Wall clock time and date at job start Mon Mar 30 2020 04:23:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.46496 * 120.00299 * 2 1 4 4 C 1.39215 * 120.00218 * 179.97438 * 2 1 3 5 5 C 1.39118 * 119.62563 * 5.00210 * 4 2 1 6 6 C 1.38252 * 119.16618 * 179.97438 * 5 4 2 7 7 C 1.39409 * 118.44945 * 0.02562 * 6 5 4 8 8 N 1.40191 * 120.40563 * 179.97438 * 7 6 5 9 9 C 1.34776 * 119.99787 * 32.62566 * 8 7 6 10 10 O 1.21299 * 120.00258 * 5.26995 * 9 8 7 11 11 C 1.50706 * 119.99609 * 185.27033 * 9 8 7 12 12 C 1.52999 * 109.46738 * 179.97438 * 11 9 8 13 13 C 1.50705 * 109.47105 * 179.97438 * 12 11 9 14 14 H 1.07999 * 119.99617 * 0.02562 * 13 12 11 15 15 C 1.37873 * 120.00381 * 179.97438 * 13 12 11 16 16 N 1.31517 * 119.99887 * 0.02562 * 15 13 12 17 17 Si 1.86797 * 120.00416 * 180.02562 * 15 13 12 18 18 H 1.48501 * 109.46922 * 59.99967 * 17 15 13 19 19 H 1.48494 * 109.47344 * 180.02562 * 17 15 13 20 20 H 1.48501 * 109.47079 * 300.00679 * 17 15 13 21 21 C 1.38616 * 119.19087 * 359.97371 * 7 6 5 22 22 N 1.31966 * 120.76183 * 0.02765 * 21 7 6 23 23 H 1.09000 * 109.47229 * 270.00206 * 1 2 3 24 24 H 1.09006 * 109.46760 * 30.00046 * 1 2 3 25 25 H 1.08997 * 109.47474 * 149.99723 * 1 2 3 26 26 H 1.09001 * 109.47329 * 269.99940 * 3 2 1 27 27 H 1.09002 * 109.47423 * 29.99891 * 3 2 1 28 28 H 1.09000 * 109.47408 * 149.99870 * 3 2 1 29 29 H 1.08001 * 120.41450 * 0.02562 * 5 4 2 30 30 H 1.08007 * 120.77038 * 179.72934 * 6 5 4 31 31 H 0.96995 * 119.99863 * 212.63166 * 8 7 6 32 32 H 1.08995 * 109.46941 * 300.00006 * 11 9 8 33 33 H 1.09003 * 109.47329 * 60.00341 * 11 9 8 34 34 H 1.08995 * 109.47500 * 299.99775 * 12 11 9 35 35 H 1.09008 * 109.47277 * 60.00010 * 12 11 9 36 36 H 0.96998 * 120.00307 * 179.97438 * 16 15 13 37 37 H 1.08007 * 119.61648 * 180.02562 * 21 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.1611 -1.2056 0.0005 5 6 1.4617 -2.4036 -0.1044 6 6 2.1625 -3.5953 -0.1034 7 6 3.5517 -3.5486 0.0039 8 7 4.3031 -4.7322 0.0096 9 6 3.8851 -5.7991 -0.7000 10 8 2.9123 -5.7063 -1.4186 11 6 4.6265 -7.1074 -0.6006 12 6 3.9508 -8.1458 -1.4983 13 6 4.6925 -9.4540 -1.3995 14 1 5.5588 -9.5365 -0.7599 15 6 4.2644 -10.5457 -2.1246 16 7 3.2091 -10.4454 -2.9031 17 14 5.1833 -12.1674 -2.0015 18 1 5.1642 -12.6416 -0.5944 19 1 4.5276 -13.1753 -2.8729 20 1 6.5890 -11.9744 -2.4397 21 6 4.1810 -2.3177 0.1050 22 7 3.4807 -1.1992 0.1008 23 1 -0.3634 0.0000 1.0277 24 1 -0.3633 0.8900 -0.5139 25 1 -0.3634 -0.8899 -0.5138 26 1 2.3792 1.5833 -1.0277 27 1 1.6085 2.0284 0.5138 28 1 3.1499 1.1383 0.5138 29 1 0.3848 -2.4026 -0.1864 30 1 1.6455 -4.5405 -0.1792 31 1 5.1236 -4.7832 0.5243 32 1 5.6584 -6.9655 -0.9215 33 1 4.6117 -7.4559 0.4321 34 1 2.9190 -8.2876 -1.1770 35 1 3.9651 -7.7976 -2.5312 36 1 2.9082 -11.2133 -3.4135 37 1 5.2570 -2.2735 0.1880 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000292551279.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:23:40 Heat of formation + Delta-G solvation = -15.120112 kcal Electronic energy + Delta-G solvation = -18807.742475 eV Core-core repulsion = 15777.298847 eV Total energy + Delta-G solvation = -3030.443629 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.137 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.76759 -40.41131 -37.60064 -35.66703 -35.47321 -33.39017 -32.85927 -30.48874 -29.07661 -27.80084 -25.99327 -24.37558 -23.84990 -22.32079 -21.13459 -19.01729 -18.66707 -18.08784 -17.75724 -17.08686 -16.48283 -16.39309 -16.17830 -15.66151 -15.19499 -15.04751 -14.65777 -14.26231 -14.20555 -13.97815 -13.59216 -13.32839 -13.23862 -12.98272 -12.77594 -12.73887 -12.51176 -11.97485 -11.89418 -11.63413 -11.31761 -11.05822 -10.70428 -10.55081 -10.49369 -9.95845 -8.23364 -8.17030 -6.30950 0.21682 0.35526 1.43262 1.47498 1.55127 1.68727 1.96130 2.21755 2.45278 2.91769 3.16166 3.55892 3.88569 3.95971 4.01661 4.18971 4.33293 4.48413 4.52714 4.53889 4.56840 4.68663 4.82032 4.84845 4.91787 5.02168 5.07145 5.09156 5.33308 5.50916 5.64335 5.73635 5.86687 6.02145 6.18271 6.36918 6.52069 6.87519 7.09956 7.27027 7.39364 8.95339 Molecular weight = 263.14amu Principal moments of inertia in cm(-1) A = 0.056306 B = 0.003144 C = 0.003019 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 497.163586 B = 8902.970068 C = 9273.685567 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.090 3.910 2 N -0.625 5.625 3 C 0.100 3.900 4 C 0.372 3.628 5 C -0.223 4.223 6 C -0.055 4.055 7 C 0.027 3.973 8 N -0.652 5.652 9 C 0.511 3.489 10 O -0.570 6.570 11 C -0.116 4.116 12 C 0.042 3.958 13 C -0.543 4.543 14 H 0.078 0.922 15 C -0.007 4.007 16 N -0.938 5.938 17 Si 0.973 3.027 18 H -0.262 1.262 19 H -0.289 1.289 20 H -0.262 1.262 21 C 0.130 3.870 22 N -0.537 5.537 23 H 0.061 0.939 24 H 0.092 0.908 25 H 0.069 0.931 26 H 0.045 0.955 27 H 0.087 0.913 28 H 0.067 0.933 29 H 0.150 0.850 30 H 0.121 0.879 31 H 0.429 0.571 32 H 0.110 0.890 33 H 0.110 0.890 34 H -0.016 1.016 35 H -0.018 1.018 36 H 0.262 0.738 37 H 0.189 0.811 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.038 22.147 10.104 24.343 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 N -0.340 5.340 3 C -0.043 4.043 4 C 0.137 3.863 5 C -0.248 4.248 6 C -0.083 4.083 7 C -0.072 4.072 8 N -0.300 5.300 9 C 0.301 3.699 10 O -0.448 6.448 11 C -0.155 4.155 12 C 0.004 3.996 13 C -0.581 4.581 14 H 0.096 0.904 15 C -0.205 4.205 16 N -0.578 5.578 17 Si 0.797 3.203 18 H -0.187 1.187 19 H -0.215 1.215 20 H -0.187 1.187 21 C -0.030 4.030 22 N -0.254 5.254 23 H 0.080 0.920 24 H 0.110 0.890 25 H 0.087 0.913 26 H 0.064 0.936 27 H 0.105 0.895 28 H 0.086 0.914 29 H 0.167 0.833 30 H 0.139 0.861 31 H 0.268 0.732 32 H 0.129 0.871 33 H 0.128 0.872 34 H 0.002 0.998 35 H 0.001 0.999 36 H 0.071 0.929 37 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges -0.501 23.053 9.562 24.962 hybrid contribution -0.160 -1.897 -0.296 1.927 sum -0.661 21.155 9.266 23.105 Atomic orbital electron populations 1.21894 0.76954 1.04012 1.02405 1.46446 1.06094 1.02557 1.78917 1.21617 0.97558 0.83750 1.01362 1.18539 0.88584 0.86759 0.92369 1.21490 1.01940 0.90701 1.10697 1.21405 0.93363 0.98832 0.94655 1.18713 0.91527 0.87921 1.09008 1.43313 1.27512 1.10022 1.49185 1.21596 0.84372 0.86362 0.77607 1.90666 1.29487 1.84682 1.39938 1.21652 1.00659 0.89776 1.03458 1.18696 0.94531 0.92931 0.93455 1.21698 1.13646 0.96088 1.26665 0.90433 1.26130 0.95945 1.03626 0.94764 1.70170 1.26352 1.32063 1.29240 0.85385 0.78704 0.77708 0.78525 1.18668 1.21495 1.18690 1.22596 1.00668 0.84390 0.95302 1.67171 1.06559 1.30642 1.21031 0.92015 0.88953 0.91274 0.93628 0.89455 0.91436 0.83257 0.86112 0.73151 0.87147 0.87192 0.99794 0.99909 0.92898 0.79454 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.15 10.28 127.77 1.31 2.46 16 2 N -0.62 -12.17 3.40 -753.84 -2.56 -14.73 16 3 C 0.10 1.52 10.50 127.77 1.34 2.86 16 4 C 0.37 9.54 7.37 133.00 0.98 10.52 16 5 C -0.22 -6.01 9.27 22.48 0.21 -5.81 16 6 C -0.05 -1.74 8.75 22.56 0.20 -1.55 16 7 C 0.03 0.77 6.31 38.18 0.24 1.01 16 8 N -0.65 -17.84 5.36 -303.07 -1.62 -19.47 16 9 C 0.51 19.33 7.60 87.66 0.67 20.00 16 10 O -0.57 -27.35 13.67 -3.09 -0.04 -27.39 16 11 C -0.12 -4.45 5.64 29.85 0.17 -4.28 16 12 C 0.04 2.27 4.26 29.85 0.13 2.40 16 13 C -0.54 -30.50 9.11 25.60 0.23 -30.26 16 14 H 0.08 3.93 7.74 -2.91 -0.02 3.90 16 15 C -0.01 -0.42 5.46 84.65 0.46 0.04 16 16 N -0.94 -59.39 13.29 21.45 0.28 -59.11 16 17 Si 0.97 44.01 29.54 68.60 2.03 46.04 16 18 H -0.26 -11.17 7.11 99.48 0.71 -10.46 16 19 H -0.29 -13.05 7.11 99.48 0.71 -12.35 16 20 H -0.26 -11.19 7.11 99.48 0.71 -10.48 16 21 C 0.13 3.14 11.11 84.76 0.94 4.09 16 22 N -0.54 -14.00 9.07 -192.68 -1.75 -15.74 16 23 H 0.06 0.67 8.14 -2.39 -0.02 0.66 16 24 H 0.09 0.77 8.07 -2.38 -0.02 0.75 16 25 H 0.07 0.93 5.98 -2.39 -0.01 0.92 16 26 H 0.05 0.69 8.14 -2.39 -0.02 0.67 16 27 H 0.09 0.84 8.07 -2.39 -0.02 0.83 16 28 H 0.07 1.19 7.30 -2.39 -0.02 1.17 16 29 H 0.15 3.34 6.02 -2.91 -0.02 3.32 16 30 H 0.12 4.44 6.48 -2.91 -0.02 4.42 16 31 H 0.43 7.82 8.82 -92.71 -0.82 7.01 16 32 H 0.11 3.65 8.14 -2.39 -0.02 3.63 16 33 H 0.11 3.66 8.14 -2.39 -0.02 3.64 16 34 H -0.02 -1.01 8.10 -2.39 -0.02 -1.03 16 35 H -0.02 -1.09 8.10 -2.38 -0.02 -1.11 16 36 H 0.26 15.61 8.31 -92.71 -0.77 14.84 16 37 H 0.19 3.13 8.06 -2.91 -0.02 3.11 16 Total: -1.00 -78.98 314.92 3.48 -75.50 By element: Atomic # 1 Polarization: 13.17 SS G_CDS: 0.26 Total: 13.43 kcal Atomic # 6 Polarization: -5.40 SS G_CDS: 6.88 Total: 1.48 kcal Atomic # 7 Polarization: -103.41 SS G_CDS: -5.65 Total: -109.05 kcal Atomic # 8 Polarization: -27.35 SS G_CDS: -0.04 Total: -27.39 kcal Atomic # 14 Polarization: 44.01 SS G_CDS: 2.03 Total: 46.04 kcal Total: -78.98 3.48 -75.50 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292551279.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.382 kcal (2) G-P(sol) polarization free energy of solvation -78.983 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.601 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.481 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.502 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.120 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds