Wall clock time and date at job start Mon Mar 30 2020 04:50:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86804 * 119.99852 * 2 1 4 4 H 1.48508 * 109.46901 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.47129 * 299.99424 * 3 2 1 6 6 H 1.48499 * 109.47618 * 60.00055 * 3 2 1 7 7 C 1.37873 * 120.00162 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00149 * 172.50437 * 7 2 1 9 9 C 1.50703 * 119.99917 * 352.50675 * 7 2 1 10 10 C 1.53003 * 115.54810 * 85.06303 * 9 7 2 11 11 O 1.42903 * 109.47020 * 65.07418 * 10 9 7 12 12 C 1.43044 * 113.99690 * 184.58379 * 11 10 9 13 13 H 1.08772 * 109.19826 * 326.76945 * 12 11 10 14 14 C 1.56906 * 109.21864 * 87.26384 * 12 11 10 15 15 H 1.09593 * 114.73366 * 353.02922 * 14 12 11 16 16 N 1.51499 * 107.20641 * 224.84774 * 14 12 11 17 17 C 1.52144 * 109.39803 * 262.83964 * 16 14 12 18 18 C 1.50718 * 90.64053 * 30.48987 * 17 16 14 19 19 H 1.11736 * 77.23302 * 26.66255 * 18 17 16 20 20 C 1.47212 * 143.99423 * 95.10859 * 18 17 16 21 21 C 1.57312 * 109.24964 * 206.57442 * 12 11 10 22 22 H 1.09129 * 117.17088 * 40.68564 * 21 12 11 23 23 C 1.58491 * 97.50060 * 274.29643 * 21 12 11 24 24 C 1.56201 * 98.56289 * 308.28021 * 23 21 12 25 25 H 1.09139 * 119.49256 * 189.56114 * 24 23 21 26 26 C 1.52999 * 117.49757 * 230.73310 * 9 7 2 27 27 C 1.52991 * 117.49627 * 299.39296 * 9 7 2 28 28 H 0.97001 * 119.99917 * 5.02828 * 1 2 3 29 29 H 1.09005 * 109.46550 * 185.07314 * 10 9 7 30 30 H 1.09000 * 109.46948 * 305.07481 * 10 9 7 31 31 H 0.99922 * 112.99648 * 27.90967 * 16 14 12 32 32 H 1.07814 * 112.04253 * 276.22227 * 17 16 14 33 33 H 1.07834 * 111.99400 * 144.74171 * 17 16 14 34 34 H 1.09244 * 112.38265 * 351.69064 * 20 18 17 35 35 H 1.09239 * 112.39959 * 117.75769 * 20 18 17 36 36 H 1.09059 * 111.41110 * 190.74676 * 23 21 12 37 37 H 1.09022 * 111.49480 * 65.91424 * 23 21 12 38 38 H 1.08997 * 117.49390 * 215.00192 * 26 9 7 39 39 H 1.08995 * 117.50058 * 0.02562 * 26 9 7 40 40 H 1.08997 * 117.50266 * 359.97438 * 27 9 7 41 41 H 1.09000 * 117.50148 * 144.99895 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8905 2.3964 -1.2126 6 1 1.8904 2.3966 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0777 -1.1980 -0.1215 9 6 1.2607 -2.4935 0.1713 10 6 0.6772 -3.0931 -1.1097 11 8 1.7405 -3.4616 -1.9904 12 6 1.3010 -3.9393 -3.2651 13 1 0.3590 -4.4692 -3.1431 14 6 1.1139 -2.7214 -4.2366 15 1 1.2247 -1.7380 -3.7657 16 7 -0.2017 -2.9233 -4.9601 17 6 0.0607 -3.5545 -6.3193 18 6 1.2741 -4.2635 -5.7747 19 1 0.6372 -4.1306 -4.8662 20 6 1.7539 -5.5290 -5.1955 21 6 2.3878 -4.9099 -3.8581 22 1 2.8650 -5.6059 -3.1662 23 6 3.3010 -3.8074 -4.5380 24 6 2.1965 -3.0592 -5.3505 25 1 2.4872 -2.3066 -6.0855 26 6 1.7714 -3.4650 1.2373 27 6 0.4712 -2.6905 1.4669 28 1 -0.4850 0.8368 -0.0736 29 1 0.0881 -3.9761 -0.8619 30 1 0.0397 -2.3562 -1.5982 31 1 -0.8621 -3.4526 -4.4289 32 1 0.3201 -2.8190 -7.0637 33 1 -0.7193 -4.2433 -6.6021 34 1 0.9378 -6.2198 -4.9714 35 1 2.5137 -6.0093 -5.8163 36 1 4.0492 -4.2577 -5.1913 37 1 3.7663 -3.1600 -3.7944 38 1 1.6917 -4.5313 1.0259 39 1 2.6451 -3.1641 1.8153 40 1 0.4901 -1.8804 2.1960 41 1 -0.4639 -3.2473 1.4068 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000310104903.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:50:08 Heat of formation + Delta-G solvation = 165.569118 kcal Electronic energy + Delta-G solvation = -21098.245746 eV Core-core repulsion = 18179.177733 eV Total energy + Delta-G solvation = -2919.068012 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -42.98634 -37.31682 -35.47111 -34.04330 -31.89011 -29.67556 -28.13468 -26.30371 -25.85440 -25.14739 -23.99678 -21.08806 -20.18861 -19.97883 -19.16407 -18.66763 -16.28778 -16.14451 -15.63461 -15.17011 -15.01102 -14.63679 -14.13377 -13.74825 -13.48527 -13.01916 -12.72777 -12.65694 -12.04111 -11.91172 -11.40998 -11.34076 -11.22957 -11.03736 -10.95148 -10.74067 -10.71371 -10.43679 -10.26658 -10.09962 -10.01372 -9.46483 -9.24379 -8.84736 -8.52867 -8.40332 -8.08753 -7.60499 -5.99856 -4.03675 3.30796 3.39288 3.43996 3.46825 3.73936 4.23393 4.43970 4.45620 4.59975 4.85450 5.02445 5.14045 5.23374 5.28856 5.38114 5.43527 5.55827 5.56241 5.59723 5.74091 5.94529 5.97404 6.09967 6.14010 6.20371 6.28854 6.32794 6.38834 6.42432 6.50270 6.53506 6.65149 6.71713 6.73238 6.80545 7.07921 7.36972 7.44833 7.51908 7.93502 8.12328 8.49683 8.96974 9.60639 11.08851 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.021540 B = 0.006563 C = 0.005900 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1299.596473 B = 4265.114371 C = 4744.306419 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.883 5.883 2 C 0.069 3.931 3 Si 0.888 3.112 4 H -0.272 1.272 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.482 4.482 8 H 0.061 0.939 9 C 0.047 3.953 10 C 0.107 3.893 11 O -0.359 6.359 12 C 0.064 3.936 13 H 0.043 0.957 14 C 0.069 3.931 15 H 0.122 0.878 16 N -0.732 5.732 17 C 0.128 3.872 18 C -0.340 4.340 19 H 0.118 0.882 20 C -0.037 4.037 21 C -0.105 4.105 22 H 0.115 0.885 23 C -0.113 4.113 24 C -0.093 4.093 25 H 0.114 0.886 26 C -0.206 4.206 27 C -0.154 4.154 28 H 0.259 0.741 29 H 0.010 0.990 30 H 0.056 0.944 31 H 0.345 0.655 32 H 0.092 0.908 33 H 0.078 0.922 34 H 0.062 0.938 35 H 0.065 0.935 36 H 0.066 0.934 37 H 0.079 0.921 38 H 0.064 0.936 39 H 0.077 0.923 40 H 0.084 0.916 41 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.032 -9.342 -10.375 13.999 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.521 5.521 2 C -0.133 4.133 3 Si 0.716 3.284 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.520 4.520 8 H 0.079 0.921 9 C 0.047 3.953 10 C 0.031 3.969 11 O -0.277 6.277 12 C 0.003 3.997 13 H 0.061 0.939 14 C -0.037 4.037 15 H 0.139 0.861 16 N -0.371 5.371 17 C 0.002 3.998 18 C -0.360 4.360 19 H 0.134 0.866 20 C -0.075 4.075 21 C -0.123 4.123 22 H 0.133 0.867 23 C -0.151 4.151 24 C -0.111 4.111 25 H 0.132 0.868 26 C -0.244 4.244 27 C -0.191 4.191 28 H 0.069 0.931 29 H 0.028 0.972 30 H 0.074 0.926 31 H 0.167 0.833 32 H 0.111 0.889 33 H 0.097 0.903 34 H 0.080 0.920 35 H 0.084 0.916 36 H 0.085 0.915 37 H 0.098 0.902 38 H 0.082 0.918 39 H 0.096 0.904 40 H 0.102 0.898 41 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 0.939 -8.512 -10.322 13.412 hybrid contribution -0.029 0.107 0.395 0.411 sum 0.910 -8.406 -9.926 13.039 Atomic orbital electron populations 1.69978 1.05838 1.26579 1.49673 1.24974 0.94808 0.98840 0.94702 0.86592 0.80369 0.83887 0.77544 1.19674 1.21046 1.21037 1.20406 0.93307 0.88392 1.49876 0.92060 1.18717 0.97923 0.93931 0.84774 1.22240 0.88291 0.94964 0.91383 1.88024 1.33172 1.83732 1.22753 1.24596 0.95933 0.93037 0.86100 0.93927 1.26149 0.85417 0.99055 0.93130 0.86065 1.61693 1.12887 1.57956 1.04521 1.22007 0.93182 0.94647 0.89992 1.25170 1.00680 0.96472 1.13668 0.86594 1.21223 0.99448 0.93226 0.93583 1.25165 0.96537 0.95634 0.94972 0.86711 1.23463 0.96437 0.96859 0.98343 1.24656 0.93891 0.96265 0.96303 0.86796 1.22959 0.97991 0.95711 1.07714 1.22533 0.92485 1.01260 1.02846 0.93118 0.97177 0.92571 0.83267 0.88938 0.90331 0.91959 0.91593 0.91519 0.90212 0.91765 0.90394 0.89778 0.92004 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.05 12.96 55.43 0.72 -24.34 16 2 C 0.07 1.91 5.38 -17.82 -0.10 1.82 16 3 Si 0.89 21.44 29.55 -169.99 -5.02 16.42 16 4 H -0.27 -6.52 7.11 56.52 0.40 -6.11 16 5 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 6 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 7 C -0.48 -13.37 8.76 -34.44 -0.30 -13.67 16 8 H 0.06 1.74 7.83 -52.48 -0.41 1.33 16 9 C 0.05 1.18 1.59 -155.66 -0.25 0.94 16 10 C 0.11 2.48 5.55 37.16 0.21 2.69 16 11 O -0.36 -7.70 9.93 -35.23 -0.35 -8.05 16 12 C 0.06 1.09 2.00 -22.27 -0.04 1.04 16 13 H 0.04 0.71 6.78 -52.06 -0.35 0.36 16 14 C 0.07 1.16 4.91 -59.67 -0.29 0.87 16 15 H 0.12 2.48 8.18 -51.59 -0.42 2.06 16 16 N -0.73 -10.96 7.03 -150.81 -1.06 -12.02 16 17 C 0.13 1.54 8.22 -1.97 -0.02 1.52 16 18 C -0.34 -4.38 5.71 -92.08 -0.53 -4.90 16 19 H 0.12 1.62 0.94 -197.94 -0.19 1.43 16 20 C -0.04 -0.44 6.58 -25.30 -0.17 -0.61 16 21 C -0.10 -1.49 5.35 -81.03 -0.43 -1.92 16 22 H 0.11 1.57 8.15 -51.86 -0.42 1.15 16 23 C -0.11 -1.62 6.29 -21.98 -0.14 -1.76 16 24 C -0.09 -1.33 5.62 -83.12 -0.47 -1.80 16 25 H 0.11 1.53 8.15 -51.85 -0.42 1.11 16 26 C -0.21 -4.66 9.96 -26.69 -0.27 -4.92 16 27 C -0.15 -3.66 9.47 -26.70 -0.25 -3.91 16 28 H 0.26 7.05 8.32 -40.82 -0.34 6.71 16 29 H 0.01 0.22 8.09 -51.93 -0.42 -0.20 16 30 H 0.06 1.41 8.07 -51.93 -0.42 0.99 16 31 H 0.34 4.96 7.82 -39.69 -0.31 4.65 16 32 H 0.09 1.06 7.95 -52.59 -0.42 0.64 16 33 H 0.08 0.78 8.04 -52.58 -0.42 0.36 16 34 H 0.06 0.68 8.16 -51.79 -0.42 0.26 16 35 H 0.07 0.71 8.16 -51.79 -0.42 0.29 16 36 H 0.07 0.83 8.14 -51.90 -0.42 0.41 16 37 H 0.08 1.30 8.14 -51.92 -0.42 0.88 16 38 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 39 H 0.08 1.74 8.14 -51.93 -0.42 1.31 16 40 H 0.08 2.11 8.14 -51.93 -0.42 1.69 16 41 H 0.06 1.37 8.14 -51.93 -0.42 0.95 16 LS Contribution 319.68 15.07 4.82 4.82 Total: -1.00 -28.83 319.68 -10.66 -39.49 By element: Atomic # 1 Polarization: 15.03 SS G_CDS: -6.73 Total: 8.31 kcal Atomic # 6 Polarization: -21.58 SS G_CDS: -3.04 Total: -24.62 kcal Atomic # 7 Polarization: -36.02 SS G_CDS: -0.34 Total: -36.36 kcal Atomic # 8 Polarization: -7.70 SS G_CDS: -0.35 Total: -8.05 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.42 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -28.83 -10.66 -39.49 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000310104903.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 205.063 kcal (2) G-P(sol) polarization free energy of solvation -28.829 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 176.234 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.665 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.494 kcal (6) G-S(sol) free energy of system = (1) + (5) 165.569 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds