Wall clock time and date at job start Mon Mar 30 2020 04:18:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.34950 * 126.03844 * 2 1 4 4 C 1.35313 * 107.74708 * 179.75641 * 3 2 1 5 5 C 1.39867 * 107.92057 * 0.39026 * 4 3 2 6 6 C 1.50704 * 125.89773 * 179.86319 * 5 4 3 7 7 H 1.08998 * 109.52134 * 204.79874 * 6 5 4 8 8 C 1.53040 * 109.49273 * 84.72273 * 6 5 4 9 9 C 1.53041 * 109.52499 * 178.67650 * 8 6 5 10 10 C 1.53197 * 109.31443 * 61.36726 * 9 8 6 11 11 N 1.46920 * 108.77425 * 305.36742 * 10 9 8 12 12 C 1.34782 * 120.63340 * 233.58245 * 11 10 9 13 13 O 1.21683 * 120.00148 * 174.82665 * 12 11 10 14 14 C 1.46378 * 119.99303 * 354.83172 * 12 11 10 15 15 H 1.08000 * 120.00413 * 342.41582 * 14 12 11 16 16 C 1.40053 * 119.99427 * 162.42266 * 14 12 11 17 17 N 1.30678 * 119.99464 * 170.18364 * 16 14 12 18 18 Si 1.86797 * 120.00268 * 350.18536 * 16 14 12 19 19 H 1.48496 * 109.47204 * 84.76379 * 18 16 14 20 20 H 1.48502 * 109.46967 * 204.76277 * 18 16 14 21 21 H 1.48497 * 109.47181 * 324.76335 * 18 16 14 22 22 C 1.46925 * 118.73995 * 53.60724 * 11 10 9 23 23 N 1.30837 * 108.20153 * 359.60684 * 5 4 3 24 24 H 1.09009 * 109.46413 * 270.02316 * 1 2 3 25 25 H 1.08997 * 109.47418 * 30.02158 * 1 2 3 26 26 H 1.09000 * 109.46999 * 150.02797 * 1 2 3 27 27 H 1.08003 * 126.12279 * 0.02562 * 3 2 1 28 28 H 1.08001 * 126.03764 * 180.27792 * 4 3 2 29 29 H 1.08996 * 109.46635 * 58.66008 * 8 6 5 30 30 H 1.09000 * 109.45773 * 298.68259 * 8 6 5 31 31 H 1.08997 * 109.49872 * 181.31916 * 9 8 6 32 32 H 1.09004 * 109.50028 * 301.38622 * 9 8 6 33 33 H 1.09004 * 109.58598 * 65.15524 * 10 9 8 34 34 H 1.08998 * 109.58890 * 185.57667 * 10 9 8 35 35 H 0.96998 * 119.99352 * 180.02562 * 17 16 14 36 36 H 1.08998 * 109.58824 * 66.17893 * 22 11 10 37 37 H 1.09002 * 109.58750 * 186.59850 * 22 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2589 1.0912 0.0000 4 6 3.5437 0.6666 0.0055 5 6 3.5347 -0.7321 -0.0001 6 6 4.7497 -1.6236 0.0002 7 1 4.4931 -2.5892 -0.4354 8 6 5.2354 -1.8244 1.4375 9 6 6.4494 -2.7562 1.4417 10 6 7.5824 -2.1159 0.6335 11 7 7.0793 -1.7864 -0.7070 12 6 7.7213 -2.2241 -1.8083 13 8 7.2444 -2.0252 -2.9100 14 6 8.9921 -2.9389 -1.6789 15 1 9.5570 -2.8744 -0.7607 16 6 9.4756 -3.7063 -2.7461 17 7 10.6905 -4.1861 -2.7080 18 14 8.3838 -4.0439 -4.2237 19 1 8.4766 -2.9093 -5.1772 20 1 8.8301 -5.2916 -4.8940 21 1 6.9770 -4.1993 -3.7746 22 6 5.8633 -0.9701 -0.8242 23 7 2.2892 -1.1327 -0.0001 24 1 -0.3632 0.0004 1.0278 25 1 -0.3634 0.8897 -0.5141 26 1 -0.3633 -0.8902 -0.5134 27 1 1.9281 2.1193 0.0004 28 1 4.4210 1.2964 0.0112 29 1 4.4363 -2.2665 2.0325 30 1 5.5155 -0.8612 1.8641 31 1 6.7806 -2.9176 2.4676 32 1 6.1766 -3.7113 0.9930 33 1 7.9179 -1.2063 1.1317 34 1 8.4130 -2.8167 0.5500 35 1 11.0254 -4.7173 -3.4472 36 1 6.0585 0.0329 -0.4449 37 1 5.5596 -0.9149 -1.8696 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000409440758.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:18:18 Heat of formation + Delta-G solvation = 29.384260 kcal Electronic energy + Delta-G solvation = -19871.970493 eV Core-core repulsion = 16843.456718 eV Total energy + Delta-G solvation = -3028.513774 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.137 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.18384 -38.76897 -36.33205 -33.73915 -32.79211 -31.69795 -30.66233 -30.03412 -26.99971 -26.11451 -24.26959 -23.01366 -21.16363 -20.82767 -19.33935 -18.67378 -17.06326 -16.52763 -15.91156 -15.47528 -14.89104 -14.53763 -14.18204 -14.01117 -13.70017 -13.55593 -13.20616 -12.90800 -12.66249 -12.54617 -12.30187 -12.01474 -11.94029 -11.62666 -11.00956 -10.86906 -10.62102 -10.48736 -10.39818 -10.19714 -10.17249 -9.40754 -9.13747 -8.96617 -8.51343 -7.88494 -7.47832 -6.58041 -4.77757 1.90865 2.50219 2.88390 3.49254 3.51925 3.74553 4.17322 4.28335 4.45561 4.59634 4.75997 4.92942 4.94876 5.17136 5.18564 5.25560 5.42041 5.51096 5.61067 5.71863 5.77623 5.86610 5.99841 6.03115 6.15919 6.21607 6.35998 6.47449 6.52494 6.58673 6.72237 6.78240 7.01296 7.15265 7.70093 7.80300 7.93127 8.37083 8.77006 9.19697 10.09429 10.43313 Molecular weight = 263.14amu Principal moments of inertia in cm(-1) A = 0.029698 B = 0.005100 C = 0.004662 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 942.601965 B = 5488.889063 C = 6004.423265 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.105 3.895 2 N -0.385 5.385 3 C 0.047 3.953 4 C -0.263 4.263 5 C 0.095 3.905 6 C -0.023 4.023 7 H 0.086 0.914 8 C -0.101 4.101 9 C -0.134 4.134 10 C 0.119 3.881 11 N -0.631 5.631 12 C 0.556 3.444 13 O -0.616 6.616 14 C -0.533 4.533 15 H 0.091 0.909 16 C 0.104 3.896 17 N -0.830 5.830 18 Si 0.961 3.039 19 H -0.276 1.276 20 H -0.320 1.320 21 H -0.267 1.267 22 C 0.132 3.868 23 N -0.298 5.298 24 H 0.071 0.929 25 H 0.084 0.916 26 H 0.086 0.914 27 H 0.171 0.829 28 H 0.148 0.852 29 H 0.058 0.942 30 H 0.063 0.937 31 H 0.068 0.932 32 H 0.067 0.933 33 H 0.047 0.953 34 H 0.099 0.901 35 H 0.281 0.719 36 H 0.052 0.948 37 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.649 8.352 9.368 20.060 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.037 4.037 2 N -0.167 5.167 3 C -0.098 4.098 4 C -0.292 4.292 5 C -0.072 4.072 6 C -0.045 4.045 7 H 0.104 0.896 8 C -0.139 4.139 9 C -0.173 4.173 10 C -0.005 4.005 11 N -0.364 5.364 12 C 0.365 3.635 13 O -0.508 6.508 14 C -0.569 4.569 15 H 0.109 0.891 16 C -0.114 4.114 17 N -0.460 5.460 18 Si 0.793 3.207 19 H -0.202 1.202 20 H -0.251 1.251 21 H -0.193 1.193 22 C 0.007 3.993 23 N -0.120 5.120 24 H 0.089 0.911 25 H 0.103 0.897 26 H 0.105 0.895 27 H 0.188 0.812 28 H 0.166 0.834 29 H 0.076 0.924 30 H 0.082 0.918 31 H 0.087 0.913 32 H 0.085 0.915 33 H 0.065 0.935 34 H 0.117 0.883 35 H 0.091 0.909 36 H 0.070 0.930 37 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -16.680 7.388 8.777 20.244 hybrid contribution -0.030 0.698 -0.470 0.841 sum -16.710 8.085 8.307 20.337 Atomic orbital electron populations 1.21778 0.74681 1.04260 1.02987 1.48488 1.06387 1.03963 1.57843 1.22482 0.91282 0.93275 1.02771 1.21437 0.96925 0.94670 1.16190 1.22295 0.92881 0.94000 0.98011 1.20000 0.89374 0.97647 0.97479 0.89613 1.21463 0.97667 1.00043 0.94763 1.21960 0.95852 0.99350 1.00111 1.21518 0.96587 0.99483 0.82896 1.47705 1.26588 1.55965 1.06177 1.18363 0.84879 0.78471 0.81752 1.90221 1.71391 1.63167 1.26032 1.20751 1.02709 1.30748 1.02694 0.89093 1.25712 0.94630 0.91861 0.99161 1.69566 1.15558 1.28242 1.32626 0.85331 0.80524 0.74994 0.79828 1.20246 1.25098 1.19254 1.21166 0.84513 0.92906 1.00718 1.77346 1.01457 1.07577 1.25572 0.91087 0.89742 0.89483 0.81170 0.83415 0.92373 0.91847 0.91349 0.91458 0.93469 0.88269 0.90872 0.92957 0.89504 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.78 11.47 59.85 0.69 1.46 16 2 N -0.38 -4.78 4.01 -68.16 -0.27 -5.06 16 3 C 0.05 0.53 11.49 -17.22 -0.20 0.33 16 4 C -0.26 -3.56 9.96 -40.01 -0.40 -3.96 16 5 C 0.10 1.52 6.13 -82.40 -0.51 1.01 16 6 C -0.02 -0.39 2.80 -91.65 -0.26 -0.65 16 7 H 0.09 1.61 8.14 -51.93 -0.42 1.19 16 8 C -0.10 -1.46 5.15 -26.69 -0.14 -1.60 16 9 C -0.13 -2.03 6.08 -26.61 -0.16 -2.19 16 10 C 0.12 2.15 6.28 -3.71 -0.02 2.13 16 11 N -0.63 -13.81 2.97 -174.43 -0.52 -14.33 16 12 C 0.56 15.04 7.21 -12.98 -0.09 14.95 16 13 O -0.62 -18.26 12.12 5.20 0.06 -18.20 16 14 C -0.53 -15.08 9.08 -35.63 -0.32 -15.40 16 15 H 0.09 2.54 6.42 -52.49 -0.34 2.20 16 16 C 0.10 2.99 5.52 -17.36 -0.10 2.90 16 17 N -0.83 -23.73 13.92 55.55 0.77 -22.96 16 18 Si 0.96 25.82 25.83 -169.99 -4.39 21.43 16 19 H -0.28 -7.66 7.11 56.52 0.40 -7.26 16 20 H -0.32 -8.10 7.11 56.52 0.40 -7.70 16 21 H -0.27 -7.53 6.82 56.52 0.39 -7.14 16 22 C 0.13 2.51 5.42 -3.72 -0.02 2.49 16 23 N -0.30 -4.82 12.58 33.67 0.42 -4.39 16 24 H 0.07 0.43 8.14 -51.92 -0.42 0.00 16 25 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 26 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 27 H 0.17 1.19 8.06 -52.48 -0.42 0.77 16 28 H 0.15 1.79 7.30 -52.49 -0.38 1.41 16 29 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 30 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 31 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 32 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 33 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 34 H 0.10 1.95 5.60 -51.93 -0.29 1.66 16 35 H 0.28 7.41 8.29 -40.82 -0.34 7.08 16 36 H 0.05 0.89 7.05 -51.93 -0.37 0.52 16 37 H 0.09 1.88 6.99 -51.93 -0.36 1.52 16 LS Contribution 302.04 15.07 4.55 4.55 Total: -1.00 -34.75 302.04 -6.02 -40.76 By element: Atomic # 1 Polarization: 1.84 SS G_CDS: -5.12 Total: -3.28 kcal Atomic # 6 Polarization: 3.01 SS G_CDS: -1.53 Total: 1.48 kcal Atomic # 7 Polarization: -47.14 SS G_CDS: 0.40 Total: -46.74 kcal Atomic # 8 Polarization: -18.26 SS G_CDS: 0.06 Total: -18.20 kcal Atomic # 14 Polarization: 25.82 SS G_CDS: -4.39 Total: 21.43 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -34.75 -6.02 -40.76 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000409440758.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.146 kcal (2) G-P(sol) polarization free energy of solvation -34.745 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.401 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.016 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.762 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.384 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds