Wall clock time and date at job start Mon Mar 30 2020 04:18:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.34950 * 126.03844 * 2 1 4 4 C 1.35313 * 107.74708 * 179.75641 * 3 2 1 5 5 C 1.39867 * 107.92057 * 0.39026 * 4 3 2 6 6 C 1.50704 * 125.89773 * 179.86319 * 5 4 3 7 7 H 1.08998 * 109.52134 * 204.79874 * 6 5 4 8 8 C 1.53040 * 109.49273 * 84.72273 * 6 5 4 9 9 C 1.53041 * 109.52499 * 178.67650 * 8 6 5 10 10 C 1.53197 * 109.31443 * 61.36726 * 9 8 6 11 11 N 1.46920 * 108.77425 * 305.36742 * 10 9 8 12 12 C 1.34782 * 120.63340 * 233.58245 * 11 10 9 13 13 O 1.21683 * 120.00148 * 174.82665 * 12 11 10 14 14 C 1.46378 * 119.99303 * 354.83172 * 12 11 10 15 15 H 1.08000 * 120.00413 * 342.41582 * 14 12 11 16 16 C 1.40053 * 119.99427 * 162.42266 * 14 12 11 17 17 N 1.30678 * 119.99464 * 170.18364 * 16 14 12 18 18 Si 1.86797 * 120.00268 * 350.18536 * 16 14 12 19 19 H 1.48496 * 109.47204 * 84.76379 * 18 16 14 20 20 H 1.48502 * 109.46967 * 204.76277 * 18 16 14 21 21 H 1.48497 * 109.47181 * 324.76335 * 18 16 14 22 22 C 1.46925 * 118.73995 * 53.60724 * 11 10 9 23 23 N 1.30837 * 108.20153 * 359.60684 * 5 4 3 24 24 H 1.09009 * 109.46413 * 270.02316 * 1 2 3 25 25 H 1.08997 * 109.47418 * 30.02158 * 1 2 3 26 26 H 1.09000 * 109.46999 * 150.02797 * 1 2 3 27 27 H 1.08003 * 126.12279 * 0.02562 * 3 2 1 28 28 H 1.08001 * 126.03764 * 180.27792 * 4 3 2 29 29 H 1.08996 * 109.46635 * 58.66008 * 8 6 5 30 30 H 1.09000 * 109.45773 * 298.68259 * 8 6 5 31 31 H 1.08997 * 109.49872 * 181.31916 * 9 8 6 32 32 H 1.09004 * 109.50028 * 301.38622 * 9 8 6 33 33 H 1.09004 * 109.58598 * 65.15524 * 10 9 8 34 34 H 1.08998 * 109.58890 * 185.57667 * 10 9 8 35 35 H 0.96998 * 119.99352 * 180.02562 * 17 16 14 36 36 H 1.08998 * 109.58824 * 66.17893 * 22 11 10 37 37 H 1.09002 * 109.58750 * 186.59850 * 22 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2589 1.0912 0.0000 4 6 3.5437 0.6666 0.0055 5 6 3.5347 -0.7321 -0.0001 6 6 4.7497 -1.6236 0.0002 7 1 4.4931 -2.5892 -0.4354 8 6 5.2354 -1.8244 1.4375 9 6 6.4494 -2.7562 1.4417 10 6 7.5824 -2.1159 0.6335 11 7 7.0793 -1.7864 -0.7070 12 6 7.7213 -2.2241 -1.8083 13 8 7.2444 -2.0252 -2.9100 14 6 8.9921 -2.9389 -1.6789 15 1 9.5570 -2.8744 -0.7607 16 6 9.4756 -3.7063 -2.7461 17 7 10.6905 -4.1861 -2.7080 18 14 8.3838 -4.0439 -4.2237 19 1 8.4766 -2.9093 -5.1772 20 1 8.8301 -5.2916 -4.8940 21 1 6.9770 -4.1993 -3.7746 22 6 5.8633 -0.9701 -0.8242 23 7 2.2892 -1.1327 -0.0001 24 1 -0.3632 0.0004 1.0278 25 1 -0.3634 0.8897 -0.5141 26 1 -0.3633 -0.8902 -0.5134 27 1 1.9281 2.1193 0.0004 28 1 4.4210 1.2964 0.0112 29 1 4.4363 -2.2665 2.0325 30 1 5.5155 -0.8612 1.8641 31 1 6.7806 -2.9176 2.4676 32 1 6.1766 -3.7113 0.9930 33 1 7.9179 -1.2063 1.1317 34 1 8.4130 -2.8167 0.5500 35 1 11.0254 -4.7173 -3.4472 36 1 6.0585 0.0329 -0.4449 37 1 5.5596 -0.9149 -1.8696 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000409440758.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:18:17 Heat of formation + Delta-G solvation = 5.258085 kcal Electronic energy + Delta-G solvation = -19873.016682 eV Core-core repulsion = 16843.456718 eV Total energy + Delta-G solvation = -3029.559964 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.137 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -42.19157 -40.49185 -38.10977 -35.02320 -34.90382 -33.11942 -31.95732 -31.03734 -28.92660 -27.13774 -25.87547 -24.35814 -22.41001 -22.05491 -20.79072 -20.13887 -18.61306 -18.06103 -17.71921 -16.81376 -16.32363 -15.97306 -15.70057 -15.44642 -14.95660 -14.92827 -14.60763 -14.35509 -14.04676 -13.82889 -13.69693 -13.46771 -13.32879 -13.20539 -12.89436 -12.57396 -12.25665 -12.00270 -11.81207 -11.56809 -11.46800 -11.35431 -11.19013 -10.18714 -10.02581 -9.47574 -9.25949 -8.79126 -6.98012 0.96346 1.30705 1.33443 1.55949 1.68469 1.83041 2.08369 2.32688 2.68375 3.29402 3.52862 3.81502 3.93615 4.05353 4.09970 4.21752 4.35175 4.37771 4.44827 4.66024 4.68301 4.71571 4.76104 4.85718 4.93780 4.95960 5.02795 5.05600 5.15952 5.25348 5.28781 5.48180 5.65810 5.71639 6.01718 6.21864 6.25296 6.63758 6.77914 7.16152 7.99167 8.26913 Molecular weight = 263.14amu Principal moments of inertia in cm(-1) A = 0.029698 B = 0.005100 C = 0.004662 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 942.601965 B = 5488.889063 C = 6004.423265 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.094 3.906 2 N -0.384 5.384 3 C 0.066 3.934 4 C -0.288 4.288 5 C 0.075 3.925 6 C -0.015 4.015 7 H 0.052 0.948 8 C -0.091 4.091 9 C -0.126 4.126 10 C 0.113 3.887 11 N -0.630 5.630 12 C 0.550 3.450 13 O -0.650 6.650 14 C -0.549 4.549 15 H 0.089 0.911 16 C 0.075 3.925 17 N -0.848 5.848 18 Si 1.002 2.998 19 H -0.292 1.292 20 H -0.293 1.293 21 H -0.294 1.294 22 C 0.136 3.864 23 N -0.342 5.342 24 H 0.088 0.912 25 H 0.119 0.881 26 H 0.081 0.919 27 H 0.219 0.781 28 H 0.158 0.842 29 H 0.068 0.932 30 H 0.083 0.917 31 H 0.104 0.896 32 H 0.047 0.953 33 H 0.075 0.925 34 H 0.079 0.921 35 H 0.292 0.708 36 H 0.080 0.920 37 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.205 10.027 11.007 22.753 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.046 4.046 2 N -0.166 5.166 3 C -0.080 4.080 4 C -0.317 4.317 5 C -0.090 4.090 6 C -0.036 4.036 7 H 0.071 0.929 8 C -0.129 4.129 9 C -0.164 4.164 10 C -0.009 4.009 11 N -0.362 5.362 12 C 0.357 3.643 13 O -0.544 6.544 14 C -0.585 4.585 15 H 0.107 0.893 16 C -0.141 4.141 17 N -0.479 5.479 18 Si 0.834 3.166 19 H -0.219 1.219 20 H -0.222 1.222 21 H -0.221 1.221 22 C 0.012 3.988 23 N -0.166 5.166 24 H 0.107 0.893 25 H 0.137 0.863 26 H 0.100 0.900 27 H 0.236 0.764 28 H 0.176 0.824 29 H 0.087 0.913 30 H 0.102 0.898 31 H 0.123 0.877 32 H 0.066 0.934 33 H 0.093 0.907 34 H 0.098 0.902 35 H 0.102 0.898 36 H 0.098 0.902 37 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -18.237 9.039 10.457 22.884 hybrid contribution 0.331 0.269 -0.928 1.021 sum -17.907 9.308 9.529 22.318 Atomic orbital electron populations 1.22184 0.72012 1.05753 1.04633 1.48886 1.07924 1.03349 1.56446 1.23180 0.90283 0.94825 0.99741 1.21659 0.98647 0.93603 1.17767 1.22146 0.92462 0.95006 0.99428 1.19767 0.89450 0.96085 0.98338 0.92912 1.21413 0.97425 1.00895 0.93177 1.21910 0.95014 0.98211 1.01271 1.21751 0.97195 1.00572 0.81408 1.47693 1.26885 1.55180 1.06477 1.18357 0.84910 0.78482 0.82526 1.90190 1.72051 1.64469 1.27730 1.20958 1.03618 1.31170 1.02745 0.89289 1.26123 0.95292 0.92226 1.00433 1.69555 1.15772 1.28929 1.33610 0.84781 0.78219 0.75290 0.78299 1.21876 1.22202 1.22072 1.21239 0.84061 0.94009 0.99490 1.77239 1.02068 1.10042 1.27209 0.89329 0.86263 0.90042 0.76447 0.82436 0.91346 0.89837 0.87722 0.93373 0.90653 0.90219 0.89798 0.90166 0.92878 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.11 11.47 127.77 1.47 2.58 16 2 N -0.38 -8.60 4.01 -369.56 -1.48 -10.09 16 3 C 0.07 1.26 11.49 83.54 0.96 2.22 16 4 C -0.29 -7.17 9.96 21.99 0.22 -6.95 16 5 C 0.08 2.34 6.13 43.10 0.26 2.61 16 6 C -0.01 -0.50 2.80 -11.46 -0.03 -0.53 16 7 H 0.05 2.08 8.14 -2.39 -0.02 2.06 16 8 C -0.09 -2.46 5.15 30.62 0.16 -2.30 16 9 C -0.13 -3.59 6.08 30.67 0.19 -3.40 16 10 C 0.11 3.98 6.28 86.37 0.54 4.52 16 11 N -0.63 -27.82 2.97 -824.01 -2.45 -30.27 16 12 C 0.55 30.47 7.21 86.36 0.62 31.09 16 13 O -0.65 -39.75 12.12 -4.29 -0.05 -39.80 16 14 C -0.55 -31.62 9.08 24.83 0.23 -31.40 16 15 H 0.09 5.05 6.42 -2.91 -0.02 5.03 16 16 C 0.08 4.37 5.52 85.30 0.47 4.84 16 17 N -0.85 -48.54 13.92 21.84 0.30 -48.24 16 18 Si 1.00 54.09 25.83 68.60 1.77 55.86 16 19 H -0.29 -16.34 7.11 99.48 0.71 -15.63 16 20 H -0.29 -14.29 7.11 99.48 0.71 -13.58 16 21 H -0.29 -17.01 6.82 99.48 0.68 -16.33 16 22 C 0.14 5.21 5.42 86.36 0.47 5.68 16 23 N -0.34 -10.85 12.58 -47.38 -0.60 -11.45 16 24 H 0.09 0.77 8.14 -2.38 -0.02 0.75 16 25 H 0.12 0.59 8.14 -2.39 -0.02 0.57 16 26 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 27 H 0.22 1.86 8.06 -2.91 -0.02 1.84 16 28 H 0.16 3.44 7.30 -2.91 -0.02 3.42 16 29 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 30 H 0.08 1.97 8.14 -2.39 -0.02 1.95 16 31 H 0.10 2.28 8.14 -2.39 -0.02 2.26 16 32 H 0.05 1.56 8.14 -2.38 -0.02 1.54 16 33 H 0.08 2.25 8.14 -2.39 -0.02 2.24 16 34 H 0.08 3.13 5.60 -2.39 -0.01 3.12 16 35 H 0.29 15.26 8.29 -92.71 -0.77 14.49 16 36 H 0.08 2.62 7.05 -2.39 -0.02 2.60 16 37 H 0.05 2.39 6.99 -2.39 -0.02 2.37 16 Total: -1.00 -77.64 302.04 4.08 -73.55 By element: Atomic # 1 Polarization: 0.45 SS G_CDS: 1.04 Total: 1.49 kcal Atomic # 6 Polarization: 3.39 SS G_CDS: 5.55 Total: 8.94 kcal Atomic # 7 Polarization: -95.82 SS G_CDS: -4.22 Total: -100.04 kcal Atomic # 8 Polarization: -39.75 SS G_CDS: -0.05 Total: -39.80 kcal Atomic # 14 Polarization: 54.09 SS G_CDS: 1.77 Total: 55.86 kcal Total: -77.64 4.08 -73.55 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000409440758.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.811 kcal (2) G-P(sol) polarization free energy of solvation -77.638 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.173 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.085 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.553 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.258 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds