Wall clock time and date at job start Mon Mar 30 2020 04:15:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 N 1.40082 * 126.03893 * 2 1 4 4 C 1.30837 * 108.20578 * 179.97438 * 3 2 1 5 5 C 1.39871 * 108.20415 * 359.77468 * 4 3 2 6 6 C 1.34956 * 126.03375 * 179.97438 * 2 1 3 7 7 C 1.50700 * 126.12888 * 359.97438 * 6 2 1 8 8 C 1.53041 * 109.45879 * 145.00123 * 7 6 2 9 9 C 1.53192 * 109.33639 * 181.39820 * 8 7 6 10 10 N 1.46922 * 108.77920 * 305.35203 * 9 8 7 11 11 C 1.34776 * 120.62769 * 233.58808 * 10 9 8 12 12 O 1.21684 * 120.00435 * 354.65633 * 11 10 9 13 13 C 1.46378 * 120.00000 * 174.65811 * 11 10 9 14 14 H 1.08006 * 119.99799 * 5.89613 * 13 11 10 15 15 C 1.40044 * 120.00118 * 185.89755 * 13 11 10 16 16 N 1.30670 * 119.99988 * 5.46143 * 15 13 11 17 17 Si 1.86798 * 120.00087 * 185.45851 * 15 13 11 18 18 H 1.48502 * 109.46927 * 84.99862 * 17 15 13 19 19 H 1.48496 * 109.47284 * 205.00027 * 17 15 13 20 20 H 1.48501 * 109.47282 * 324.99854 * 17 15 13 21 21 C 1.46926 * 118.74107 * 53.60676 * 10 9 8 22 22 C 1.53112 * 109.50339 * 265.05559 * 7 6 2 23 23 H 1.09000 * 109.47052 * 270.02805 * 1 2 3 24 24 H 1.08994 * 109.46930 * 30.02616 * 1 2 3 25 25 H 1.08998 * 109.47029 * 150.02958 * 1 2 3 26 26 H 1.08000 * 125.90283 * 180.02562 * 4 3 2 27 27 H 1.07996 * 126.04652 * 180.23579 * 5 4 3 28 28 H 1.08994 * 109.44979 * 25.03156 * 7 6 2 29 29 H 1.09003 * 109.49410 * 61.43276 * 8 7 6 30 30 H 1.08990 * 109.49529 * 301.37088 * 8 7 6 31 31 H 1.09003 * 109.58100 * 65.13873 * 9 8 7 32 32 H 1.09000 * 109.58364 * 185.41772 * 9 8 7 33 33 H 0.97007 * 119.99899 * 179.97438 * 16 15 13 34 34 H 1.09001 * 109.58641 * 66.18135 * 21 10 9 35 35 H 1.08996 * 109.58514 * 186.46529 * 21 10 9 36 36 H 1.08998 * 109.48989 * 58.66752 * 22 7 6 37 37 H 1.09008 * 109.51022 * 298.60404 * 22 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2891 1.1327 0.0000 4 6 3.5346 0.7320 0.0006 5 6 3.5437 -0.6666 0.0062 6 6 2.2589 -1.0913 0.0005 7 6 1.7973 -2.5259 0.0017 8 6 2.7660 -3.3739 -0.8257 9 6 2.2752 -4.8248 -0.8516 10 7 2.0976 -5.2888 0.5311 11 6 2.6939 -6.4197 0.9578 12 8 3.3067 -7.1182 0.1721 13 6 2.6045 -6.8076 2.3664 14 1 1.9830 -6.2410 3.0441 15 6 3.3246 -7.9134 2.8352 16 7 4.1581 -8.5340 2.0429 17 14 3.0939 -8.5011 4.5933 18 1 1.9244 -9.4139 4.6605 19 1 4.3124 -9.2243 5.0374 20 1 2.8613 -7.3325 5.4795 21 6 1.2574 -4.4968 1.4396 22 6 1.7596 -3.0496 1.4400 23 1 -0.3633 0.0005 1.0277 24 1 -0.3633 0.8897 -0.5142 25 1 -0.3633 -0.8902 -0.5134 26 1 4.4054 1.3709 0.0011 27 1 4.4210 -1.2964 0.0115 28 1 0.7995 -2.5865 -0.4328 29 1 3.7588 -3.3336 -0.3775 30 1 2.8104 -2.9865 -1.8435 31 1 1.3235 -4.8791 -1.3803 32 1 3.0106 -5.4503 -1.3576 33 1 4.6572 -9.2997 2.3679 34 1 0.2227 -4.5245 1.0978 35 1 1.3205 -4.9079 2.4471 36 1 1.0873 -2.4312 2.0347 37 1 2.7617 -3.0123 1.8673 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000408318846.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:15:49 Heat of formation + Delta-G solvation = 37.870468 kcal Electronic energy + Delta-G solvation = -19961.492178 eV Core-core repulsion = 16933.346393 eV Total energy + Delta-G solvation = -3028.145785 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.137 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.26286 -38.53153 -35.98254 -33.33459 -32.69272 -32.36454 -30.59824 -29.07937 -26.74149 -26.40642 -24.40185 -22.69661 -21.44224 -20.66778 -19.56079 -18.58179 -16.88956 -16.58820 -15.64244 -15.43974 -14.57659 -14.45492 -14.27373 -13.95678 -13.79284 -13.42764 -13.13884 -12.93174 -12.71125 -12.42747 -12.35805 -11.84887 -11.58807 -11.21445 -11.04263 -10.87255 -10.78981 -10.70733 -10.50783 -10.26248 -10.11340 -9.93361 -9.16600 -8.86726 -8.40910 -7.60457 -7.26563 -6.23871 -4.66623 1.93165 2.53990 2.92468 3.12666 3.19435 3.21512 4.06459 4.48593 4.50784 4.54072 4.66109 4.90912 5.01608 5.14637 5.18782 5.26491 5.43558 5.60620 5.67132 5.75039 5.78889 5.83712 5.94856 6.03552 6.16464 6.20240 6.35661 6.44107 6.49101 6.54546 6.72674 6.76615 7.06281 7.43375 7.59434 7.76315 8.10932 8.32410 8.99925 9.40436 10.54880 10.73178 Molecular weight = 263.14amu Principal moments of inertia in cm(-1) A = 0.031023 B = 0.004715 C = 0.004558 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 902.325525 B = 5936.465994 C = 6141.360519 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.100 3.900 2 N -0.376 5.376 3 N -0.310 5.310 4 C 0.045 3.955 5 C -0.272 4.272 6 C 0.102 3.898 7 C -0.022 4.022 8 C -0.118 4.118 9 C 0.121 3.879 10 N -0.642 5.642 11 C 0.561 3.439 12 O -0.579 6.579 13 C -0.546 4.546 14 H 0.073 0.927 15 C 0.089 3.911 16 N -0.768 5.768 17 Si 0.905 3.095 18 H -0.271 1.271 19 H -0.280 1.280 20 H -0.265 1.265 21 C 0.123 3.877 22 C -0.122 4.122 23 H 0.073 0.927 24 H 0.085 0.915 25 H 0.086 0.914 26 H 0.180 0.820 27 H 0.147 0.853 28 H 0.076 0.924 29 H 0.072 0.928 30 H 0.064 0.936 31 H 0.040 0.960 32 H 0.087 0.913 33 H 0.269 0.731 34 H 0.041 0.959 35 H 0.097 0.903 36 H 0.059 0.941 37 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.107 14.085 -1.869 15.465 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.041 4.041 2 N -0.159 5.159 3 N -0.131 5.131 4 C -0.140 4.140 5 C -0.301 4.301 6 C -0.025 4.025 7 C -0.042 4.042 8 C -0.157 4.157 9 C -0.003 4.003 10 N -0.381 5.381 11 C 0.367 3.633 12 O -0.462 6.462 13 C -0.583 4.583 14 H 0.091 0.909 15 C -0.131 4.131 16 N -0.397 5.397 17 Si 0.730 3.270 18 H -0.196 1.196 19 H -0.205 1.205 20 H -0.190 1.190 21 C -0.001 4.001 22 C -0.161 4.161 23 H 0.092 0.908 24 H 0.104 0.896 25 H 0.105 0.895 26 H 0.197 0.803 27 H 0.164 0.836 28 H 0.094 0.906 29 H 0.090 0.910 30 H 0.083 0.917 31 H 0.059 0.941 32 H 0.105 0.895 33 H 0.080 0.920 34 H 0.059 0.941 35 H 0.115 0.885 36 H 0.078 0.922 37 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -6.564 14.556 -2.337 16.137 hybrid contribution 0.370 -0.730 0.914 1.227 sum -6.194 13.826 -1.422 15.217 Atomic orbital electron populations 1.21809 0.74828 1.04190 1.03300 1.48459 1.06328 1.03494 1.57579 1.77293 1.01899 1.08074 1.25813 1.23790 0.95103 0.95199 0.99908 1.21266 0.96630 0.94737 1.17487 1.21272 0.91266 0.90259 0.99711 1.19871 0.99679 0.86465 0.98195 1.21943 0.99153 0.95669 0.98946 1.21119 0.99973 0.92915 0.86316 1.48188 1.53630 1.26844 1.09408 1.18235 0.77670 0.78096 0.89324 1.90587 1.46137 1.52562 1.56875 1.20960 1.30160 1.13981 0.93166 0.90910 1.25707 0.93332 0.95462 0.98563 1.69992 1.18167 1.15980 1.35513 0.86427 0.78343 0.79389 0.82852 1.19618 1.20498 1.18952 1.21415 0.92706 0.89221 0.96789 1.21998 1.02778 0.97334 0.93970 0.90835 0.89588 0.89515 0.80285 0.83560 0.90590 0.90966 0.91727 0.94144 0.89483 0.92020 0.94103 0.88492 0.92186 0.90828 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.90 11.27 59.85 0.67 1.58 16 2 N -0.38 -4.95 4.01 -63.88 -0.26 -5.20 16 3 N -0.31 -4.46 12.58 30.62 0.39 -4.07 16 4 C 0.05 0.59 12.03 -17.36 -0.21 0.38 16 5 C -0.27 -3.75 9.98 -40.01 -0.40 -4.15 16 6 C 0.10 1.40 5.86 -82.26 -0.48 0.92 16 7 C -0.02 -0.30 2.35 -91.69 -0.22 -0.51 16 8 C -0.12 -1.79 4.92 -26.61 -0.13 -1.92 16 9 C 0.12 2.26 6.41 -3.71 -0.02 2.24 16 10 N -0.64 -14.01 2.97 -174.43 -0.52 -14.53 16 11 C 0.56 15.58 7.60 -12.99 -0.10 15.48 16 12 O -0.58 -18.42 14.52 5.20 0.08 -18.34 16 13 C -0.55 -14.92 8.87 -35.63 -0.32 -15.24 16 14 H 0.07 1.80 5.65 -52.48 -0.30 1.50 16 15 C 0.09 2.44 5.49 -17.37 -0.10 2.34 16 16 N -0.77 -22.64 11.88 55.55 0.66 -21.98 16 17 Si 0.91 19.70 29.56 -169.99 -5.03 14.67 16 18 H -0.27 -5.79 7.11 56.52 0.40 -5.39 16 19 H -0.28 -5.98 7.11 56.52 0.40 -5.58 16 20 H -0.27 -5.55 7.11 56.52 0.40 -5.15 16 21 C 0.12 2.16 6.35 -3.71 -0.02 2.13 16 22 C -0.12 -1.79 5.35 -26.57 -0.14 -1.94 16 23 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 24 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 25 H 0.09 0.65 6.97 -51.93 -0.36 0.28 16 26 H 0.18 1.72 8.06 -52.49 -0.42 1.30 16 27 H 0.15 1.93 7.41 -52.49 -0.39 1.54 16 28 H 0.08 0.93 6.95 -51.93 -0.36 0.57 16 29 H 0.07 1.19 7.36 -51.93 -0.38 0.81 16 30 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 31 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.09 1.85 7.05 -51.93 -0.37 1.49 16 33 H 0.27 7.21 8.29 -40.82 -0.34 6.87 16 34 H 0.04 0.64 8.14 -51.93 -0.42 0.21 16 35 H 0.10 1.81 5.30 -51.93 -0.28 1.53 16 36 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 37 H 0.07 1.22 8.14 -51.92 -0.42 0.79 16 LS Contribution 303.35 15.07 4.57 4.57 Total: -1.00 -34.82 303.35 -6.52 -41.34 By element: Atomic # 1 Polarization: 7.19 SS G_CDS: -4.95 Total: 2.24 kcal Atomic # 6 Polarization: 2.78 SS G_CDS: -1.46 Total: 1.32 kcal Atomic # 7 Polarization: -46.06 SS G_CDS: 0.27 Total: -45.79 kcal Atomic # 8 Polarization: -18.42 SS G_CDS: 0.08 Total: -18.34 kcal Atomic # 14 Polarization: 19.70 SS G_CDS: -5.03 Total: 14.67 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -34.82 -6.52 -41.34 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408318846.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.208 kcal (2) G-P(sol) polarization free energy of solvation -34.820 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.387 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.517 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.337 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.870 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds