Wall clock time and date at job start Mon Mar 30 2020 04:36:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86797 * 120.00013 * 2 1 4 4 H 1.48496 * 109.47226 * 239.99948 * 3 2 1 5 5 H 1.48508 * 109.47159 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47109 * 119.99729 * 3 2 1 7 7 C 1.37872 * 120.00008 * 179.97438 * 2 1 3 8 8 H 1.08008 * 120.00022 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00222 * 359.97438 * 7 2 1 10 10 O 1.42898 * 109.47209 * 180.02562 * 9 7 2 11 11 C 1.42901 * 113.99962 * 180.02562 * 10 9 7 12 12 C 1.53003 * 109.47142 * 179.97438 * 11 10 9 13 13 N 1.46899 * 109.46954 * 62.31917 * 12 11 10 14 14 C 1.46852 * 111.00143 * 52.03724 * 13 12 11 15 15 C 1.53027 * 109.52453 * 185.84019 * 14 13 12 16 16 C 1.53120 * 109.27888 * 300.81507 * 15 14 13 17 17 C 1.52998 * 109.57785 * 177.58862 * 16 15 14 18 18 F 1.39903 * 109.46782 * 60.28924 * 17 16 15 19 19 F 1.39907 * 109.47517 * 180.28786 * 17 16 15 20 20 C 1.53127 * 109.15569 * 57.65528 * 16 15 14 21 21 C 1.46846 * 110.99769 * 176.24392 * 13 12 11 22 22 H 0.97002 * 119.99962 * 0.02562 * 1 2 3 23 23 H 1.08992 * 109.47145 * 60.00032 * 9 7 2 24 24 H 1.09004 * 109.46959 * 300.00123 * 9 7 2 25 25 H 1.08994 * 109.47212 * 59.99781 * 11 10 9 26 26 H 1.09002 * 109.46956 * 299.99829 * 11 10 9 27 27 H 1.08999 * 109.46709 * 182.31908 * 12 11 10 28 28 H 1.08998 * 109.47108 * 302.32145 * 12 11 10 29 29 H 1.08998 * 109.45943 * 305.85538 * 14 13 12 30 30 H 1.09004 * 109.46022 * 65.81712 * 14 13 12 31 31 H 1.09003 * 109.50611 * 180.88019 * 15 14 13 32 32 H 1.09004 * 109.50674 * 60.75809 * 15 14 13 33 33 H 1.09001 * 109.52807 * 297.75314 * 16 15 14 34 34 H 1.09002 * 109.47283 * 300.29069 * 17 16 15 35 35 H 1.09005 * 109.50143 * 182.40397 * 20 16 15 36 36 H 1.09004 * 109.50105 * 62.29074 * 20 16 15 37 37 H 1.08999 * 109.46373 * 294.17617 * 21 13 12 38 38 H 1.08995 * 109.46143 * 54.15690 * 21 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1028 1.6964 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0017 10 8 2.1797 -3.5852 0.0027 11 6 1.5652 -4.8754 0.0032 12 6 2.6481 -5.9562 0.0036 13 7 3.4493 -5.8461 1.2300 14 6 2.5896 -5.8298 2.4205 15 6 3.4428 -5.5688 3.6638 16 6 4.5011 -6.6681 3.7907 17 6 5.3962 -6.3811 4.9978 18 9 4.6178 -6.3560 6.1600 19 9 6.3663 -7.3832 5.1078 20 6 5.3518 -6.6958 2.5178 21 6 4.4434 -6.9241 1.3076 22 1 -0.4850 0.8401 -0.0004 23 1 0.6241 -2.5575 -0.8879 24 1 0.6247 -2.5563 0.8920 25 1 0.9453 -4.9830 -0.8868 26 1 0.9447 -4.9819 0.8931 27 1 2.1799 -6.9396 -0.0375 28 1 3.2934 -5.8243 -0.8649 29 1 1.8442 -5.0410 2.3194 30 1 2.0882 -6.7926 2.5196 31 1 2.8067 -5.5722 4.5490 32 1 3.9337 -4.5999 3.5715 33 1 4.0106 -7.6326 3.9220 34 1 5.8846 -5.4155 4.8666 35 1 6.0797 -7.5045 2.5842 36 1 5.8728 -5.7447 2.4075 37 1 3.9333 -7.8817 1.4120 38 1 5.0444 -6.9300 0.3984 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000339023057.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:36:55 Heat of formation + Delta-G solvation = -160.652476 kcal Electronic energy + Delta-G solvation = -20372.841532 eV Core-core repulsion = 16885.397960 eV Total energy + Delta-G solvation = -3487.443572 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.144 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -49.05975 -47.06110 -39.21016 -36.66757 -34.26778 -32.62848 -30.96714 -29.42429 -27.13593 -25.94612 -23.50418 -22.67071 -22.27317 -20.94824 -19.97547 -17.37466 -17.17844 -16.92981 -16.36892 -15.78899 -15.56472 -14.93124 -14.51463 -14.38828 -14.09791 -14.05097 -13.74597 -13.53850 -13.40227 -12.89167 -12.58234 -12.38918 -12.25449 -11.74382 -11.72564 -11.27824 -11.16203 -10.88781 -10.81113 -10.76746 -10.71164 -10.42899 -10.22371 -9.91714 -9.08464 -8.77956 -8.15088 -8.08033 -6.08688 -4.09846 3.33764 3.36336 3.40373 3.63763 3.95020 4.11700 4.28160 4.36830 4.38132 4.82225 4.89514 5.04815 5.10152 5.18100 5.27849 5.33006 5.39047 5.47299 5.52174 5.61846 5.65725 5.76370 5.86329 5.93174 6.00536 6.04502 6.19107 6.27320 6.28736 7.10962 7.23271 7.25652 7.44655 7.82653 8.18659 8.62698 9.04300 9.55011 11.02929 Molecular weight = 263.14amu Principal moments of inertia in cm(-1) A = 0.021592 B = 0.004293 C = 0.003874 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1296.458242 B = 6520.504637 C = 7225.855233 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.056 3.944 3 Si 0.907 3.093 4 H -0.275 1.275 5 H -0.287 1.287 6 H -0.275 1.275 7 C -0.511 4.511 8 H 0.066 0.934 9 C 0.194 3.806 10 O -0.378 6.378 11 C 0.060 3.940 12 C 0.063 3.937 13 N -0.524 5.524 14 C 0.055 3.945 15 C -0.111 4.111 16 C -0.137 4.137 17 C 0.264 3.736 18 F -0.207 7.207 19 F -0.209 7.209 20 C -0.110 4.110 21 C 0.059 3.941 22 H 0.264 0.736 23 H 0.002 0.998 24 H 0.002 0.998 25 H 0.040 0.960 26 H 0.038 0.962 27 H 0.037 0.963 28 H 0.082 0.918 29 H 0.093 0.907 30 H 0.027 0.973 31 H 0.074 0.926 32 H 0.083 0.917 33 H 0.087 0.913 34 H 0.112 0.888 35 H 0.073 0.927 36 H 0.081 0.919 37 H 0.029 0.971 38 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.100 -15.427 6.531 18.608 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.145 4.145 3 Si 0.735 3.265 4 H -0.200 1.200 5 H -0.212 1.212 6 H -0.200 1.200 7 C -0.549 4.549 8 H 0.084 0.916 9 C 0.119 3.881 10 O -0.298 6.298 11 C -0.018 4.018 12 C -0.065 4.065 13 N -0.249 5.249 14 C -0.073 4.073 15 C -0.149 4.149 16 C -0.156 4.156 17 C 0.210 3.790 18 F -0.188 7.188 19 F -0.191 7.191 20 C -0.148 4.148 21 C -0.069 4.069 22 H 0.073 0.927 23 H 0.020 0.980 24 H 0.020 0.980 25 H 0.058 0.942 26 H 0.056 0.944 27 H 0.055 0.945 28 H 0.100 0.900 29 H 0.111 0.889 30 H 0.045 0.955 31 H 0.093 0.907 32 H 0.102 0.898 33 H 0.106 0.894 34 H 0.129 0.871 35 H 0.091 0.909 36 H 0.099 0.901 37 H 0.047 0.953 38 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 8.396 -14.846 6.540 18.267 hybrid contribution -0.460 -0.024 0.136 0.481 sum 7.936 -14.870 6.675 18.129 Atomic orbital electron populations 1.69955 1.06108 1.27187 1.50736 1.24938 0.94945 0.99380 0.95226 0.86410 0.79313 0.81988 0.78839 1.20042 1.21221 1.20025 1.21015 0.94044 0.89320 1.50558 0.91563 1.20179 0.88850 0.83928 0.95094 1.87968 1.34571 1.12231 1.95012 1.22354 0.93980 0.86433 0.99039 1.22130 0.95483 0.95911 0.92974 1.61831 1.16275 1.44932 1.01843 1.22126 0.95367 1.00491 0.89298 1.21592 0.96802 0.98384 0.98097 1.22317 0.97356 1.02069 0.93870 1.22060 0.82938 0.91099 0.82864 1.92971 1.76216 1.97242 1.52401 1.92960 1.64691 1.64909 1.96499 1.21584 0.97425 1.03385 0.92434 1.22016 0.94482 0.92039 0.98399 0.92670 0.98007 0.97985 0.94207 0.94390 0.94521 0.89966 0.88929 0.95490 0.90733 0.89812 0.89449 0.87060 0.90871 0.90083 0.95300 0.90318 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.94 13.29 55.43 0.74 -26.20 16 2 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 3 Si 0.91 21.87 29.54 -169.99 -5.02 16.84 16 4 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 5 H -0.29 -6.76 7.11 56.52 0.40 -6.35 16 6 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 7 C -0.51 -15.04 9.43 -34.44 -0.32 -15.36 16 8 H 0.07 1.94 7.81 -52.48 -0.41 1.53 16 9 C 0.19 5.30 5.69 36.01 0.20 5.50 16 10 O -0.38 -9.02 10.23 -35.23 -0.36 -9.38 16 11 C 0.06 1.08 5.56 37.16 0.21 1.29 16 12 C 0.06 0.91 5.52 -3.82 -0.02 0.89 16 13 N -0.52 -7.52 4.67 -234.68 -1.10 -8.62 16 14 C 0.05 0.75 5.04 -3.84 -0.02 0.73 16 15 C -0.11 -1.32 5.23 -26.65 -0.14 -1.46 16 16 C -0.14 -1.40 2.37 -90.49 -0.21 -1.61 16 17 C 0.26 2.65 4.75 37.16 0.18 2.82 16 18 F -0.21 -2.44 16.88 2.25 0.04 -2.40 16 19 F -0.21 -2.32 16.87 2.25 0.04 -2.29 16 20 C -0.11 -1.11 5.23 -26.65 -0.14 -1.25 16 21 C 0.06 0.66 5.46 -3.84 -0.02 0.64 16 22 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 23 H 0.00 0.06 8.14 -51.93 -0.42 -0.36 16 24 H 0.00 0.07 8.14 -51.93 -0.42 -0.36 16 25 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 26 H 0.04 0.67 6.05 -51.93 -0.31 0.35 16 27 H 0.04 0.45 8.14 -51.93 -0.42 0.03 16 28 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16 29 H 0.09 1.47 5.79 -51.93 -0.30 1.17 16 30 H 0.03 0.33 8.14 -51.93 -0.42 -0.09 16 31 H 0.07 0.83 7.89 -51.93 -0.41 0.43 16 32 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 33 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 34 H 0.11 0.91 8.14 -51.93 -0.42 0.49 16 35 H 0.07 0.64 7.88 -51.93 -0.41 0.23 16 36 H 0.08 0.86 8.14 -51.93 -0.42 0.43 16 37 H 0.03 0.30 8.14 -51.93 -0.42 -0.12 16 38 H 0.08 0.84 8.12 -51.93 -0.42 0.42 16 LS Contribution 313.97 15.07 4.73 4.73 Total: -1.00 -31.40 313.97 -7.37 -38.77 By element: Atomic # 1 Polarization: 0.89 SS G_CDS: -6.05 Total: -5.16 kcal Atomic # 6 Polarization: -5.90 SS G_CDS: -0.39 Total: -6.29 kcal Atomic # 7 Polarization: -34.46 SS G_CDS: -0.36 Total: -34.82 kcal Atomic # 8 Polarization: -9.02 SS G_CDS: -0.36 Total: -9.38 kcal Atomic # 9 Polarization: -4.77 SS G_CDS: 0.08 Total: -4.69 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.02 Total: 16.84 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -31.40 -7.37 -38.77 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000339023057.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -121.878 kcal (2) G-P(sol) polarization free energy of solvation -31.401 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -153.280 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.373 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.774 kcal (6) G-S(sol) free energy of system = (1) + (5) -160.652 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds