Wall clock time and date at job start Mon Mar 30 2020 04:30:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35512 * 117.00293 * 2 1 4 4 C 1.39441 * 120.46556 * 179.97438 * 3 2 1 5 5 C 1.38194 * 118.50486 * 180.02562 * 4 3 2 6 6 N 1.32469 * 119.26931 * 359.73528 * 5 4 3 7 7 C 1.32463 * 120.88718 * 0.53907 * 6 5 4 8 8 N 1.38395 * 119.18957 * 179.71672 * 7 6 5 9 9 C 1.46503 * 119.99429 * 359.73685 * 8 7 6 10 10 H 1.08994 * 110.06375 * 326.41231 * 9 8 7 11 11 C 1.53879 * 110.02989 * 87.83340 * 9 8 7 12 12 C 1.54467 * 106.68590 * 119.44114 * 11 9 8 13 13 C 1.54892 * 104.09928 * 23.33708 * 12 11 9 14 14 H 1.09000 * 110.75367 * 80.71380 * 13 12 11 15 15 C 1.50706 * 110.75410 * 203.89345 * 13 12 11 16 16 H 1.08005 * 119.99758 * 116.06837 * 15 13 12 17 17 C 1.37871 * 120.00102 * 296.06722 * 15 13 12 18 18 N 1.31516 * 120.00217 * 0.02562 * 17 15 13 19 19 Si 1.86800 * 119.99766 * 179.97438 * 17 15 13 20 20 H 1.48501 * 109.47483 * 269.99808 * 19 17 15 21 21 H 1.48499 * 109.47134 * 30.00322 * 19 17 15 22 22 H 1.48507 * 109.46904 * 150.00145 * 19 17 15 23 23 C 1.54265 * 110.02806 * 204.99514 * 9 8 7 24 24 N 1.32486 * 121.62498 * 359.44972 * 7 6 5 25 25 H 1.09006 * 109.46761 * 299.99281 * 1 2 3 26 26 H 1.09001 * 109.47195 * 59.98764 * 1 2 3 27 27 H 1.09001 * 109.47432 * 179.97438 * 1 2 3 28 28 H 1.07995 * 120.74674 * 0.02562 * 4 3 2 29 29 H 1.07997 * 120.36594 * 180.02562 * 5 4 3 30 30 H 0.96995 * 120.00539 * 179.73353 * 8 7 6 31 31 H 1.08995 * 110.02820 * 238.56060 * 11 9 8 32 32 H 1.08998 * 110.03629 * 359.97438 * 11 9 8 33 33 H 1.09004 * 110.40474 * 264.75755 * 12 11 9 34 34 H 1.08999 * 110.66617 * 142.04902 * 12 11 9 35 35 H 0.97001 * 119.99646 * 359.97438 * 18 17 15 36 36 H 1.09000 * 110.48486 * 98.43449 * 23 9 8 37 37 H 1.09004 * 110.49129 * 335.78302 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0443 1.2074 0.0000 4 6 3.4361 1.2916 0.0005 5 6 4.0211 2.5436 0.0011 6 7 3.2483 3.6196 -0.0043 7 6 1.9283 3.5087 0.0006 8 7 1.1546 4.6562 0.0007 9 6 1.7972 5.9728 0.0012 10 1 2.7275 5.9346 0.5679 11 6 2.0780 6.4229 -1.4432 12 6 1.2929 7.7355 -1.6593 13 6 1.0985 8.2986 -0.2295 14 1 1.9973 8.8147 0.1080 15 6 -0.0947 9.2176 -0.1751 16 1 -0.9481 8.9590 0.4343 17 6 -0.0969 10.3883 -0.9033 18 7 0.9420 10.7029 -1.6458 19 14 -1.5762 11.5270 -0.8364 20 1 -2.5379 11.1526 -1.9042 21 1 -2.2354 11.4048 0.4886 22 1 -1.1312 12.9291 -1.0405 23 6 0.8483 7.0236 0.6137 24 7 1.3304 2.3264 0.0001 25 1 -0.3633 0.5138 0.8901 26 1 -0.3633 0.5140 -0.8899 27 1 -0.3634 -1.0277 -0.0005 28 1 4.0433 0.3985 0.0005 29 1 5.0964 2.6438 0.0011 30 1 0.1870 4.5888 0.0003 31 1 3.1445 6.6031 -1.5775 32 1 1.7366 5.6616 -2.1446 33 1 0.3280 7.5294 -2.1225 34 1 1.8686 8.4322 -2.2686 35 1 1.7100 10.1114 -1.6807 36 1 1.1004 7.2020 1.6590 37 1 -0.1889 6.7018 0.5199 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000294917082.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:30:09 Heat of formation + Delta-G solvation = -12.695352 kcal Electronic energy + Delta-G solvation = -19422.852580 eV Core-core repulsion = 16392.514096 eV Total energy + Delta-G solvation = -3030.338483 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.137 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -42.10323 -39.94036 -39.12920 -36.14636 -34.39347 -33.80659 -31.49689 -29.95788 -28.50718 -28.17713 -25.81906 -24.72150 -24.13315 -21.55551 -21.11134 -19.69082 -19.10013 -18.81886 -17.39932 -17.18965 -16.74148 -16.24547 -16.07603 -15.64894 -15.47432 -15.43386 -14.76534 -14.57430 -14.17611 -13.96559 -13.18026 -12.92785 -12.83599 -12.60880 -12.49544 -12.31860 -11.93484 -11.85355 -11.73851 -11.59023 -11.55297 -11.28814 -10.60935 -10.52155 -10.42183 -10.26323 -9.05211 -8.52851 -6.26892 0.25423 0.29024 1.54882 1.62932 1.72149 1.80219 2.10524 2.60282 2.90829 3.24538 3.24679 3.67972 3.85664 3.91669 4.04275 4.11822 4.36444 4.38249 4.45288 4.54853 4.57703 4.67177 4.71548 4.75856 4.90263 4.96517 4.97433 5.11106 5.17060 5.36786 5.46578 5.68800 5.81114 5.98477 6.14567 6.17429 6.29228 6.49183 6.71431 7.34971 7.52963 8.85202 Molecular weight = 263.14amu Principal moments of inertia in cm(-1) A = 0.038701 B = 0.003881 C = 0.003651 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 723.313561 B = 7212.618592 C = 7667.406127 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.307 6.307 3 C 0.380 3.620 4 C -0.305 4.305 5 C 0.212 3.788 6 N -0.606 5.606 7 C 0.586 3.414 8 N -0.684 5.684 9 C 0.174 3.826 10 H 0.090 0.910 11 C -0.116 4.116 12 C -0.106 4.106 13 C 0.025 3.975 14 H 0.003 0.997 15 C -0.607 4.607 16 H 0.046 0.954 17 C -0.030 4.030 18 N -0.941 5.941 19 Si 1.113 2.887 20 H -0.277 1.277 21 H -0.272 1.272 22 H -0.286 1.286 23 C -0.103 4.103 24 N -0.642 5.642 25 H 0.055 0.945 26 H 0.053 0.947 27 H 0.129 0.871 28 H 0.175 0.825 29 H 0.211 0.789 30 H 0.413 0.587 31 H 0.066 0.934 32 H 0.056 0.944 33 H 0.037 0.963 34 H 0.036 0.964 35 H 0.264 0.736 36 H 0.062 0.938 37 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.023 -20.628 3.448 21.131 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.211 6.211 3 C 0.192 3.808 4 C -0.332 4.332 5 C 0.048 3.952 6 N -0.334 5.334 7 C 0.229 3.771 8 N -0.320 5.320 9 C 0.069 3.931 10 H 0.108 0.892 11 C -0.155 4.155 12 C -0.145 4.145 13 C 0.006 3.994 14 H 0.021 0.979 15 C -0.645 4.645 16 H 0.064 0.936 17 C -0.229 4.229 18 N -0.579 5.579 19 Si 0.936 3.064 20 H -0.203 1.203 21 H -0.197 1.197 22 H -0.211 1.211 23 C -0.142 4.142 24 N -0.383 5.383 25 H 0.074 0.926 26 H 0.072 0.928 27 H 0.147 0.853 28 H 0.192 0.808 29 H 0.227 0.773 30 H 0.250 0.750 31 H 0.085 0.915 32 H 0.074 0.926 33 H 0.056 0.944 34 H 0.055 0.945 35 H 0.075 0.925 36 H 0.081 0.919 37 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 2.040 -18.543 2.883 18.876 hybrid contribution 0.382 -1.842 0.371 1.918 sum 2.422 -20.385 3.254 20.785 Atomic orbital electron populations 1.23097 0.75704 1.04945 1.02184 1.86240 1.24487 1.23584 1.86803 1.20173 0.90263 0.83949 0.86398 1.21886 0.91821 1.01989 1.17465 1.23461 1.01503 0.85343 0.84851 1.68075 1.03905 1.35469 1.25926 1.19086 0.86099 0.84990 0.86901 1.44533 1.08228 1.01614 1.77579 1.21473 0.96216 0.79511 0.95911 0.89198 1.22502 1.00036 0.96562 0.96445 1.22392 0.97783 0.95166 0.99135 1.19704 0.95269 0.92549 0.91911 0.97902 1.22346 1.03429 1.07786 1.30928 0.93581 1.27111 1.03871 0.99197 0.92692 1.70873 1.06942 1.40563 1.39494 0.82973 0.72165 0.74296 0.76984 1.20280 1.19723 1.21147 1.22477 0.98523 0.94388 0.98777 1.67354 1.42090 0.98275 1.30568 0.92645 0.92812 0.85257 0.80760 0.77294 0.74964 0.91535 0.92550 0.94420 0.94534 0.92467 0.91932 0.91776 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.60 10.41 113.37 1.18 1.78 16 2 O -0.31 -6.76 10.49 -88.15 -0.92 -7.68 16 3 C 0.38 9.63 7.53 84.85 0.64 10.27 16 4 C -0.31 -6.19 10.12 22.55 0.23 -5.96 16 5 C 0.21 4.44 11.29 84.59 0.95 5.39 16 6 N -0.61 -17.53 9.19 -198.22 -1.82 -19.35 16 7 C 0.59 18.22 8.42 261.51 2.20 20.42 16 8 N -0.68 -21.64 5.13 -327.02 -1.68 -23.32 16 9 C 0.17 6.06 3.24 45.72 0.15 6.20 16 10 H 0.09 3.13 7.49 -2.39 -0.02 3.11 16 11 C -0.12 -4.35 6.60 31.39 0.21 -4.15 16 12 C -0.11 -4.90 5.62 31.74 0.18 -4.72 16 13 C 0.02 1.21 2.40 -10.25 -0.02 1.18 16 14 H 0.00 0.15 8.00 -2.39 -0.02 0.13 16 15 C -0.61 -33.60 8.52 25.60 0.22 -33.38 16 16 H 0.05 2.51 7.78 -2.91 -0.02 2.49 16 17 C -0.03 -1.71 5.35 84.65 0.45 -1.26 16 18 N -0.94 -56.84 13.45 21.45 0.29 -56.56 16 19 Si 1.11 50.13 29.90 68.60 2.05 52.18 16 20 H -0.28 -11.86 7.11 99.48 0.71 -11.15 16 21 H -0.27 -11.38 7.11 99.48 0.71 -10.67 16 22 H -0.29 -12.84 7.11 99.48 0.71 -12.13 16 23 C -0.10 -4.09 5.95 31.67 0.19 -3.91 16 24 N -0.64 -18.78 9.40 -310.88 -2.92 -21.70 16 25 H 0.05 1.00 8.12 -2.38 -0.02 0.98 16 26 H 0.05 0.99 8.12 -2.39 -0.02 0.97 16 27 H 0.13 1.29 8.14 -2.39 -0.02 1.27 16 28 H 0.17 2.40 8.06 -2.91 -0.02 2.37 16 29 H 0.21 2.51 8.06 -2.91 -0.02 2.48 16 30 H 0.41 12.40 8.47 -92.71 -0.79 11.62 16 31 H 0.07 2.39 8.14 -2.39 -0.02 2.37 16 32 H 0.06 2.05 7.92 -2.39 -0.02 2.03 16 33 H 0.04 1.82 8.04 -2.38 -0.02 1.80 16 34 H 0.04 1.81 6.47 -2.39 -0.02 1.79 16 35 H 0.26 15.93 5.40 -92.71 -0.50 15.43 16 36 H 0.06 2.37 8.14 -2.39 -0.02 2.35 16 37 H 0.06 2.51 7.64 -2.39 -0.02 2.49 16 Total: -1.00 -66.93 308.31 2.13 -64.80 By element: Atomic # 1 Polarization: 19.18 SS G_CDS: 0.56 Total: 19.74 kcal Atomic # 6 Polarization: -14.70 SS G_CDS: 6.57 Total: -8.13 kcal Atomic # 7 Polarization: -114.79 SS G_CDS: -6.13 Total: -120.92 kcal Atomic # 8 Polarization: -6.76 SS G_CDS: -0.92 Total: -7.68 kcal Atomic # 14 Polarization: 50.13 SS G_CDS: 2.05 Total: 52.18 kcal Total: -66.93 2.13 -64.80 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000294917082.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.105 kcal (2) G-P(sol) polarization free energy of solvation -66.926 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.821 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.125 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.801 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.695 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds