Wall clock time and date at job start Mon Mar 30 2020 04:15:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 N 1.40082 * 126.03893 * 2 1 4 4 C 1.30837 * 108.20578 * 179.97438 * 3 2 1 5 5 C 1.39871 * 108.20415 * 359.77468 * 4 3 2 6 6 C 1.34956 * 126.03375 * 179.97438 * 2 1 3 7 7 C 1.50700 * 126.12888 * 359.97438 * 6 2 1 8 8 C 1.53041 * 109.45879 * 145.00123 * 7 6 2 9 9 C 1.53192 * 109.33639 * 181.39820 * 8 7 6 10 10 N 1.46922 * 108.77920 * 305.35203 * 9 8 7 11 11 C 1.34776 * 120.62769 * 233.58808 * 10 9 8 12 12 O 1.21684 * 120.00435 * 354.65633 * 11 10 9 13 13 C 1.46378 * 120.00000 * 174.65811 * 11 10 9 14 14 H 1.08006 * 119.99799 * 5.89613 * 13 11 10 15 15 C 1.40044 * 120.00118 * 185.89755 * 13 11 10 16 16 N 1.30670 * 119.99988 * 5.46143 * 15 13 11 17 17 Si 1.86798 * 120.00087 * 185.45851 * 15 13 11 18 18 H 1.48502 * 109.46927 * 84.99862 * 17 15 13 19 19 H 1.48496 * 109.47284 * 205.00027 * 17 15 13 20 20 H 1.48501 * 109.47282 * 324.99854 * 17 15 13 21 21 C 1.46926 * 118.74107 * 53.60676 * 10 9 8 22 22 C 1.53112 * 109.50339 * 265.05559 * 7 6 2 23 23 H 1.09000 * 109.47052 * 270.02805 * 1 2 3 24 24 H 1.08994 * 109.46930 * 30.02616 * 1 2 3 25 25 H 1.08998 * 109.47029 * 150.02958 * 1 2 3 26 26 H 1.08000 * 125.90283 * 180.02562 * 4 3 2 27 27 H 1.07996 * 126.04652 * 180.23579 * 5 4 3 28 28 H 1.08994 * 109.44979 * 25.03156 * 7 6 2 29 29 H 1.09003 * 109.49410 * 61.43276 * 8 7 6 30 30 H 1.08990 * 109.49529 * 301.37088 * 8 7 6 31 31 H 1.09003 * 109.58100 * 65.13873 * 9 8 7 32 32 H 1.09000 * 109.58364 * 185.41772 * 9 8 7 33 33 H 0.97007 * 119.99899 * 179.97438 * 16 15 13 34 34 H 1.09001 * 109.58641 * 66.18135 * 21 10 9 35 35 H 1.08996 * 109.58514 * 186.46529 * 21 10 9 36 36 H 1.08998 * 109.48989 * 58.66752 * 22 7 6 37 37 H 1.09008 * 109.51022 * 298.60404 * 22 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2891 1.1327 0.0000 4 6 3.5346 0.7320 0.0006 5 6 3.5437 -0.6666 0.0062 6 6 2.2589 -1.0913 0.0005 7 6 1.7973 -2.5259 0.0017 8 6 2.7660 -3.3739 -0.8257 9 6 2.2752 -4.8248 -0.8516 10 7 2.0976 -5.2888 0.5311 11 6 2.6939 -6.4197 0.9578 12 8 3.3067 -7.1182 0.1721 13 6 2.6045 -6.8076 2.3664 14 1 1.9830 -6.2410 3.0441 15 6 3.3246 -7.9134 2.8352 16 7 4.1581 -8.5340 2.0429 17 14 3.0939 -8.5011 4.5933 18 1 1.9244 -9.4139 4.6605 19 1 4.3124 -9.2243 5.0374 20 1 2.8613 -7.3325 5.4795 21 6 1.2574 -4.4968 1.4396 22 6 1.7596 -3.0496 1.4400 23 1 -0.3633 0.0005 1.0277 24 1 -0.3633 0.8897 -0.5142 25 1 -0.3633 -0.8902 -0.5134 26 1 4.4054 1.3709 0.0011 27 1 4.4210 -1.2964 0.0115 28 1 0.7995 -2.5865 -0.4328 29 1 3.7588 -3.3336 -0.3775 30 1 2.8104 -2.9865 -1.8435 31 1 1.3235 -4.8791 -1.3803 32 1 3.0106 -5.4503 -1.3576 33 1 4.6572 -9.2997 2.3679 34 1 0.2227 -4.5245 1.0978 35 1 1.3205 -4.9079 2.4471 36 1 1.0873 -2.4312 2.0347 37 1 2.7617 -3.0123 1.8673 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000408318846.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:15:48 Heat of formation + Delta-G solvation = 14.173933 kcal Electronic energy + Delta-G solvation = -19962.519737 eV Core-core repulsion = 16933.346393 eV Total energy + Delta-G solvation = -3029.173344 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.137 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -42.27144 -40.16548 -37.76416 -34.71814 -34.36025 -33.82548 -32.01638 -30.32987 -28.36041 -27.55262 -25.84640 -24.11636 -22.74516 -21.89735 -20.91359 -19.95569 -18.45066 -17.99888 -17.49122 -16.37215 -16.25751 -15.90881 -15.49949 -15.46732 -14.96687 -14.70420 -14.42178 -14.24387 -14.05472 -13.53628 -13.42995 -13.33181 -13.17178 -12.96409 -12.74392 -12.46416 -12.13872 -12.12508 -11.95061 -11.66597 -11.52948 -11.40236 -10.90092 -10.16002 -9.74248 -9.42695 -9.05848 -8.28331 -6.80034 0.91959 1.41504 1.43190 1.57008 1.67092 1.90815 2.25406 2.48634 2.88464 3.46519 3.66635 3.71161 3.82296 3.93917 4.21107 4.27540 4.37872 4.43849 4.46877 4.58505 4.69446 4.71177 4.75514 4.89034 4.95274 4.97617 4.98487 5.01648 5.16499 5.24247 5.43014 5.49955 5.76218 5.81323 6.13056 6.18334 6.44858 6.77222 6.91165 7.45951 8.50119 8.69872 Molecular weight = 263.14amu Principal moments of inertia in cm(-1) A = 0.031023 B = 0.004715 C = 0.004558 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 902.325525 B = 5936.465994 C = 6141.360519 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.088 3.912 2 N -0.376 5.376 3 N -0.333 5.333 4 C 0.043 3.957 5 C -0.290 4.290 6 C 0.098 3.902 7 C -0.010 4.010 8 C -0.106 4.106 9 C 0.119 3.881 10 N -0.645 5.645 11 C 0.542 3.458 12 O -0.635 6.635 13 C -0.570 4.570 14 H 0.095 0.905 15 C 0.030 3.970 16 N -0.824 5.824 17 Si 0.992 3.008 18 H -0.262 1.262 19 H -0.276 1.276 20 H -0.247 1.247 21 C 0.119 3.881 22 C -0.111 4.111 23 H 0.087 0.913 24 H 0.096 0.904 25 H 0.106 0.894 26 H 0.206 0.794 27 H 0.143 0.857 28 H 0.102 0.898 29 H 0.051 0.949 30 H 0.086 0.914 31 H 0.066 0.934 32 H 0.050 0.950 33 H 0.273 0.727 34 H 0.071 0.929 35 H 0.083 0.917 36 H 0.089 0.911 37 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.139 15.809 -0.630 17.792 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.052 4.052 2 N -0.159 5.159 3 N -0.154 5.154 4 C -0.142 4.142 5 C -0.320 4.320 6 C -0.030 4.030 7 C -0.030 4.030 8 C -0.145 4.145 9 C -0.005 4.005 10 N -0.381 5.381 11 C 0.348 3.652 12 O -0.523 6.523 13 C -0.606 4.606 14 H 0.113 0.887 15 C -0.185 4.185 16 N -0.454 5.454 17 Si 0.812 3.188 18 H -0.186 1.186 19 H -0.201 1.201 20 H -0.170 1.170 21 C -0.004 4.004 22 C -0.150 4.150 23 H 0.105 0.895 24 H 0.114 0.886 25 H 0.124 0.876 26 H 0.222 0.778 27 H 0.161 0.839 28 H 0.120 0.880 29 H 0.070 0.930 30 H 0.105 0.895 31 H 0.084 0.916 32 H 0.068 0.932 33 H 0.083 0.917 34 H 0.089 0.911 35 H 0.101 0.899 36 H 0.108 0.892 37 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -8.649 16.357 -1.100 18.535 hybrid contribution 0.961 -1.195 0.451 1.598 sum -7.688 15.162 -0.650 17.012 Atomic orbital electron populations 1.22181 0.72605 1.05733 1.04676 1.48768 1.07625 1.02762 1.56714 1.77259 1.02559 1.09010 1.26621 1.24226 0.95674 0.95233 0.99038 1.21447 0.96963 0.95378 1.18167 1.21170 0.91453 0.90318 1.00102 1.19724 1.00309 0.85981 0.97020 1.21787 0.98493 0.93636 1.00576 1.21247 1.00350 0.94275 0.84603 1.48050 1.53073 1.25776 1.11238 1.18635 0.77640 0.79296 0.89627 1.90535 1.48654 1.54956 1.58160 1.21509 1.30654 1.14812 0.93669 0.88672 1.26953 0.92312 0.95203 1.03988 1.70173 1.19715 1.16916 1.38581 0.85110 0.78454 0.79248 0.76000 1.18643 1.20104 1.17016 1.21624 0.93501 0.89978 0.95257 1.21865 1.02009 0.95854 0.95249 0.89496 0.88580 0.87579 0.77771 0.83893 0.87951 0.93010 0.89545 0.91570 0.93159 0.91688 0.91095 0.89887 0.89211 0.93173 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.26 11.27 127.77 1.44 2.70 16 2 N -0.38 -8.79 4.01 -356.03 -1.43 -10.22 16 3 N -0.33 -8.86 12.58 -57.02 -0.72 -9.58 16 4 C 0.04 1.04 12.03 85.24 1.02 2.07 16 5 C -0.29 -7.62 9.98 21.99 0.22 -7.40 16 6 C 0.10 2.45 5.86 41.41 0.24 2.69 16 7 C -0.01 -0.25 2.35 -11.49 -0.03 -0.27 16 8 C -0.11 -3.10 4.92 30.67 0.15 -2.95 16 9 C 0.12 4.43 6.41 86.36 0.55 4.99 16 10 N -0.64 -28.23 2.97 -824.01 -2.45 -30.68 16 11 C 0.54 31.11 7.60 86.36 0.66 31.77 16 12 O -0.64 -42.60 14.52 -4.30 -0.06 -42.67 16 13 C -0.57 -31.59 8.87 24.83 0.22 -31.37 16 14 H 0.10 4.65 5.65 -2.91 -0.02 4.64 16 15 C 0.03 1.68 5.49 85.30 0.47 2.15 16 16 N -0.82 -50.37 11.88 21.83 0.26 -50.11 16 17 Si 0.99 40.37 29.56 68.60 2.03 42.40 16 18 H -0.26 -10.19 7.11 99.48 0.71 -9.49 16 19 H -0.28 -10.94 7.11 99.48 0.71 -10.24 16 20 H -0.25 -9.22 7.11 99.48 0.71 -8.51 16 21 C 0.12 3.95 6.35 86.36 0.55 4.50 16 22 C -0.11 -3.00 5.35 30.70 0.16 -2.83 16 23 H 0.09 1.03 8.14 -2.39 -0.02 1.01 16 24 H 0.10 1.18 8.14 -2.39 -0.02 1.16 16 25 H 0.11 1.09 6.97 -2.39 -0.02 1.08 16 26 H 0.21 3.54 8.06 -2.91 -0.02 3.52 16 27 H 0.14 3.74 7.41 -2.91 -0.02 3.72 16 28 H 0.10 2.01 6.95 -2.39 -0.02 2.00 16 29 H 0.05 1.73 7.36 -2.39 -0.02 1.71 16 30 H 0.09 2.17 8.14 -2.39 -0.02 2.15 16 31 H 0.07 2.12 8.14 -2.39 -0.02 2.10 16 32 H 0.05 2.24 7.05 -2.39 -0.02 2.23 16 33 H 0.27 15.18 8.29 -92.70 -0.77 14.41 16 34 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 35 H 0.08 2.98 5.30 -2.39 -0.01 2.97 16 36 H 0.09 1.94 8.14 -2.39 -0.02 1.92 16 37 H 0.05 1.60 8.14 -2.38 -0.02 1.59 16 Total: -1.00 -79.29 303.35 4.37 -74.92 By element: Atomic # 1 Polarization: 18.83 SS G_CDS: 1.07 Total: 19.91 kcal Atomic # 6 Polarization: 0.37 SS G_CDS: 5.66 Total: 6.03 kcal Atomic # 7 Polarization: -96.26 SS G_CDS: -4.34 Total: -100.59 kcal Atomic # 8 Polarization: -42.60 SS G_CDS: -0.06 Total: -42.67 kcal Atomic # 14 Polarization: 40.37 SS G_CDS: 2.03 Total: 42.40 kcal Total: -79.29 4.37 -74.92 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408318846.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.095 kcal (2) G-P(sol) polarization free energy of solvation -79.287 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.807 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.367 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.921 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.174 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds