Wall clock time and date at job start Mon Mar 30 2020 05:25:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.47266 * 2 1 4 4 C 1.53004 * 109.46911 * 240.00019 * 2 1 3 5 5 N 1.46494 * 109.46913 * 120.00306 * 2 1 3 6 6 C 1.34943 * 126.04197 * 75.26066 * 5 2 1 7 7 C 1.35311 * 107.74928 * 180.14507 * 6 5 2 8 8 C 1.50701 * 126.04261 * 179.87298 * 7 6 5 9 9 N 1.46901 * 109.46921 * 269.71381 * 8 7 6 10 10 C 1.47480 * 111.00171 * 265.96874 * 9 8 7 11 11 C 1.53513 * 87.93170 * 221.29782 * 10 9 8 12 12 C 1.50707 * 114.34231 * 139.68464 * 11 10 9 13 13 H 1.07995 * 119.99841 * 266.07605 * 12 11 10 14 14 C 1.37878 * 120.00016 * 86.07420 * 12 11 10 15 15 N 1.31516 * 119.99538 * 0.02562 * 14 12 11 16 16 Si 1.86795 * 119.99781 * 180.02562 * 14 12 11 17 17 H 1.48495 * 109.47646 * 0.02562 * 16 14 12 18 18 H 1.48506 * 109.47095 * 120.00343 * 16 14 12 19 19 H 1.48504 * 109.46991 * 240.00085 * 16 14 12 20 20 C 1.47482 * 110.99764 * 169.99672 * 9 8 7 21 21 C 1.39877 * 107.91877 * 359.61001 * 7 6 5 22 22 N 1.30837 * 108.20185 * 0.24107 * 21 7 6 23 23 H 1.08992 * 109.47264 * 300.00474 * 1 2 3 24 24 H 1.09006 * 109.47141 * 59.99781 * 1 2 3 25 25 H 1.08997 * 109.47353 * 179.97438 * 1 2 3 26 26 H 1.08996 * 109.47530 * 180.02562 * 3 2 1 27 27 H 1.09006 * 109.47220 * 300.00171 * 3 2 1 28 28 H 1.09004 * 109.47029 * 59.99692 * 3 2 1 29 29 H 1.08997 * 109.47223 * 300.00216 * 4 2 1 30 30 H 1.09006 * 109.47054 * 60.00147 * 4 2 1 31 31 H 1.09005 * 109.46778 * 179.97438 * 4 2 1 32 32 H 1.08004 * 126.12516 * 359.97438 * 6 5 2 33 33 H 1.09002 * 109.47060 * 29.71562 * 8 7 6 34 34 H 1.09001 * 109.47380 * 149.71650 * 8 7 6 35 35 H 1.08999 * 113.47664 * 336.06792 * 10 9 8 36 36 H 1.08994 * 113.47488 * 106.52987 * 10 9 8 37 37 H 1.08999 * 114.16922 * 272.37539 * 11 10 9 38 38 H 0.97005 * 119.99326 * 180.02562 * 15 14 12 39 39 H 1.08994 * 113.48196 * 253.46980 * 20 9 8 40 40 H 1.09003 * 113.47819 * 23.94188 * 20 9 8 41 41 H 1.07998 * 125.89897 * 180.26382 * 21 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2493 5 7 2.0183 -0.6907 1.1961 6 6 2.0212 -2.0251 1.3968 7 6 2.5483 -2.2569 2.6213 8 6 2.7420 -3.6070 3.2622 9 7 1.5438 -3.9581 4.0360 10 6 1.6932 -3.5643 5.4494 11 6 1.0367 -4.8981 5.8326 12 6 1.6604 -5.5776 7.0244 13 1 2.4302 -6.3212 6.8803 14 6 1.2483 -5.2500 8.2987 15 7 0.3105 -4.3448 8.4740 16 14 2.0219 -6.0918 9.7759 17 1 3.0454 -7.0629 9.3126 18 1 2.6641 -5.0738 10.6457 19 1 0.9716 -6.8076 10.5440 20 6 1.5947 -5.3635 4.4803 21 6 2.8871 -1.0223 3.1847 22 7 2.5699 -0.0827 2.3313 23 1 -0.3633 0.5139 0.8899 24 1 -0.3634 0.5139 -0.8900 25 1 -0.3634 -1.0276 -0.0005 26 1 3.1300 1.4425 -0.0005 27 1 1.6767 1.9563 -0.8900 28 1 1.6767 1.9563 0.8900 29 1 1.6766 -1.7489 -1.2493 30 1 1.6766 -0.2074 -2.1393 31 1 3.1300 -0.7209 -1.2495 32 1 1.6640 -2.7738 0.7052 33 1 2.9071 -4.3563 2.4880 34 1 3.6062 -3.5736 3.9257 35 1 2.7317 -3.4835 5.7702 36 1 1.0980 -2.6931 5.7226 37 1 -0.0518 -4.8629 5.8781 38 1 0.0208 -4.1140 9.3706 39 1 0.9160 -6.0171 3.9324 40 1 2.6070 -5.7629 4.5426 41 1 3.3338 -0.8708 4.1563 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597194269.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:25:54 Heat of formation + Delta-G solvation = 86.530772 kcal Electronic energy + Delta-G solvation = -19728.311564 eV Core-core repulsion = 16838.108942 eV Total energy + Delta-G solvation = -2890.202621 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.169 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -42.25413 -40.44891 -37.69893 -34.80282 -32.86638 -31.53041 -29.67551 -28.34892 -28.30806 -26.96300 -26.46364 -24.16517 -23.23339 -20.93351 -20.42850 -20.16890 -18.59469 -17.65547 -16.71515 -16.32634 -16.10279 -15.62284 -15.53683 -15.43675 -14.82985 -14.56116 -14.30706 -13.85908 -13.53809 -13.31449 -13.17490 -13.14874 -13.09070 -12.99852 -12.79622 -12.73988 -12.42093 -12.21105 -12.17038 -11.94192 -11.60452 -11.27928 -11.14168 -10.83099 -10.48320 -10.25761 -9.62829 -9.22175 -8.12773 -6.24178 1.01793 1.43045 1.44576 1.56523 1.61926 1.86123 2.44509 3.16646 3.44779 3.57406 3.79438 3.90105 3.92465 4.05679 4.25017 4.31608 4.43805 4.54359 4.60951 4.62748 4.69195 4.71443 4.76334 4.82315 4.83940 4.86728 4.93178 4.96176 5.02943 5.07524 5.21979 5.24329 5.28927 5.30050 5.63415 5.65859 5.74723 5.88577 6.26618 6.33300 6.49932 6.80902 6.86189 7.44427 8.97206 Molecular weight = 263.17amu Principal moments of inertia in cm(-1) A = 0.041661 B = 0.003664 C = 0.003600 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 671.932399 B = 7639.840692 C = 7775.530974 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.168 3.832 3 C -0.138 4.138 4 C -0.153 4.153 5 N -0.362 5.362 6 C 0.072 3.928 7 C -0.235 4.235 8 C 0.100 3.900 9 N -0.478 5.478 10 C 0.023 3.977 11 C 0.019 3.981 12 C -0.528 4.528 13 H 0.062 0.938 14 C 0.012 3.988 15 N -0.924 5.924 16 Si 0.959 3.041 17 H -0.262 1.262 18 H -0.282 1.282 19 H -0.280 1.280 20 C 0.010 3.990 21 C 0.036 3.964 22 N -0.323 5.323 23 H 0.042 0.958 24 H 0.106 0.894 25 H 0.062 0.938 26 H 0.053 0.947 27 H 0.101 0.899 28 H 0.049 0.951 29 H 0.071 0.929 30 H 0.106 0.894 31 H 0.058 0.942 32 H 0.194 0.806 33 H 0.088 0.912 34 H 0.043 0.957 35 H 0.051 0.949 36 H 0.034 0.966 37 H 0.026 0.974 38 H 0.261 0.739 39 H 0.075 0.925 40 H 0.064 0.936 41 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.842 7.235 -20.586 22.156 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.087 3.913 3 C -0.196 4.196 4 C -0.211 4.211 5 N -0.146 5.146 6 C -0.075 4.075 7 C -0.247 4.247 8 C -0.029 4.029 9 N -0.200 5.200 10 C -0.106 4.106 11 C -0.001 4.001 12 C -0.566 4.566 13 H 0.080 0.920 14 C -0.187 4.187 15 N -0.563 5.563 16 Si 0.784 3.216 17 H -0.186 1.186 18 H -0.208 1.208 19 H -0.206 1.206 20 C -0.118 4.118 21 C -0.149 4.149 22 N -0.145 5.145 23 H 0.061 0.939 24 H 0.125 0.875 25 H 0.081 0.919 26 H 0.072 0.928 27 H 0.120 0.880 28 H 0.068 0.932 29 H 0.090 0.910 30 H 0.125 0.875 31 H 0.077 0.923 32 H 0.211 0.789 33 H 0.106 0.894 34 H 0.061 0.939 35 H 0.069 0.931 36 H 0.053 0.947 37 H 0.044 0.956 38 H 0.070 0.930 39 H 0.093 0.907 40 H 0.082 0.918 41 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges 3.140 8.934 -21.262 23.276 hybrid contribution 0.883 -1.272 2.037 2.559 sum 4.023 7.661 -19.226 21.083 Atomic orbital electron populations 1.22258 0.92334 1.03256 1.03543 1.21112 0.94942 0.94007 0.81254 1.21881 1.01335 0.92970 1.03370 1.22232 1.01774 1.01512 0.95559 1.49132 1.47088 1.04316 1.14043 1.22468 0.99950 0.86851 0.98264 1.19977 1.12781 0.95408 0.96559 1.20844 0.91789 0.93033 0.97204 1.68845 1.35014 1.06937 1.09230 1.23742 0.98634 0.99711 0.88529 1.20056 0.95111 0.92822 0.92068 1.21436 1.21049 1.22593 0.91499 0.92026 1.25862 0.95205 0.95564 1.02043 1.70124 1.30518 1.33071 1.22614 0.85498 0.78512 0.78510 0.79089 1.18568 1.20766 1.20632 1.23820 1.00145 0.91321 0.96561 1.23888 1.00524 0.91061 0.99440 1.77183 1.19142 1.22631 0.95537 0.93900 0.87526 0.91859 0.92795 0.88038 0.93184 0.90958 0.87498 0.92303 0.78913 0.89354 0.93920 0.93112 0.94733 0.95594 0.92971 0.90695 0.91776 0.80698 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.54 8.73 71.98 0.63 -1.91 16 2 C 0.17 3.05 1.24 3.61 0.00 3.05 16 3 C -0.14 -2.37 8.09 71.98 0.58 -1.79 16 4 C -0.15 -1.83 8.29 71.98 0.60 -1.24 16 5 N -0.36 -9.61 3.43 -307.85 -1.06 -10.66 16 6 C 0.07 1.94 10.51 83.54 0.88 2.82 16 7 C -0.24 -7.53 5.68 -20.14 -0.11 -7.65 16 8 C 0.10 3.33 5.30 85.56 0.45 3.79 16 9 N -0.48 -19.45 6.32 -932.44 -5.89 -25.33 16 10 C 0.02 1.12 7.28 83.58 0.61 1.72 16 11 C 0.02 0.96 3.76 -11.19 -0.04 0.92 16 12 C -0.53 -29.17 8.83 25.60 0.23 -28.95 16 13 H 0.06 3.28 7.81 -2.91 -0.02 3.26 16 14 C 0.01 0.69 5.46 84.65 0.46 1.15 16 15 N -0.92 -55.39 13.26 21.45 0.28 -55.10 16 16 Si 0.96 43.68 29.54 68.60 2.03 45.70 16 17 H -0.26 -11.35 7.11 99.48 0.71 -10.64 16 18 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 19 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 20 C 0.01 0.42 7.25 83.58 0.61 1.03 16 21 C 0.04 1.22 11.96 85.24 1.02 2.24 16 22 N -0.32 -10.56 11.66 -57.02 -0.66 -11.22 16 23 H 0.04 0.90 8.14 -2.39 -0.02 0.88 16 24 H 0.11 1.04 8.14 -2.38 -0.02 1.02 16 25 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 26 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 27 H 0.10 1.05 8.14 -2.38 -0.02 1.03 16 28 H 0.05 1.07 8.04 -2.38 -0.02 1.05 16 29 H 0.07 0.80 7.36 -2.39 -0.02 0.78 16 30 H 0.11 0.70 8.14 -2.38 -0.02 0.68 16 31 H 0.06 0.81 8.14 -2.38 -0.02 0.79 16 32 H 0.19 3.91 7.55 -2.91 -0.02 3.89 16 33 H 0.09 2.51 8.08 -2.39 -0.02 2.49 16 34 H 0.04 1.45 7.30 -2.39 -0.02 1.44 16 35 H 0.05 2.41 7.38 -2.39 -0.02 2.39 16 36 H 0.03 1.79 8.14 -2.39 -0.02 1.77 16 37 H 0.03 1.52 8.11 -2.39 -0.02 1.50 16 38 H 0.26 14.80 8.31 -92.70 -0.77 14.03 16 39 H 0.07 2.88 8.14 -2.39 -0.02 2.86 16 40 H 0.06 2.52 7.87 -2.39 -0.02 2.50 16 41 H 0.18 5.61 8.06 -2.91 -0.02 5.58 16 Total: -1.00 -67.45 337.06 1.59 -65.86 By element: Atomic # 1 Polarization: 14.59 SS G_CDS: 0.98 Total: 15.57 kcal Atomic # 6 Polarization: -30.73 SS G_CDS: 5.91 Total: -24.82 kcal Atomic # 7 Polarization: -94.99 SS G_CDS: -7.33 Total: -102.32 kcal Atomic # 14 Polarization: 43.68 SS G_CDS: 2.03 Total: 45.70 kcal Total: -67.45 1.59 -65.86 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597194269.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 152.391 kcal (2) G-P(sol) polarization free energy of solvation -67.447 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.944 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.587 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.860 kcal (6) G-S(sol) free energy of system = (1) + (5) 86.531 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds