Wall clock time and date at job start Mon Mar 30 2020 04:50:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86804 * 119.99852 * 2 1 4 4 H 1.48508 * 109.46901 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.47129 * 299.99424 * 3 2 1 6 6 H 1.48499 * 109.47618 * 60.00055 * 3 2 1 7 7 C 1.37873 * 120.00162 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00149 * 172.50437 * 7 2 1 9 9 C 1.50703 * 119.99917 * 352.50675 * 7 2 1 10 10 C 1.53003 * 115.54810 * 85.06303 * 9 7 2 11 11 O 1.42903 * 109.47020 * 65.07418 * 10 9 7 12 12 C 1.43044 * 113.99690 * 184.58379 * 11 10 9 13 13 H 1.08772 * 109.19826 * 326.76945 * 12 11 10 14 14 C 1.56906 * 109.21864 * 87.26384 * 12 11 10 15 15 H 1.09593 * 114.73366 * 353.02922 * 14 12 11 16 16 N 1.51499 * 107.20641 * 224.84774 * 14 12 11 17 17 C 1.52144 * 109.39803 * 262.83964 * 16 14 12 18 18 C 1.50718 * 90.64053 * 30.48987 * 17 16 14 19 19 H 1.11736 * 77.23302 * 26.66255 * 18 17 16 20 20 C 1.47212 * 143.99423 * 95.10859 * 18 17 16 21 21 C 1.57312 * 109.24964 * 206.57442 * 12 11 10 22 22 H 1.09129 * 117.17088 * 40.68564 * 21 12 11 23 23 C 1.58491 * 97.50060 * 274.29643 * 21 12 11 24 24 C 1.56201 * 98.56289 * 308.28021 * 23 21 12 25 25 H 1.09139 * 119.49256 * 189.56114 * 24 23 21 26 26 C 1.52999 * 117.49757 * 230.73310 * 9 7 2 27 27 C 1.52991 * 117.49627 * 299.39296 * 9 7 2 28 28 H 0.97001 * 119.99917 * 5.02828 * 1 2 3 29 29 H 1.09005 * 109.46550 * 185.07314 * 10 9 7 30 30 H 1.09000 * 109.46948 * 305.07481 * 10 9 7 31 31 H 0.99922 * 112.99648 * 27.90967 * 16 14 12 32 32 H 1.07814 * 112.04253 * 276.22227 * 17 16 14 33 33 H 1.07834 * 111.99400 * 144.74171 * 17 16 14 34 34 H 1.09244 * 112.38265 * 351.69064 * 20 18 17 35 35 H 1.09239 * 112.39959 * 117.75769 * 20 18 17 36 36 H 1.09059 * 111.41110 * 190.74676 * 23 21 12 37 37 H 1.09022 * 111.49480 * 65.91424 * 23 21 12 38 38 H 1.08997 * 117.49390 * 215.00192 * 26 9 7 39 39 H 1.08995 * 117.50058 * 0.02562 * 26 9 7 40 40 H 1.08997 * 117.50266 * 359.97438 * 27 9 7 41 41 H 1.09000 * 117.50148 * 144.99895 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8905 2.3964 -1.2126 6 1 1.8904 2.3966 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0777 -1.1980 -0.1215 9 6 1.2607 -2.4935 0.1713 10 6 0.6772 -3.0931 -1.1097 11 8 1.7405 -3.4616 -1.9904 12 6 1.3010 -3.9393 -3.2651 13 1 0.3590 -4.4692 -3.1431 14 6 1.1139 -2.7214 -4.2366 15 1 1.2247 -1.7380 -3.7657 16 7 -0.2017 -2.9233 -4.9601 17 6 0.0607 -3.5545 -6.3193 18 6 1.2741 -4.2635 -5.7747 19 1 0.6372 -4.1306 -4.8662 20 6 1.7539 -5.5290 -5.1955 21 6 2.3878 -4.9099 -3.8581 22 1 2.8650 -5.6059 -3.1662 23 6 3.3010 -3.8074 -4.5380 24 6 2.1965 -3.0592 -5.3505 25 1 2.4872 -2.3066 -6.0855 26 6 1.7714 -3.4650 1.2373 27 6 0.4712 -2.6905 1.4669 28 1 -0.4850 0.8368 -0.0736 29 1 0.0881 -3.9761 -0.8619 30 1 0.0397 -2.3562 -1.5982 31 1 -0.8621 -3.4526 -4.4289 32 1 0.3201 -2.8190 -7.0637 33 1 -0.7193 -4.2433 -6.6021 34 1 0.9378 -6.2198 -4.9714 35 1 2.5137 -6.0093 -5.8163 36 1 4.0492 -4.2577 -5.1913 37 1 3.7663 -3.1600 -3.7944 38 1 1.6917 -4.5313 1.0259 39 1 2.6451 -3.1641 1.8153 40 1 0.4901 -1.8804 2.1960 41 1 -0.4639 -3.2473 1.4068 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000310104903.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:50:08 Heat of formation + Delta-G solvation = 147.430527 kcal Electronic energy + Delta-G solvation = -21099.032294 eV Core-core repulsion = 18179.177733 eV Total energy + Delta-G solvation = -2919.854561 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -44.13581 -39.09175 -37.17391 -35.20530 -34.01109 -30.81557 -29.38136 -28.08746 -27.10617 -26.98612 -25.30195 -22.95781 -21.44762 -21.16630 -21.01302 -19.85438 -18.23523 -17.45058 -17.03497 -16.74971 -16.42602 -16.12116 -15.85622 -15.36172 -14.92849 -14.26842 -14.22971 -14.04551 -13.66537 -13.15331 -13.09156 -12.91566 -12.83294 -12.51963 -12.45163 -12.37741 -12.19251 -12.08004 -11.88597 -11.39636 -11.37882 -11.17739 -10.87386 -10.49402 -10.46760 -10.10437 -9.87917 -8.71265 -8.12753 -6.22111 1.35757 1.38422 1.49427 2.39778 2.39940 2.50675 2.95588 3.14835 3.28635 3.33711 3.53402 3.67038 3.85402 3.93266 4.13096 4.20660 4.25215 4.40097 4.47219 4.52782 4.58459 4.59904 4.70980 4.81837 4.83644 4.87556 4.94468 4.95312 5.03178 5.09672 5.14499 5.18379 5.21636 5.36715 5.44453 5.57234 5.58298 5.60737 5.75800 6.23648 6.37224 6.54888 6.80866 7.44518 8.95148 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.021540 B = 0.006563 C = 0.005900 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1299.596473 B = 4265.114371 C = 4744.306419 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.907 5.907 2 C 0.026 3.974 3 Si 0.945 3.055 4 H -0.270 1.270 5 H -0.282 1.282 6 H -0.277 1.277 7 C -0.498 4.498 8 H 0.045 0.955 9 C 0.012 3.988 10 C 0.125 3.875 11 O -0.379 6.379 12 C 0.060 3.940 13 H 0.047 0.953 14 C 0.059 3.941 15 H 0.069 0.931 16 N -0.745 5.745 17 C 0.137 3.863 18 C -0.321 4.321 19 H 0.104 0.896 20 C -0.024 4.024 21 C -0.104 4.104 22 H 0.122 0.878 23 C -0.113 4.113 24 C -0.094 4.094 25 H 0.121 0.879 26 C -0.183 4.183 27 C -0.153 4.153 28 H 0.259 0.741 29 H 0.027 0.973 30 H 0.023 0.977 31 H 0.346 0.654 32 H 0.098 0.902 33 H 0.107 0.893 34 H 0.080 0.920 35 H 0.089 0.911 36 H 0.093 0.907 37 H 0.048 0.952 38 H 0.089 0.911 39 H 0.077 0.923 40 H 0.064 0.936 41 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.325 -11.200 -11.901 16.396 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.174 4.174 3 Si 0.771 3.229 4 H -0.194 1.194 5 H -0.208 1.208 6 H -0.203 1.203 7 C -0.536 4.536 8 H 0.063 0.937 9 C 0.011 3.989 10 C 0.049 3.951 11 O -0.298 6.298 12 C 0.001 3.999 13 H 0.065 0.935 14 C -0.048 4.048 15 H 0.087 0.913 16 N -0.384 5.384 17 C 0.011 3.989 18 C -0.341 4.341 19 H 0.121 0.879 20 C -0.062 4.062 21 C -0.122 4.122 22 H 0.140 0.860 23 C -0.150 4.150 24 C -0.113 4.113 25 H 0.139 0.861 26 C -0.220 4.220 27 C -0.191 4.191 28 H 0.069 0.931 29 H 0.045 0.955 30 H 0.041 0.959 31 H 0.169 0.831 32 H 0.117 0.883 33 H 0.125 0.875 34 H 0.098 0.902 35 H 0.107 0.893 36 H 0.111 0.889 37 H 0.067 0.933 38 H 0.108 0.892 39 H 0.096 0.904 40 H 0.082 0.918 41 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 1.235 -10.381 -11.857 15.807 hybrid contribution -0.114 0.698 0.851 1.107 sum 1.121 -9.683 -11.006 14.702 Atomic orbital electron populations 1.70069 1.06861 1.27180 1.50395 1.25613 0.95597 1.01673 0.94474 0.85704 0.79235 0.80302 0.77654 1.19449 1.20807 1.20272 1.20585 0.92775 0.90225 1.50037 0.93717 1.18879 0.99418 0.94269 0.86287 1.21835 0.88114 0.94501 0.90660 1.87974 1.33187 1.84039 1.24560 1.24894 0.97329 0.93574 0.84139 0.93530 1.25931 0.87844 0.96669 0.94358 0.91295 1.61601 1.11949 1.59081 1.05808 1.22153 0.93608 0.94880 0.88209 1.25250 0.99634 0.96197 1.13013 0.87914 1.21196 1.00546 0.92731 0.91700 1.25280 0.95498 0.95324 0.96075 0.85983 1.23455 0.96921 0.96622 0.98052 1.24744 0.93510 0.97330 0.95696 0.86074 1.22955 0.97126 0.96537 1.05421 1.22456 0.93838 1.01211 1.01577 0.93145 0.95496 0.95898 0.83117 0.88327 0.87472 0.90171 0.89253 0.88898 0.93315 0.89220 0.90424 0.91765 0.90432 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -52.91 12.96 21.45 0.28 -52.63 16 2 C 0.03 1.50 5.38 84.65 0.46 1.95 16 3 Si 0.95 45.08 29.55 68.60 2.03 47.11 16 4 H -0.27 -12.66 7.11 99.48 0.71 -11.95 16 5 H -0.28 -13.27 7.11 99.48 0.71 -12.56 16 6 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 7 C -0.50 -28.53 8.76 25.60 0.22 -28.31 16 8 H 0.04 2.63 7.83 -2.91 -0.02 2.61 16 9 C 0.01 0.61 1.59 -52.93 -0.08 0.52 16 10 C 0.13 5.94 5.55 71.98 0.40 6.34 16 11 O -0.38 -16.67 9.93 -148.98 -1.48 -18.15 16 12 C 0.06 2.06 2.00 33.48 0.07 2.12 16 13 H 0.05 1.53 6.78 -2.51 -0.02 1.51 16 14 C 0.06 2.06 4.91 47.52 0.23 2.29 16 15 H 0.07 3.09 8.18 -2.07 -0.02 3.07 16 16 N -0.75 -22.07 7.03 -631.04 -4.44 -26.50 16 17 C 0.14 2.92 8.22 84.52 0.69 3.62 16 18 C -0.32 -7.33 5.71 -11.74 -0.07 -7.40 16 19 H 0.10 2.69 0.94 -203.44 -0.19 2.50 16 20 C -0.02 -0.48 6.58 31.52 0.21 -0.28 16 21 C -0.10 -2.74 5.35 -4.58 -0.02 -2.77 16 22 H 0.12 3.07 8.15 -2.32 -0.02 3.05 16 23 C -0.11 -3.11 6.29 33.67 0.21 -2.90 16 24 C -0.09 -2.63 5.62 -5.94 -0.03 -2.66 16 25 H 0.12 3.15 8.15 -2.31 -0.02 3.13 16 26 C -0.18 -8.13 9.96 30.62 0.30 -7.83 16 27 C -0.15 -7.31 9.47 30.62 0.29 -7.02 16 28 H 0.26 14.48 8.32 -92.71 -0.77 13.70 16 29 H 0.03 1.16 8.09 -2.38 -0.02 1.14 16 30 H 0.02 1.21 8.07 -2.39 -0.02 1.19 16 31 H 0.35 9.84 7.82 -90.47 -0.71 9.14 16 32 H 0.10 2.00 7.95 -3.01 -0.02 1.98 16 33 H 0.11 1.71 8.04 -3.00 -0.02 1.69 16 34 H 0.08 1.39 8.16 -2.26 -0.02 1.37 16 35 H 0.09 1.46 8.16 -2.26 -0.02 1.44 16 36 H 0.09 2.06 8.14 -2.36 -0.02 2.04 16 37 H 0.05 1.63 8.14 -2.38 -0.02 1.61 16 38 H 0.09 3.50 8.14 -2.39 -0.02 3.48 16 39 H 0.08 3.41 8.14 -2.39 -0.02 3.39 16 40 H 0.06 3.28 8.14 -2.39 -0.02 3.26 16 41 H 0.08 3.40 8.14 -2.39 -0.02 3.38 16 Total: -1.00 -63.83 319.68 -0.61 -64.44 By element: Atomic # 1 Polarization: 27.94 SS G_CDS: 0.12 Total: 28.05 kcal Atomic # 6 Polarization: -45.20 SS G_CDS: 2.88 Total: -42.32 kcal Atomic # 7 Polarization: -74.97 SS G_CDS: -4.16 Total: -79.13 kcal Atomic # 8 Polarization: -16.67 SS G_CDS: -1.48 Total: -18.15 kcal Atomic # 14 Polarization: 45.08 SS G_CDS: 2.03 Total: 47.11 kcal Total: -63.83 -0.61 -64.44 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000310104903.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 211.872 kcal (2) G-P(sol) polarization free energy of solvation -63.827 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 148.045 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.615 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.442 kcal (6) G-S(sol) free energy of system = (1) + (5) 147.431 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds