Wall clock time and date at job start Mon Mar 30 2020 04:36:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86797 * 120.00013 * 2 1 4 4 H 1.48496 * 109.47226 * 239.99948 * 3 2 1 5 5 H 1.48508 * 109.47159 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47109 * 119.99729 * 3 2 1 7 7 C 1.37872 * 120.00008 * 179.97438 * 2 1 3 8 8 H 1.08008 * 120.00022 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00222 * 359.97438 * 7 2 1 10 10 O 1.42898 * 109.47209 * 180.02562 * 9 7 2 11 11 C 1.42901 * 113.99962 * 180.02562 * 10 9 7 12 12 C 1.53003 * 109.47142 * 179.97438 * 11 10 9 13 13 N 1.46899 * 109.46954 * 62.31917 * 12 11 10 14 14 C 1.46852 * 111.00143 * 52.03724 * 13 12 11 15 15 C 1.53027 * 109.52453 * 185.84019 * 14 13 12 16 16 C 1.53120 * 109.27888 * 300.81507 * 15 14 13 17 17 C 1.52998 * 109.57785 * 177.58862 * 16 15 14 18 18 F 1.39903 * 109.46782 * 60.28924 * 17 16 15 19 19 F 1.39907 * 109.47517 * 180.28786 * 17 16 15 20 20 C 1.53127 * 109.15569 * 57.65528 * 16 15 14 21 21 C 1.46846 * 110.99769 * 176.24392 * 13 12 11 22 22 H 0.97002 * 119.99962 * 0.02562 * 1 2 3 23 23 H 1.08992 * 109.47145 * 60.00032 * 9 7 2 24 24 H 1.09004 * 109.46959 * 300.00123 * 9 7 2 25 25 H 1.08994 * 109.47212 * 59.99781 * 11 10 9 26 26 H 1.09002 * 109.46956 * 299.99829 * 11 10 9 27 27 H 1.08999 * 109.46709 * 182.31908 * 12 11 10 28 28 H 1.08998 * 109.47108 * 302.32145 * 12 11 10 29 29 H 1.08998 * 109.45943 * 305.85538 * 14 13 12 30 30 H 1.09004 * 109.46022 * 65.81712 * 14 13 12 31 31 H 1.09003 * 109.50611 * 180.88019 * 15 14 13 32 32 H 1.09004 * 109.50674 * 60.75809 * 15 14 13 33 33 H 1.09001 * 109.52807 * 297.75314 * 16 15 14 34 34 H 1.09002 * 109.47283 * 300.29069 * 17 16 15 35 35 H 1.09005 * 109.50143 * 182.40397 * 20 16 15 36 36 H 1.09004 * 109.50105 * 62.29074 * 20 16 15 37 37 H 1.08999 * 109.46373 * 294.17617 * 21 13 12 38 38 H 1.08995 * 109.46143 * 54.15690 * 21 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1028 1.6964 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0017 10 8 2.1797 -3.5852 0.0027 11 6 1.5652 -4.8754 0.0032 12 6 2.6481 -5.9562 0.0036 13 7 3.4493 -5.8461 1.2300 14 6 2.5896 -5.8298 2.4205 15 6 3.4428 -5.5688 3.6638 16 6 4.5011 -6.6681 3.7907 17 6 5.3962 -6.3811 4.9978 18 9 4.6178 -6.3560 6.1600 19 9 6.3663 -7.3832 5.1078 20 6 5.3518 -6.6958 2.5178 21 6 4.4434 -6.9241 1.3076 22 1 -0.4850 0.8401 -0.0004 23 1 0.6241 -2.5575 -0.8879 24 1 0.6247 -2.5563 0.8920 25 1 0.9453 -4.9830 -0.8868 26 1 0.9447 -4.9819 0.8931 27 1 2.1799 -6.9396 -0.0375 28 1 3.2934 -5.8243 -0.8649 29 1 1.8442 -5.0410 2.3194 30 1 2.0882 -6.7926 2.5196 31 1 2.8067 -5.5722 4.5490 32 1 3.9337 -4.5999 3.5715 33 1 4.0106 -7.6326 3.9220 34 1 5.8846 -5.4155 4.8666 35 1 6.0797 -7.5045 2.5842 36 1 5.8728 -5.7447 2.4075 37 1 3.9333 -7.8817 1.4120 38 1 5.0444 -6.9300 0.3984 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000339023057.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:36:54 Heat of formation + Delta-G solvation = -180.968746 kcal Electronic energy + Delta-G solvation = -20373.722512 eV Core-core repulsion = 16885.397960 eV Total energy + Delta-G solvation = -3488.324552 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.144 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -49.90485 -47.91549 -40.26144 -38.36301 -35.49935 -34.70732 -31.92198 -30.78854 -29.00782 -27.14615 -24.54503 -24.44780 -23.59604 -22.08368 -20.93577 -18.59352 -18.21386 -18.03734 -17.89198 -17.37787 -16.90189 -16.43816 -15.90605 -15.74696 -15.34807 -15.03351 -14.90586 -14.76061 -14.35606 -14.24146 -13.76350 -13.58373 -13.56481 -13.11844 -12.95196 -12.83772 -12.68664 -12.35899 -12.29751 -12.17406 -11.91529 -11.70692 -11.36476 -11.30225 -11.16199 -10.81848 -10.15657 -9.14078 -8.29931 -6.41728 1.41114 1.45725 1.54068 2.36420 2.81202 2.92146 3.04004 3.25857 3.34714 3.43746 3.56043 4.00666 4.05929 4.16953 4.26064 4.28292 4.30947 4.44679 4.48682 4.59076 4.60578 4.73702 4.76837 4.83714 4.90235 4.96325 5.02233 5.10424 5.13764 5.20884 5.33923 5.57451 5.99335 6.14250 6.25905 6.58712 6.87640 7.30509 8.82199 Molecular weight = 263.14amu Principal moments of inertia in cm(-1) A = 0.021592 B = 0.004293 C = 0.003874 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1296.458242 B = 6520.504637 C = 7225.855233 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.007 3.993 3 Si 0.981 3.019 4 H -0.265 1.265 5 H -0.276 1.276 6 H -0.266 1.266 7 C -0.544 4.544 8 H 0.061 0.939 9 C 0.210 3.790 10 O -0.392 6.392 11 C 0.050 3.950 12 C 0.071 3.929 13 N -0.549 5.549 14 C 0.057 3.943 15 C -0.107 4.107 16 C -0.128 4.128 17 C 0.264 3.736 18 F -0.218 7.218 19 F -0.213 7.213 20 C -0.106 4.106 21 C 0.059 3.941 22 H 0.270 0.730 23 H -0.018 1.018 24 H -0.018 1.018 25 H 0.045 0.955 26 H 0.042 0.958 27 H 0.068 0.932 28 H 0.082 0.918 29 H 0.061 0.939 30 H 0.043 0.957 31 H 0.078 0.922 32 H 0.068 0.932 33 H 0.093 0.907 34 H 0.131 0.869 35 H 0.091 0.909 36 H 0.074 0.926 37 H 0.043 0.957 38 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.419 -15.880 6.715 19.647 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.191 4.191 3 Si 0.804 3.196 4 H -0.190 1.190 5 H -0.201 1.201 6 H -0.190 1.190 7 C -0.582 4.582 8 H 0.079 0.921 9 C 0.134 3.866 10 O -0.311 6.311 11 C -0.027 4.027 12 C -0.057 4.057 13 N -0.274 5.274 14 C -0.071 4.071 15 C -0.145 4.145 16 C -0.148 4.148 17 C 0.210 3.790 18 F -0.199 7.199 19 F -0.195 7.195 20 C -0.144 4.144 21 C -0.068 4.068 22 H 0.079 0.921 23 H 0.000 1.000 24 H 0.000 1.000 25 H 0.064 0.936 26 H 0.060 0.940 27 H 0.086 0.914 28 H 0.100 0.900 29 H 0.079 0.921 30 H 0.061 0.939 31 H 0.097 0.903 32 H 0.087 0.913 33 H 0.111 0.889 34 H 0.149 0.851 35 H 0.110 0.890 36 H 0.092 0.908 37 H 0.061 0.939 38 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 9.720 -15.332 6.725 19.359 hybrid contribution -0.915 0.025 0.076 0.919 sum 8.805 -15.306 6.801 18.922 Atomic orbital electron populations 1.70065 1.07759 1.28614 1.50698 1.25930 0.95907 1.03292 0.93981 0.85268 0.78121 0.76858 0.79378 1.19026 1.20055 1.19039 1.21341 0.94036 0.90838 1.51972 0.92109 1.19776 0.88662 0.85045 0.93082 1.87918 1.34488 1.13688 1.95036 1.22701 0.95715 0.84813 0.99473 1.22047 0.94641 0.95614 0.93373 1.61803 1.16891 1.47035 1.01697 1.22043 0.95124 1.00099 0.89855 1.21518 0.97146 0.98359 0.97501 1.22214 0.96893 1.01463 0.94182 1.22216 0.82798 0.91771 0.82178 1.92951 1.76587 1.97301 1.53082 1.92951 1.64797 1.65255 1.96482 1.21570 0.97378 1.03765 0.91694 1.22091 0.93924 0.91556 0.99278 0.92122 1.00007 1.00018 0.93645 0.94034 0.91413 0.89993 0.92068 0.93931 0.90312 0.91339 0.88851 0.85149 0.89029 0.90758 0.93899 0.89634 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.32 13.29 21.45 0.28 -56.04 16 2 C 0.01 0.42 5.46 84.65 0.46 0.88 16 3 Si 0.98 44.54 29.54 68.60 2.03 46.57 16 4 H -0.27 -11.60 7.11 99.48 0.71 -10.90 16 5 H -0.28 -11.94 7.11 99.48 0.71 -11.24 16 6 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 7 C -0.54 -32.66 9.43 25.60 0.24 -32.42 16 8 H 0.06 3.62 7.81 -2.91 -0.02 3.60 16 9 C 0.21 11.87 5.69 71.24 0.41 12.28 16 10 O -0.39 -19.16 10.23 -148.98 -1.52 -20.68 16 11 C 0.05 1.83 5.56 71.98 0.40 2.23 16 12 C 0.07 1.98 5.52 86.30 0.48 2.45 16 13 N -0.55 -15.12 4.67 -896.38 -4.19 -19.31 16 14 C 0.06 1.50 5.04 86.32 0.44 1.94 16 15 C -0.11 -2.48 5.23 30.64 0.16 -2.32 16 16 C -0.13 -2.38 2.37 -10.71 -0.03 -2.41 16 17 C 0.26 4.81 4.75 71.98 0.34 5.16 16 18 F -0.22 -4.85 16.88 44.97 0.76 -4.09 16 19 F -0.21 -4.30 16.87 44.97 0.76 -3.54 16 20 C -0.11 -1.89 5.23 30.65 0.16 -1.73 16 21 C 0.06 1.18 5.46 86.33 0.47 1.65 16 22 H 0.27 15.16 8.31 -92.71 -0.77 14.39 16 23 H -0.02 -1.05 8.14 -2.39 -0.02 -1.07 16 24 H -0.02 -1.06 8.14 -2.38 -0.02 -1.08 16 25 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 26 H 0.04 1.49 6.05 -2.39 -0.01 1.48 16 27 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 28 H 0.08 2.29 8.14 -2.39 -0.02 2.27 16 29 H 0.06 2.00 5.79 -2.39 -0.01 1.98 16 30 H 0.04 0.98 8.14 -2.38 -0.02 0.96 16 31 H 0.08 1.72 7.89 -2.39 -0.02 1.71 16 32 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 33 H 0.09 1.66 8.14 -2.39 -0.02 1.64 16 34 H 0.13 1.89 8.14 -2.39 -0.02 1.88 16 35 H 0.09 1.33 7.88 -2.38 -0.02 1.31 16 36 H 0.07 1.44 8.14 -2.38 -0.02 1.42 16 37 H 0.04 0.76 8.14 -2.39 -0.02 0.74 16 38 H 0.09 1.61 8.12 -2.39 -0.02 1.59 16 Total: -1.00 -67.48 313.97 2.68 -64.80 By element: Atomic # 1 Polarization: 3.54 SS G_CDS: 1.03 Total: 4.57 kcal Atomic # 6 Polarization: -15.82 SS G_CDS: 3.53 Total: -12.29 kcal Atomic # 7 Polarization: -71.44 SS G_CDS: -3.90 Total: -75.34 kcal Atomic # 8 Polarization: -19.16 SS G_CDS: -1.52 Total: -20.68 kcal Atomic # 9 Polarization: -9.15 SS G_CDS: 1.52 Total: -7.63 kcal Atomic # 14 Polarization: 44.54 SS G_CDS: 2.03 Total: 46.57 kcal Total: -67.48 2.68 -64.80 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000339023057.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -116.167 kcal (2) G-P(sol) polarization free energy of solvation -67.479 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -183.646 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.677 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.801 kcal (6) G-S(sol) free energy of system = (1) + (5) -180.969 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds