Wall clock time and date at job start Mon Mar 30 2020 05:25:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.47266 * 2 1 4 4 C 1.53004 * 109.46911 * 240.00019 * 2 1 3 5 5 N 1.46494 * 109.46913 * 120.00306 * 2 1 3 6 6 C 1.34943 * 126.04197 * 75.26066 * 5 2 1 7 7 C 1.35311 * 107.74928 * 180.14507 * 6 5 2 8 8 C 1.50701 * 126.04261 * 179.87298 * 7 6 5 9 9 N 1.46901 * 109.46921 * 269.71381 * 8 7 6 10 10 C 1.47480 * 111.00171 * 265.96874 * 9 8 7 11 11 C 1.53513 * 87.93170 * 221.29782 * 10 9 8 12 12 C 1.50707 * 114.34231 * 139.68464 * 11 10 9 13 13 H 1.07995 * 119.99841 * 266.07605 * 12 11 10 14 14 C 1.37878 * 120.00016 * 86.07420 * 12 11 10 15 15 N 1.31516 * 119.99538 * 0.02562 * 14 12 11 16 16 Si 1.86795 * 119.99781 * 180.02562 * 14 12 11 17 17 H 1.48495 * 109.47646 * 0.02562 * 16 14 12 18 18 H 1.48506 * 109.47095 * 120.00343 * 16 14 12 19 19 H 1.48504 * 109.46991 * 240.00085 * 16 14 12 20 20 C 1.47482 * 110.99764 * 169.99672 * 9 8 7 21 21 C 1.39877 * 107.91877 * 359.61001 * 7 6 5 22 22 N 1.30837 * 108.20185 * 0.24107 * 21 7 6 23 23 H 1.08992 * 109.47264 * 300.00474 * 1 2 3 24 24 H 1.09006 * 109.47141 * 59.99781 * 1 2 3 25 25 H 1.08997 * 109.47353 * 179.97438 * 1 2 3 26 26 H 1.08996 * 109.47530 * 180.02562 * 3 2 1 27 27 H 1.09006 * 109.47220 * 300.00171 * 3 2 1 28 28 H 1.09004 * 109.47029 * 59.99692 * 3 2 1 29 29 H 1.08997 * 109.47223 * 300.00216 * 4 2 1 30 30 H 1.09006 * 109.47054 * 60.00147 * 4 2 1 31 31 H 1.09005 * 109.46778 * 179.97438 * 4 2 1 32 32 H 1.08004 * 126.12516 * 359.97438 * 6 5 2 33 33 H 1.09002 * 109.47060 * 29.71562 * 8 7 6 34 34 H 1.09001 * 109.47380 * 149.71650 * 8 7 6 35 35 H 1.08999 * 113.47664 * 336.06792 * 10 9 8 36 36 H 1.08994 * 113.47488 * 106.52987 * 10 9 8 37 37 H 1.08999 * 114.16922 * 272.37539 * 11 10 9 38 38 H 0.97005 * 119.99326 * 180.02562 * 15 14 12 39 39 H 1.08994 * 113.48196 * 253.46980 * 20 9 8 40 40 H 1.09003 * 113.47819 * 23.94188 * 20 9 8 41 41 H 1.07998 * 125.89897 * 180.26382 * 21 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2493 5 7 2.0183 -0.6907 1.1961 6 6 2.0212 -2.0251 1.3968 7 6 2.5483 -2.2569 2.6213 8 6 2.7420 -3.6070 3.2622 9 7 1.5438 -3.9581 4.0360 10 6 1.6932 -3.5643 5.4494 11 6 1.0367 -4.8981 5.8326 12 6 1.6604 -5.5776 7.0244 13 1 2.4302 -6.3212 6.8803 14 6 1.2483 -5.2500 8.2987 15 7 0.3105 -4.3448 8.4740 16 14 2.0219 -6.0918 9.7759 17 1 3.0454 -7.0629 9.3126 18 1 2.6641 -5.0738 10.6457 19 1 0.9716 -6.8076 10.5440 20 6 1.5947 -5.3635 4.4803 21 6 2.8871 -1.0223 3.1847 22 7 2.5699 -0.0827 2.3313 23 1 -0.3633 0.5139 0.8899 24 1 -0.3634 0.5139 -0.8900 25 1 -0.3634 -1.0276 -0.0005 26 1 3.1300 1.4425 -0.0005 27 1 1.6767 1.9563 -0.8900 28 1 1.6767 1.9563 0.8900 29 1 1.6766 -1.7489 -1.2493 30 1 1.6766 -0.2074 -2.1393 31 1 3.1300 -0.7209 -1.2495 32 1 1.6640 -2.7738 0.7052 33 1 2.9071 -4.3563 2.4880 34 1 3.6062 -3.5736 3.9257 35 1 2.7317 -3.4835 5.7702 36 1 1.0980 -2.6931 5.7226 37 1 -0.0518 -4.8629 5.8781 38 1 0.0208 -4.1140 9.3706 39 1 0.9160 -6.0171 3.9324 40 1 2.6070 -5.7629 4.5426 41 1 3.3338 -0.8708 4.1563 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597194269.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:25:55 Heat of formation + Delta-G solvation = 106.214085 kcal Electronic energy + Delta-G solvation = -19727.458031 eV Core-core repulsion = 16838.108942 eV Total energy + Delta-G solvation = -2889.349089 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.169 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.11260 -38.71421 -36.82529 -32.81605 -31.35396 -30.42638 -28.18941 -27.67173 -27.39601 -25.23426 -24.66209 -22.69498 -21.92376 -19.72559 -19.19265 -18.48840 -16.85216 -16.39695 -15.28140 -14.76803 -14.56368 -14.45490 -14.22859 -13.98340 -13.63503 -13.50683 -13.03009 -12.61803 -12.47259 -12.34304 -12.03119 -11.92987 -11.86083 -11.66722 -11.39380 -11.33155 -11.10858 -10.95069 -10.63333 -10.34207 -10.01821 -9.67737 -9.23243 -9.12079 -8.87016 -8.40648 -8.04842 -7.83229 -6.00917 -4.05163 2.15865 2.59660 3.13013 3.30579 3.38855 3.42378 4.27632 4.44075 4.52868 4.63414 4.95130 5.09199 5.18492 5.23850 5.28548 5.30456 5.39448 5.42286 5.48764 5.54623 5.67873 5.71543 5.76523 5.92874 5.96393 6.08220 6.14812 6.22483 6.45337 6.47979 6.60546 6.75196 6.84951 6.96192 7.25057 7.26654 7.34599 7.78360 7.97416 7.99402 8.20189 8.43381 8.98379 9.59579 11.08662 Molecular weight = 263.17amu Principal moments of inertia in cm(-1) A = 0.041661 B = 0.003664 C = 0.003600 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 671.932399 B = 7639.840692 C = 7775.530974 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.182 3.818 3 C -0.142 4.142 4 C -0.158 4.158 5 N -0.369 5.369 6 C 0.061 3.939 7 C -0.209 4.209 8 C 0.095 3.905 9 N -0.480 5.480 10 C 0.009 3.991 11 C 0.040 3.960 12 C -0.515 4.515 13 H 0.058 0.942 14 C 0.066 3.934 15 N -0.886 5.886 16 Si 0.890 3.110 17 H -0.273 1.273 18 H -0.284 1.284 19 H -0.284 1.284 20 C -0.007 4.007 21 C 0.055 3.945 22 N -0.301 5.301 23 H 0.065 0.935 24 H 0.074 0.926 25 H 0.064 0.936 26 H 0.063 0.937 27 H 0.068 0.932 28 H 0.071 0.929 29 H 0.065 0.935 30 H 0.077 0.923 31 H 0.065 0.935 32 H 0.165 0.835 33 H 0.064 0.936 34 H 0.046 0.954 35 H 0.052 0.948 36 H 0.060 0.940 37 H 0.062 0.938 38 H 0.260 0.740 39 H 0.059 0.941 40 H 0.052 0.948 41 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.215 7.844 -18.380 20.241 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.099 3.901 3 C -0.199 4.199 4 C -0.217 4.217 5 N -0.153 5.153 6 C -0.085 4.085 7 C -0.220 4.220 8 C -0.035 4.035 9 N -0.202 5.202 10 C -0.120 4.120 11 C 0.021 3.979 12 C -0.553 4.553 13 H 0.076 0.924 14 C -0.137 4.137 15 N -0.523 5.523 16 Si 0.718 3.282 17 H -0.197 1.197 18 H -0.210 1.210 19 H -0.210 1.210 20 C -0.136 4.136 21 C -0.131 4.131 22 N -0.122 5.122 23 H 0.085 0.915 24 H 0.092 0.908 25 H 0.083 0.917 26 H 0.082 0.918 27 H 0.087 0.913 28 H 0.090 0.910 29 H 0.084 0.916 30 H 0.096 0.904 31 H 0.084 0.916 32 H 0.182 0.818 33 H 0.082 0.918 34 H 0.064 0.936 35 H 0.070 0.930 36 H 0.079 0.921 37 H 0.080 0.920 38 H 0.070 0.930 39 H 0.078 0.922 40 H 0.071 0.929 41 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges 2.505 9.534 -19.034 21.435 hybrid contribution 1.128 -1.530 1.471 2.404 sum 3.633 8.004 -17.563 19.640 Atomic orbital electron populations 1.22260 0.93181 1.03233 1.03102 1.20609 0.94268 0.93540 0.81654 1.21885 1.02012 0.93198 1.02835 1.22233 1.02204 1.01114 0.96123 1.48705 1.48497 1.04169 1.13887 1.22063 1.01629 0.86123 0.98639 1.19972 1.10648 0.96020 0.95380 1.20872 0.93644 0.91731 0.97209 1.68908 1.32789 1.07620 1.10888 1.24037 0.99599 1.01920 0.86405 1.20099 0.97059 0.90804 0.89970 1.21088 1.21079 1.22617 0.90525 0.92415 1.25021 0.94717 0.94927 0.98990 1.69989 1.28939 1.31449 1.21970 0.86579 0.79276 0.79505 0.82887 1.19734 1.21016 1.20970 1.23999 0.99640 0.90689 0.99242 1.23762 0.99826 0.90524 0.99036 1.77236 1.18334 1.22073 0.94544 0.91543 0.90757 0.91697 0.91797 0.91298 0.91015 0.91581 0.90378 0.91638 0.81816 0.91784 0.93563 0.92964 0.92117 0.91988 0.92982 0.92221 0.92926 0.80596 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.48 8.73 37.16 0.32 -1.16 16 2 C 0.18 1.85 1.24 -131.82 -0.16 1.69 16 3 C -0.14 -1.33 8.09 37.16 0.30 -1.03 16 4 C -0.16 -1.23 8.29 37.16 0.31 -0.92 16 5 N -0.37 -5.11 3.43 -48.66 -0.17 -5.28 16 6 C 0.06 0.88 10.51 -17.23 -0.18 0.70 16 7 C -0.21 -3.42 5.68 -105.05 -0.60 -4.02 16 8 C 0.10 1.64 5.30 -4.97 -0.03 1.62 16 9 N -0.48 -9.88 6.32 -246.08 -1.55 -11.44 16 10 C 0.01 0.22 7.28 -7.54 -0.05 0.16 16 11 C 0.04 1.01 3.76 -91.24 -0.34 0.67 16 12 C -0.51 -14.12 8.83 -34.44 -0.30 -14.42 16 13 H 0.06 1.55 7.81 -52.49 -0.41 1.14 16 14 C 0.07 1.84 5.46 -17.82 -0.10 1.74 16 15 N -0.89 -25.87 13.26 55.43 0.74 -25.14 16 16 Si 0.89 21.18 29.54 -169.99 -5.02 16.16 16 17 H -0.27 -6.37 7.11 56.52 0.40 -5.96 16 18 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 19 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 20 C -0.01 -0.15 7.25 -7.54 -0.05 -0.20 16 21 C 0.05 0.91 11.96 -17.36 -0.21 0.70 16 22 N -0.30 -4.88 11.66 30.63 0.36 -4.53 16 23 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 24 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 25 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 26 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 27 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 28 H 0.07 0.78 8.04 -51.93 -0.42 0.36 16 29 H 0.07 0.49 7.36 -51.93 -0.38 0.11 16 30 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.16 1.94 7.55 -52.48 -0.40 1.54 16 33 H 0.06 1.00 8.08 -51.93 -0.42 0.58 16 34 H 0.05 0.81 7.30 -51.93 -0.38 0.43 16 35 H 0.05 1.21 7.38 -51.93 -0.38 0.83 16 36 H 0.06 1.51 8.14 -51.93 -0.42 1.09 16 37 H 0.06 1.74 8.11 -51.93 -0.42 1.32 16 38 H 0.26 7.20 8.31 -40.82 -0.34 6.87 16 39 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 40 H 0.05 1.08 7.87 -51.93 -0.41 0.68 16 41 H 0.18 2.68 8.06 -52.49 -0.42 2.26 16 LS Contribution 337.06 15.07 5.08 5.08 Total: -1.00 -30.61 337.06 -8.65 -39.26 By element: Atomic # 1 Polarization: 7.33 SS G_CDS: -6.98 Total: 0.35 kcal Atomic # 6 Polarization: -13.38 SS G_CDS: -1.10 Total: -14.47 kcal Atomic # 7 Polarization: -45.75 SS G_CDS: -0.63 Total: -46.38 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.16 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -30.61 -8.65 -39.26 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597194269.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 145.477 kcal (2) G-P(sol) polarization free energy of solvation -30.615 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 114.862 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.648 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.262 kcal (6) G-S(sol) free energy of system = (1) + (5) 106.214 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds