.91284 0.91027 0.93834 0.92247 0.90381 0.84857 0.83568 0.75640 0.89886 0.89796 0.95765 0.95746 0.92853 0.82730 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.73 10.28 59.84 0.62 1.34 16 2 N -0.62 -6.69 3.40 -189.62 -0.64 -7.33 16 3 C 0.10 0.90 10.50 59.84 0.63 1.53 16 4 C 0.38 5.04 7.37 -154.87 -1.14 3.90 16 5 C -0.22 -2.92 9.27 -39.25 -0.36 -3.28 16 6 C -0.04 -0.56 8.75 -39.14 -0.34 -0.90 16 7 C 0.05 0.76 6.31 -83.46 -0.53 0.24 16 8 N -0.68 -9.63 5.36 -9.73 -0.05 -9.68 16 9 C 0.51 9.50 7.60 -10.98 -0.08 9.42 16 10 O -0.52 -11.78 13.67 5.54 0.08 -11.70 16 11 C -0.13 -2.50 5.64 -27.88 -0.16 -2.66 16 12 C 0.04 0.97 4.26 -27.88 -0.12 0.85 16 13 C -0.53 -14.79 9.11 -34.44 -0.31 -15.10 16 14 H 0.06 1.47 7.74 -52.49 -0.41 1.06 16 15 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 16 N -0.89 -27.23 13.29 55.43 0.74 -26.49 16 17 Si 0.89 21.50 29.54 -169.99 -5.02 16.48 16 18 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 19 H -0.29 -6.88 7.11 56.52 0.40 -6.47 16 20 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 21 C 0.12 1.50 11.11 -17.35 -0.19 1.31 16 22 N -0.53 -7.27 9.07 -12.25 -0.11 -7.38 16 23 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 24 H 0.07 0.39 8.07 -51.93 -0.42 -0.03 16 25 H 0.07 0.53 5.98 -51.93 -0.31 0.22 16 26 H 0.04 0.37 8.14 -51.93 -0.42 -0.05 16 27 H 0.06 0.38 8.07 -51.93 -0.42 -0.04 16 28 H 0.08 0.76 7.30 -51.93 -0.38 0.38 16 29 H 0.13 1.49 6.02 -52.49 -0.32 1.17 16 30 H 0.15 2.49 6.48 -52.48 -0.34 2.15 16 31 H 0.41 4.23 8.82 -40.82 -0.36 3.87 16 32 H 0.08 1.46 8.14 -51.93 -0.42 1.04 16 33 H 0.08 1.47 8.14 -51.93 -0.42 1.05 16 34 H 0.02 0.69 8.10 -51.93 -0.42 0.27 16 35 H 0.02 0.70 8.10 -51.92 -0.42 0.28 16 36 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 37 H 0.16 1.54 8.06 -52.48 -0.42 1.12 16 LS Contribution 314.92 15.07 4.75 4.75 Total: -1.00 -34.76 314.92 -7.41 -42.16 By element: Atomic # 1 Polarization: 6.01 SS G_CDS: -5.04 Total: 0.97 kcal Atomic # 6 Polarization: 0.32 SS G_CDS: -2.10 Total: -1.77 kcal Atomic # 7 Polarization: -50.81 SS G_CDS: -0.07 Total: -50.88 kcal Atomic # 8 Polarization: -11.78 SS G_CDS: 0.08 Total: -11.70 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.48 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -34.76 -7.41 -42.16 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292551279.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.618 kcal (2) G-P(sol) polarization free energy of solvation -34.758 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.860 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.405 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.163 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.455 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds