Wall clock time and date at job start Mon Mar 30 2020 05:33:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.08994 * 109.50450 * 2 1 4 4 C 1.53120 * 109.50492 * 239.92020 * 2 1 3 5 5 C 1.53117 * 109.16243 * 182.40487 * 4 2 1 6 6 C 1.53041 * 109.27734 * 57.65569 * 5 4 2 7 7 N 1.46853 * 109.52204 * 300.81969 * 6 5 4 8 8 C 1.46900 * 110.99509 * 185.83932 * 7 6 5 9 9 C 1.50701 * 109.46891 * 66.04923 * 8 7 6 10 10 N 1.30317 * 125.97855 * 270.03496 * 9 8 7 11 11 N 1.39872 * 109.23702 * 179.97438 * 10 9 8 12 12 C 1.46500 * 125.67902 * 179.97438 * 11 10 9 13 13 C 1.34511 * 108.64396 * 359.76285 * 11 10 9 14 14 C 1.39275 * 107.18555 * 0.37362 * 13 11 10 15 15 C 1.41596 * 126.55484 * 179.89518 * 14 13 11 16 16 H 1.08000 * 120.00520 * 179.68583 * 15 14 13 17 17 C 1.39695 * 120.00169 * 359.68403 * 15 14 13 18 18 N 1.31028 * 119.99699 * 359.97438 * 17 15 14 19 19 Si 1.86796 * 120.00227 * 179.72557 * 17 15 14 20 20 H 1.48495 * 109.47361 * 60.00255 * 19 17 15 21 21 H 1.48507 * 109.47267 * 179.97438 * 19 17 15 22 22 H 1.48499 * 109.47080 * 300.00053 * 19 17 15 23 23 C 1.46845 * 111.19669 * 61.74454 * 7 6 5 24 24 H 1.09003 * 109.47256 * 180.02562 * 1 2 3 25 25 H 1.08998 * 109.47375 * 300.07764 * 1 2 3 26 26 H 1.08996 * 109.47609 * 60.07769 * 1 2 3 27 27 H 1.09004 * 109.52243 * 62.49825 * 4 2 1 28 28 H 1.09001 * 109.57402 * 302.34298 * 4 2 1 29 29 H 1.09000 * 109.50361 * 297.71078 * 5 4 2 30 30 H 1.08999 * 109.53651 * 177.61431 * 5 4 2 31 31 H 1.09001 * 109.45945 * 180.80485 * 6 5 4 32 32 H 1.08997 * 109.45516 * 60.82957 * 6 5 4 33 33 H 1.08992 * 109.47236 * 306.04763 * 8 7 6 34 34 H 1.09001 * 109.46829 * 186.04352 * 8 7 6 35 35 H 1.09002 * 109.46881 * 90.02745 * 12 11 10 36 36 H 1.08996 * 109.46960 * 210.02132 * 12 11 10 37 37 H 1.08994 * 109.47205 * 330.02793 * 12 11 10 38 38 H 1.08002 * 126.40612 * 180.23027 * 13 11 10 39 39 H 0.97000 * 120.00251 * 179.97438 * 18 17 15 40 40 H 1.09003 * 109.46310 * 58.26913 * 23 7 6 41 41 H 1.08994 * 109.46114 * 178.23969 * 23 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8938 1.0274 0.0000 4 6 2.0412 -0.7234 -1.2489 5 6 3.5711 -0.7715 -1.2110 6 6 4.0229 -1.4731 0.0720 7 7 3.5092 -0.7425 1.2377 8 6 4.0372 -1.3068 2.4870 9 6 5.5259 -1.0815 2.5502 10 7 6.4424 -1.8896 2.0972 11 7 7.7044 -1.3366 2.3382 12 6 8.9871 -1.9448 1.9762 13 6 7.5441 -0.1512 2.9534 14 6 6.1749 0.0479 3.1128 15 6 5.5498 1.1664 3.7155 16 1 4.4727 1.2140 3.7789 17 6 6.3263 2.2083 4.2282 18 7 7.6331 2.1503 4.1518 19 14 5.5015 3.6874 5.0164 20 1 4.6890 3.2413 6.1765 21 1 6.5386 4.6449 5.4781 22 1 4.6214 4.3518 4.0218 23 6 2.0409 -0.7239 1.2479 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3634 0.5150 0.8893 26 1 -0.3634 0.5126 -0.8906 27 1 1.7156 -0.1863 -2.1399 28 1 1.6452 -1.7387 -1.2707 29 1 3.9677 0.2436 -1.2297 30 1 3.9401 -1.3224 -2.0762 31 1 5.1120 -1.4963 0.1089 32 1 3.6372 -2.4925 0.0834 33 1 3.8299 -2.3763 2.5188 34 1 3.5595 -0.8187 3.3365 35 1 9.2723 -1.6223 0.9747 36 1 9.7506 -1.6339 2.6891 37 1 8.8926 -3.0304 1.9951 38 1 8.3302 0.5195 3.2674 39 1 8.1723 2.8740 4.5074 40 1 1.6647 -1.7469 1.2538 41 1 1.6905 -0.2030 2.1389 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000675054282.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:33:10 Heat of formation + Delta-G solvation = 61.784899 kcal Electronic energy + Delta-G solvation = -20445.716037 eV Core-core repulsion = 17554.440354 eV Total energy + Delta-G solvation = -2891.275683 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.169 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -39.41545 -38.50176 -34.28046 -33.34196 -31.85154 -31.41125 -28.51799 -27.52897 -26.24417 -25.46860 -23.61887 -22.39164 -21.26446 -19.62324 -19.29347 -18.02170 -16.69939 -15.45928 -15.27271 -14.78311 -14.20418 -14.16847 -13.97290 -13.92235 -13.84224 -12.77398 -12.69247 -12.45516 -12.22845 -12.04621 -11.78189 -11.68564 -11.36713 -11.26819 -11.02950 -10.98099 -10.82707 -10.70462 -10.35998 -10.33317 -10.00889 -9.95847 -9.57678 -9.10066 -8.81757 -7.79945 -7.54992 -6.94455 -6.28618 -3.85393 3.21067 3.26948 3.31295 3.40809 3.97754 4.24329 4.29222 4.68116 4.95140 5.09018 5.15022 5.40678 5.60323 5.66407 5.68517 5.73561 5.75737 5.84570 5.89161 5.91649 5.94985 5.98469 6.05996 6.07136 6.14187 6.18267 6.26460 6.40437 6.44619 6.47154 6.63404 6.69870 7.03454 7.41422 7.61073 7.71303 7.75849 7.95128 8.04921 8.54094 8.95226 9.21607 9.30793 9.53220 10.72889 Molecular weight = 263.17amu Principal moments of inertia in cm(-1) A = 0.014954 B = 0.007253 C = 0.005291 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1871.949207 B = 3859.472653 C = 5291.136395 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.091 4.091 3 H 0.080 0.920 4 C -0.112 4.112 5 C -0.117 4.117 6 C 0.060 3.940 7 N -0.525 5.525 8 C 0.160 3.840 9 C 0.018 3.982 10 N -0.338 5.338 11 N -0.393 5.393 12 C 0.122 3.878 13 C -0.056 4.056 14 C -0.027 4.027 15 C -0.413 4.413 16 H 0.069 0.931 17 C 0.054 3.946 18 N -0.850 5.850 19 Si 0.911 3.089 20 H -0.273 1.273 21 H -0.285 1.285 22 H -0.271 1.271 23 C 0.064 3.936 24 H 0.050 0.950 25 H 0.055 0.945 26 H 0.052 0.948 27 H 0.057 0.943 28 H 0.054 0.946 29 H 0.070 0.930 30 H 0.058 0.942 31 H 0.085 0.915 32 H 0.021 0.979 33 H 0.026 0.974 34 H 0.084 0.916 35 H 0.050 0.950 36 H 0.070 0.930 37 H 0.066 0.934 38 H 0.191 0.809 39 H 0.268 0.732 40 H 0.024 0.976 41 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.821 -4.328 -6.559 10.406 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.110 4.110 3 H 0.098 0.902 4 C -0.150 4.150 5 C -0.154 4.154 6 C -0.068 4.068 7 N -0.249 5.249 8 C 0.031 3.969 9 C -0.147 4.147 10 N -0.164 5.164 11 N -0.181 5.181 12 C -0.021 4.021 13 C -0.198 4.198 14 C -0.037 4.037 15 C -0.448 4.448 16 H 0.087 0.913 17 C -0.153 4.153 18 N -0.484 5.484 19 Si 0.738 3.262 20 H -0.198 1.198 21 H -0.211 1.211 22 H -0.197 1.197 23 C -0.064 4.064 24 H 0.069 0.931 25 H 0.074 0.926 26 H 0.072 0.928 27 H 0.076 0.924 28 H 0.073 0.927 29 H 0.089 0.911 30 H 0.077 0.923 31 H 0.103 0.897 32 H 0.039 0.961 33 H 0.044 0.956 34 H 0.103 0.897 35 H 0.068 0.932 36 H 0.089 0.911 37 H 0.084 0.916 38 H 0.207 0.793 39 H 0.079 0.921 40 H 0.042 0.958 41 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -6.136 -4.811 -7.094 10.541 hybrid contribution -0.512 0.725 0.840 1.222 sum -6.648 -4.086 -6.254 10.000 Atomic orbital electron populations 1.21785 0.95488 1.01360 1.01545 1.21168 0.94490 1.00739 0.94553 0.90164 1.21618 0.96061 0.99878 0.97416 1.21585 0.95238 1.01757 0.96867 1.22038 1.01436 0.93584 0.89736 1.61779 1.06284 1.54639 1.02239 1.20007 0.89466 0.95807 0.91573 1.21820 0.93269 0.95880 1.03735 1.76234 0.88869 1.24450 1.26803 1.47595 1.03426 1.17265 1.49838 1.21328 0.82736 0.98206 0.99876 1.23938 0.99909 0.89140 1.06805 1.17889 0.90205 0.94305 1.01256 1.18696 0.93548 1.00571 1.31939 0.91290 1.25515 0.94618 0.99166 0.96019 1.69435 1.05031 1.32234 1.41683 0.86317 0.79145 0.81068 0.79652 1.19814 1.21074 1.19666 1.22078 0.88136 0.98071 0.98162 0.93101 0.92603 0.92842 0.92415 0.92731 0.91145 0.92289 0.89688 0.96086 0.95585 0.89727 0.93152 0.91084 0.91551 0.79282 0.92075 0.95769 0.90866 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.56 9.20 37.15 0.34 -1.22 16 2 C -0.09 -1.23 2.88 -90.54 -0.26 -1.49 16 3 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16 4 C -0.11 -1.45 5.29 -26.61 -0.14 -1.59 16 5 C -0.12 -1.76 6.09 -26.65 -0.16 -1.92 16 6 C 0.06 1.08 5.31 -3.83 -0.02 1.06 16 7 N -0.52 -9.99 4.65 -236.11 -1.10 -11.08 16 8 C 0.16 3.34 5.33 -4.98 -0.03 3.31 16 9 C 0.02 0.45 5.92 -81.84 -0.48 -0.03 16 10 N -0.34 -8.26 11.57 34.00 0.39 -7.87 16 11 N -0.39 -9.34 3.98 -67.19 -0.27 -9.61 16 12 C 0.12 2.15 11.44 59.85 0.68 2.83 16 13 C -0.06 -1.48 10.46 -15.99 -0.17 -1.65 16 14 C -0.03 -0.74 5.94 -106.84 -0.63 -1.37 16 15 C -0.41 -11.42 9.15 -37.76 -0.35 -11.77 16 16 H 0.07 1.85 7.37 -52.49 -0.39 1.46 16 17 C 0.05 1.45 5.49 -17.35 -0.10 1.35 16 18 N -0.85 -23.00 10.33 55.54 0.57 -22.42 16 19 Si 0.91 20.36 29.56 -169.99 -5.02 15.34 16 20 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 21 H -0.29 -6.26 7.11 56.52 0.40 -5.86 16 22 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 23 C 0.06 0.99 4.74 -3.83 -0.02 0.97 16 24 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 25 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 26 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 27 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 28 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 29 H 0.07 1.16 8.14 -51.93 -0.42 0.73 16 30 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 31 H 0.08 1.78 6.44 -51.93 -0.33 1.45 16 32 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 33 H 0.03 0.51 8.12 -51.93 -0.42 0.09 16 34 H 0.08 1.74 7.45 -51.93 -0.39 1.35 16 35 H 0.05 0.81 8.14 -51.93 -0.42 0.38 16 36 H 0.07 1.12 8.14 -51.93 -0.42 0.69 16 37 H 0.07 1.05 8.14 -51.93 -0.42 0.62 16 38 H 0.19 5.17 5.75 -52.49 -0.30 4.87 16 39 H 0.27 6.78 8.30 -40.82 -0.34 6.44 16 40 H 0.02 0.36 8.14 -51.93 -0.42 -0.07 16 41 H 0.07 1.11 8.01 -51.93 -0.42 0.70 16 LS Contribution 325.93 15.07 4.91 4.91 Total: -1.00 -29.98 325.93 -8.72 -38.70 By element: Atomic # 1 Polarization: 10.43 SS G_CDS: -6.88 Total: 3.55 kcal Atomic # 6 Polarization: -10.18 SS G_CDS: -1.33 Total: -11.51 kcal Atomic # 7 Polarization: -50.59 SS G_CDS: -0.40 Total: -50.99 kcal Atomic # 14 Polarization: 20.36 SS G_CDS: -5.02 Total: 15.34 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -29.98 -8.72 -38.70 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000675054282.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.480 kcal (2) G-P(sol) polarization free energy of solvation -29.977 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.503 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.718 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.695 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.785 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds