Wall clock time and date at job start Mon Mar 30 2020 04:30:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35512 * 117.00293 * 2 1 4 4 C 1.39441 * 120.46556 * 179.97438 * 3 2 1 5 5 C 1.38194 * 118.50486 * 180.02562 * 4 3 2 6 6 N 1.32469 * 119.26931 * 359.73528 * 5 4 3 7 7 C 1.32463 * 120.88718 * 0.53907 * 6 5 4 8 8 N 1.38395 * 119.18957 * 179.71672 * 7 6 5 9 9 C 1.46503 * 119.99429 * 359.73685 * 8 7 6 10 10 H 1.08994 * 110.06375 * 326.41231 * 9 8 7 11 11 C 1.53879 * 110.02989 * 87.83340 * 9 8 7 12 12 C 1.54467 * 106.68590 * 119.44114 * 11 9 8 13 13 C 1.54892 * 104.09928 * 23.33708 * 12 11 9 14 14 H 1.09000 * 110.75367 * 80.71380 * 13 12 11 15 15 C 1.50706 * 110.75410 * 203.89345 * 13 12 11 16 16 H 1.08005 * 119.99758 * 116.06837 * 15 13 12 17 17 C 1.37871 * 120.00102 * 296.06722 * 15 13 12 18 18 N 1.31516 * 120.00217 * 0.02562 * 17 15 13 19 19 Si 1.86800 * 119.99766 * 179.97438 * 17 15 13 20 20 H 1.48501 * 109.47483 * 269.99808 * 19 17 15 21 21 H 1.48499 * 109.47134 * 30.00322 * 19 17 15 22 22 H 1.48507 * 109.46904 * 150.00145 * 19 17 15 23 23 C 1.54265 * 110.02806 * 204.99514 * 9 8 7 24 24 N 1.32486 * 121.62498 * 359.44972 * 7 6 5 25 25 H 1.09006 * 109.46761 * 299.99281 * 1 2 3 26 26 H 1.09001 * 109.47195 * 59.98764 * 1 2 3 27 27 H 1.09001 * 109.47432 * 179.97438 * 1 2 3 28 28 H 1.07995 * 120.74674 * 0.02562 * 4 3 2 29 29 H 1.07997 * 120.36594 * 180.02562 * 5 4 3 30 30 H 0.96995 * 120.00539 * 179.73353 * 8 7 6 31 31 H 1.08995 * 110.02820 * 238.56060 * 11 9 8 32 32 H 1.08998 * 110.03629 * 359.97438 * 11 9 8 33 33 H 1.09004 * 110.40474 * 264.75755 * 12 11 9 34 34 H 1.08999 * 110.66617 * 142.04902 * 12 11 9 35 35 H 0.97001 * 119.99646 * 359.97438 * 18 17 15 36 36 H 1.09000 * 110.48486 * 98.43449 * 23 9 8 37 37 H 1.09004 * 110.49129 * 335.78302 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0443 1.2074 0.0000 4 6 3.4361 1.2916 0.0005 5 6 4.0211 2.5436 0.0011 6 7 3.2483 3.6196 -0.0043 7 6 1.9283 3.5087 0.0006 8 7 1.1546 4.6562 0.0007 9 6 1.7972 5.9728 0.0012 10 1 2.7275 5.9346 0.5679 11 6 2.0780 6.4229 -1.4432 12 6 1.2929 7.7355 -1.6593 13 6 1.0985 8.2986 -0.2295 14 1 1.9973 8.8147 0.1080 15 6 -0.0947 9.2176 -0.1751 16 1 -0.9481 8.9590 0.4343 17 6 -0.0969 10.3883 -0.9033 18 7 0.9420 10.7029 -1.6458 19 14 -1.5762 11.5270 -0.8364 20 1 -2.5379 11.1526 -1.9042 21 1 -2.2354 11.4048 0.4886 22 1 -1.1312 12.9291 -1.0405 23 6 0.8483 7.0236 0.6137 24 7 1.3304 2.3264 0.0001 25 1 -0.3633 0.5138 0.8901 26 1 -0.3633 0.5140 -0.8899 27 1 -0.3634 -1.0277 -0.0005 28 1 4.0433 0.3985 0.0005 29 1 5.0964 2.6438 0.0011 30 1 0.1870 4.5888 0.0003 31 1 3.1445 6.6031 -1.5775 32 1 1.7366 5.6616 -2.1446 33 1 0.3280 7.5294 -2.1225 34 1 1.8686 8.4322 -2.2686 35 1 1.7100 10.1114 -1.6807 36 1 1.1004 7.2020 1.6590 37 1 -0.1889 6.7018 0.5199 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000294917082.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:30:09 Heat of formation + Delta-G solvation = 5.973910 kcal Electronic energy + Delta-G solvation = -19422.043020 eV Core-core repulsion = 16392.514096 eV Total energy + Delta-G solvation = -3029.528923 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.137 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.06866 -38.79040 -37.74561 -34.65416 -33.10902 -32.21475 -30.32471 -28.20186 -27.58408 -26.66689 -23.96757 -23.63420 -22.95050 -19.88653 -19.53845 -18.55132 -17.96856 -16.87124 -16.31391 -16.14224 -15.36880 -15.26649 -14.79327 -14.35238 -14.23715 -13.74986 -13.66035 -12.96222 -12.51171 -12.18976 -12.12003 -11.93292 -11.41106 -10.97029 -10.88716 -10.73303 -10.49836 -10.44718 -10.11994 -10.07227 -9.76774 -9.53603 -9.42808 -9.18643 -8.47468 -8.32701 -7.89673 -6.31549 -4.04678 1.24331 1.32985 2.75804 3.12395 3.43585 3.46632 3.62308 3.96322 4.21368 4.53647 4.84294 4.91213 5.06883 5.11327 5.29944 5.35261 5.40157 5.40172 5.50330 5.55772 5.69978 6.00290 6.19051 6.34939 6.41357 6.56610 6.58879 6.71739 6.83703 6.88885 7.00775 7.13705 7.27774 7.36052 7.62057 7.66854 8.24460 8.44479 8.46010 8.90280 9.67309 11.06059 Molecular weight = 263.14amu Principal moments of inertia in cm(-1) A = 0.038701 B = 0.003881 C = 0.003651 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 723.313561 B = 7212.618592 C = 7667.406127 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.305 6.305 3 C 0.400 3.600 4 C -0.318 4.318 5 C 0.216 3.784 6 N -0.583 5.583 7 C 0.602 3.398 8 N -0.680 5.680 9 C 0.153 3.847 10 H 0.087 0.913 11 C -0.131 4.131 12 C -0.116 4.116 13 C 0.036 3.964 14 H 0.026 0.974 15 C -0.595 4.595 16 H 0.049 0.951 17 C 0.020 3.980 18 N -0.914 5.914 19 Si 1.068 2.932 20 H -0.289 1.289 21 H -0.290 1.290 22 H -0.285 1.285 23 C -0.114 4.114 24 N -0.631 5.631 25 H 0.060 0.940 26 H 0.061 0.939 27 H 0.096 0.904 28 H 0.144 0.856 29 H 0.171 0.829 30 H 0.410 0.590 31 H 0.059 0.941 32 H 0.051 0.949 33 H 0.053 0.947 34 H 0.058 0.942 35 H 0.273 0.727 36 H 0.055 0.945 37 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.830 -18.676 2.960 19.120 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.209 6.209 3 C 0.210 3.790 4 C -0.345 4.345 5 C 0.050 3.950 6 N -0.310 5.310 7 C 0.245 3.755 8 N -0.314 5.314 9 C 0.049 3.951 10 H 0.105 0.895 11 C -0.170 4.170 12 C -0.155 4.155 13 C 0.017 3.983 14 H 0.044 0.956 15 C -0.633 4.633 16 H 0.067 0.933 17 C -0.184 4.184 18 N -0.551 5.551 19 Si 0.897 3.103 20 H -0.216 1.216 21 H -0.216 1.216 22 H -0.211 1.211 23 C -0.153 4.153 24 N -0.371 5.371 25 H 0.079 0.921 26 H 0.079 0.921 27 H 0.115 0.885 28 H 0.162 0.838 29 H 0.188 0.812 30 H 0.248 0.752 31 H 0.077 0.923 32 H 0.069 0.931 33 H 0.072 0.928 34 H 0.076 0.924 35 H 0.085 0.915 36 H 0.074 0.926 37 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 1.830 -16.518 2.385 16.789 hybrid contribution 0.397 -2.313 0.504 2.400 sum 2.227 -18.830 2.889 19.181 Atomic orbital electron populations 1.22900 0.76971 1.02951 1.02856 1.86230 1.23217 1.24429 1.86994 1.19739 0.89230 0.83925 0.86060 1.21478 0.92352 1.00844 1.19865 1.22756 0.99998 0.86053 0.86179 1.68053 1.04038 1.33729 1.25202 1.19018 0.85652 0.84930 0.85904 1.44808 1.08165 1.02064 1.76319 1.21902 0.96800 0.79128 0.97263 0.89469 1.22639 1.00332 0.98683 0.95323 1.22619 0.98437 0.93721 1.00688 1.19707 0.97296 0.91190 0.90059 0.95638 1.21950 1.02635 1.07127 1.31584 0.93303 1.25753 1.02146 0.97311 0.93211 1.70770 1.06297 1.40172 1.37813 0.83551 0.74713 0.76180 0.75832 1.21576 1.21573 1.21055 1.22656 0.97808 0.95751 0.99045 1.67416 1.41406 0.98044 1.30210 0.92077 0.92061 0.88543 0.83800 0.81169 0.75211 0.92258 0.93065 0.92775 0.92382 0.91465 0.92603 0.91904 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.36 10.41 101.05 1.05 1.41 16 2 O -0.30 -3.67 10.49 -18.23 -0.19 -3.86 16 3 C 0.40 5.45 7.53 -16.71 -0.13 5.33 16 4 C -0.32 -3.72 10.12 -39.15 -0.40 -4.11 16 5 C 0.22 2.58 11.29 -17.29 -0.20 2.39 16 6 N -0.58 -9.00 9.19 -14.00 -0.13 -9.13 16 7 C 0.60 9.73 8.42 -322.87 -2.72 7.01 16 8 N -0.68 -11.03 5.13 -54.72 -0.28 -11.31 16 9 C 0.15 2.72 3.24 -66.81 -0.22 2.50 16 10 H 0.09 1.57 7.49 -51.93 -0.39 1.18 16 11 C -0.13 -2.47 6.60 -25.50 -0.17 -2.64 16 12 C -0.12 -2.61 5.62 -24.96 -0.14 -2.75 16 13 C 0.04 0.88 2.40 -89.77 -0.22 0.66 16 14 H 0.03 0.66 8.00 -51.93 -0.42 0.24 16 15 C -0.59 -16.24 8.52 -34.44 -0.29 -16.53 16 16 H 0.05 1.33 7.78 -52.48 -0.41 0.92 16 17 C 0.02 0.57 5.35 -17.82 -0.10 0.47 16 18 N -0.91 -26.99 13.45 55.43 0.75 -26.24 16 19 Si 1.07 24.89 29.90 -169.99 -5.08 19.81 16 20 H -0.29 -6.53 7.11 56.52 0.40 -6.13 16 21 H -0.29 -6.44 7.11 56.52 0.40 -6.04 16 22 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 23 C -0.11 -2.27 5.95 -25.07 -0.15 -2.42 16 24 N -0.63 -9.60 9.40 -13.99 -0.13 -9.73 16 25 H 0.06 0.59 8.12 -51.93 -0.42 0.17 16 26 H 0.06 0.60 8.12 -51.93 -0.42 0.18 16 27 H 0.10 0.61 8.14 -51.93 -0.42 0.18 16 28 H 0.14 1.29 8.06 -52.49 -0.42 0.87 16 29 H 0.17 1.37 8.06 -52.49 -0.42 0.95 16 30 H 0.41 6.28 8.47 -40.82 -0.35 5.93 16 31 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 32 H 0.05 0.95 7.92 -51.93 -0.41 0.54 16 33 H 0.05 1.28 8.04 -51.93 -0.42 0.86 16 34 H 0.06 1.39 6.47 -51.93 -0.34 1.05 16 35 H 0.27 7.94 5.40 -40.82 -0.22 7.72 16 36 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 37 H 0.06 1.24 7.64 -51.93 -0.40 0.84 16 LS Contribution 308.31 15.07 4.65 4.65 Total: -1.00 -30.79 308.31 -9.18 -39.97 By element: Atomic # 1 Polarization: 9.63 SS G_CDS: -5.09 Total: 4.54 kcal Atomic # 6 Polarization: -5.02 SS G_CDS: -3.66 Total: -8.69 kcal Atomic # 7 Polarization: -56.62 SS G_CDS: 0.20 Total: -56.42 kcal Atomic # 8 Polarization: -3.67 SS G_CDS: -0.19 Total: -3.86 kcal Atomic # 14 Polarization: 24.89 SS G_CDS: -5.08 Total: 19.81 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -30.79 -9.18 -39.97 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000294917082.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.941 kcal (2) G-P(sol) polarization free energy of solvation -30.787 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.154 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.180 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.967 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.974 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds