Wall clock time and date at job start Mon Mar 30 2020 05:33:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.08994 * 109.50450 * 2 1 4 4 C 1.53120 * 109.50492 * 239.92020 * 2 1 3 5 5 C 1.53117 * 109.16243 * 182.40487 * 4 2 1 6 6 C 1.53041 * 109.27734 * 57.65569 * 5 4 2 7 7 N 1.46853 * 109.52204 * 300.81969 * 6 5 4 8 8 C 1.46900 * 110.99509 * 185.83932 * 7 6 5 9 9 C 1.50701 * 109.46891 * 66.04923 * 8 7 6 10 10 N 1.30317 * 125.97855 * 270.03496 * 9 8 7 11 11 N 1.39872 * 109.23702 * 179.97438 * 10 9 8 12 12 C 1.46500 * 125.67902 * 179.97438 * 11 10 9 13 13 C 1.34511 * 108.64396 * 359.76285 * 11 10 9 14 14 C 1.39275 * 107.18555 * 0.37362 * 13 11 10 15 15 C 1.41596 * 126.55484 * 179.89518 * 14 13 11 16 16 H 1.08000 * 120.00520 * 179.68583 * 15 14 13 17 17 C 1.39695 * 120.00169 * 359.68403 * 15 14 13 18 18 N 1.31028 * 119.99699 * 359.97438 * 17 15 14 19 19 Si 1.86796 * 120.00227 * 179.72557 * 17 15 14 20 20 H 1.48495 * 109.47361 * 60.00255 * 19 17 15 21 21 H 1.48507 * 109.47267 * 179.97438 * 19 17 15 22 22 H 1.48499 * 109.47080 * 300.00053 * 19 17 15 23 23 C 1.46845 * 111.19669 * 61.74454 * 7 6 5 24 24 H 1.09003 * 109.47256 * 180.02562 * 1 2 3 25 25 H 1.08998 * 109.47375 * 300.07764 * 1 2 3 26 26 H 1.08996 * 109.47609 * 60.07769 * 1 2 3 27 27 H 1.09004 * 109.52243 * 62.49825 * 4 2 1 28 28 H 1.09001 * 109.57402 * 302.34298 * 4 2 1 29 29 H 1.09000 * 109.50361 * 297.71078 * 5 4 2 30 30 H 1.08999 * 109.53651 * 177.61431 * 5 4 2 31 31 H 1.09001 * 109.45945 * 180.80485 * 6 5 4 32 32 H 1.08997 * 109.45516 * 60.82957 * 6 5 4 33 33 H 1.08992 * 109.47236 * 306.04763 * 8 7 6 34 34 H 1.09001 * 109.46829 * 186.04352 * 8 7 6 35 35 H 1.09002 * 109.46881 * 90.02745 * 12 11 10 36 36 H 1.08996 * 109.46960 * 210.02132 * 12 11 10 37 37 H 1.08994 * 109.47205 * 330.02793 * 12 11 10 38 38 H 1.08002 * 126.40612 * 180.23027 * 13 11 10 39 39 H 0.97000 * 120.00251 * 179.97438 * 18 17 15 40 40 H 1.09003 * 109.46310 * 58.26913 * 23 7 6 41 41 H 1.08994 * 109.46114 * 178.23969 * 23 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8938 1.0274 0.0000 4 6 2.0412 -0.7234 -1.2489 5 6 3.5711 -0.7715 -1.2110 6 6 4.0229 -1.4731 0.0720 7 7 3.5092 -0.7425 1.2377 8 6 4.0372 -1.3068 2.4870 9 6 5.5259 -1.0815 2.5502 10 7 6.4424 -1.8896 2.0972 11 7 7.7044 -1.3366 2.3382 12 6 8.9871 -1.9448 1.9762 13 6 7.5441 -0.1512 2.9534 14 6 6.1749 0.0479 3.1128 15 6 5.5498 1.1664 3.7155 16 1 4.4727 1.2140 3.7789 17 6 6.3263 2.2083 4.2282 18 7 7.6331 2.1503 4.1518 19 14 5.5015 3.6874 5.0164 20 1 4.6890 3.2413 6.1765 21 1 6.5386 4.6449 5.4781 22 1 4.6214 4.3518 4.0218 23 6 2.0409 -0.7239 1.2479 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3634 0.5150 0.8893 26 1 -0.3634 0.5126 -0.8906 27 1 1.7156 -0.1863 -2.1399 28 1 1.6452 -1.7387 -1.2707 29 1 3.9677 0.2436 -1.2297 30 1 3.9401 -1.3224 -2.0762 31 1 5.1120 -1.4963 0.1089 32 1 3.6372 -2.4925 0.0834 33 1 3.8299 -2.3763 2.5188 34 1 3.5595 -0.8187 3.3365 35 1 9.2723 -1.6223 0.9747 36 1 9.7506 -1.6339 2.6891 37 1 8.8926 -3.0304 1.9951 38 1 8.3302 0.5195 3.2674 39 1 8.1723 2.8740 4.5074 40 1 1.6647 -1.7469 1.2538 41 1 1.6905 -0.2030 2.1389 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000675054282.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:33:10 Heat of formation + Delta-G solvation = 43.716727 kcal Electronic energy + Delta-G solvation = -20446.499532 eV Core-core repulsion = 17554.440354 eV Total energy + Delta-G solvation = -2892.059177 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.169 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.23626 -39.86762 -35.69796 -35.27925 -33.38599 -32.73948 -30.51801 -29.07010 -27.37889 -27.24535 -25.31828 -23.73972 -22.56777 -21.54182 -20.51475 -19.84889 -18.67831 -17.18389 -16.84850 -16.14473 -15.97290 -15.61151 -15.51686 -15.24633 -14.97819 -14.45343 -14.13985 -13.90315 -13.58540 -13.32235 -13.28302 -13.11875 -13.07578 -12.80243 -12.67180 -12.57023 -12.35683 -12.11301 -11.89772 -11.61395 -11.48443 -11.22056 -11.10982 -11.06867 -10.75924 -9.58018 -9.07763 -8.97432 -8.28559 -5.92561 1.42710 1.45284 1.53127 1.55726 2.25087 2.33005 2.43145 3.16428 3.68517 3.86386 3.95407 4.00287 4.09635 4.20262 4.34473 4.42362 4.49601 4.55618 4.59553 4.69503 4.70485 4.74853 4.77848 4.87717 4.90818 4.98781 5.06842 5.08597 5.14934 5.27115 5.34878 5.41586 5.43521 5.58210 5.68109 5.93454 6.04635 6.23332 6.37988 6.56180 6.98557 7.19798 7.25638 7.56144 8.73441 Molecular weight = 263.17amu Principal moments of inertia in cm(-1) A = 0.014954 B = 0.007253 C = 0.005291 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1871.949207 B = 3859.472653 C = 5291.136395 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.089 4.089 3 H 0.061 0.939 4 C -0.106 4.106 5 C -0.113 4.113 6 C 0.064 3.936 7 N -0.543 5.543 8 C 0.166 3.834 9 C 0.012 3.988 10 N -0.339 5.339 11 N -0.397 5.397 12 C 0.112 3.888 13 C -0.071 4.071 14 C -0.065 4.065 15 C -0.442 4.442 16 H 0.066 0.934 17 C 0.010 3.990 18 N -0.873 5.873 19 Si 0.980 3.020 20 H -0.266 1.266 21 H -0.276 1.276 22 H -0.269 1.269 23 C 0.063 3.937 24 H 0.061 0.939 25 H 0.056 0.944 26 H 0.067 0.933 27 H 0.078 0.922 28 H 0.067 0.933 29 H 0.050 0.950 30 H 0.077 0.923 31 H 0.049 0.951 32 H 0.029 0.971 33 H 0.035 0.965 34 H 0.080 0.920 35 H 0.067 0.933 36 H 0.089 0.911 37 H 0.086 0.914 38 H 0.181 0.819 39 H 0.274 0.726 40 H 0.037 0.963 41 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.268 -4.447 -7.338 11.916 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.108 4.108 3 H 0.079 0.921 4 C -0.143 4.143 5 C -0.150 4.150 6 C -0.064 4.064 7 N -0.269 5.269 8 C 0.037 3.963 9 C -0.154 4.154 10 N -0.165 5.165 11 N -0.185 5.185 12 C -0.029 4.029 13 C -0.214 4.214 14 C -0.075 4.075 15 C -0.477 4.477 16 H 0.084 0.916 17 C -0.195 4.195 18 N -0.507 5.507 19 Si 0.804 3.196 20 H -0.191 1.191 21 H -0.201 1.201 22 H -0.194 1.194 23 C -0.065 4.065 24 H 0.080 0.920 25 H 0.076 0.924 26 H 0.086 0.914 27 H 0.096 0.904 28 H 0.086 0.914 29 H 0.068 0.932 30 H 0.095 0.905 31 H 0.067 0.933 32 H 0.047 0.953 33 H 0.053 0.947 34 H 0.098 0.902 35 H 0.086 0.914 36 H 0.107 0.893 37 H 0.105 0.895 38 H 0.197 0.803 39 H 0.084 0.916 40 H 0.055 0.945 41 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -7.565 -4.957 -7.891 12.003 hybrid contribution 0.025 0.690 1.043 1.251 sum -7.540 -4.267 -6.848 11.043 Atomic orbital electron populations 1.21723 0.92983 1.02336 1.02400 1.21164 0.96478 0.99336 0.93838 0.92095 1.21594 0.93971 1.00867 0.97864 1.21563 0.97187 1.00383 0.95915 1.21966 0.99274 0.94396 0.90739 1.61732 1.08598 1.54925 1.01615 1.19945 0.87357 0.96352 0.92651 1.22291 0.95095 0.94998 1.02985 1.76173 0.89351 1.24519 1.26463 1.47999 1.04818 1.16648 1.49063 1.21721 0.80639 0.99260 1.01288 1.23818 0.99616 0.90318 1.07650 1.18335 0.91217 0.95516 1.02445 1.18916 0.93647 1.01724 1.33415 0.91606 1.26349 0.95225 1.01684 0.96204 1.69522 1.06082 1.33124 1.41989 0.85260 0.78247 0.77410 0.78713 1.19064 1.20119 1.19430 1.22193 0.85800 0.99117 0.99379 0.92019 0.92440 0.91392 0.90358 0.91411 0.93164 0.90465 0.93286 0.95288 0.94666 0.90165 0.91443 0.89279 0.89528 0.80260 0.91606 0.94466 0.91072 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.56 9.20 71.98 0.66 -1.90 16 2 C -0.09 -2.25 2.88 -10.74 -0.03 -2.28 16 3 H 0.06 1.77 8.14 -2.39 -0.02 1.75 16 4 C -0.11 -2.45 5.29 30.67 0.16 -2.28 16 5 C -0.11 -3.27 6.09 30.65 0.19 -3.08 16 6 C 0.06 2.30 5.31 86.33 0.46 2.75 16 7 N -0.54 -20.75 4.65 -900.91 -4.19 -24.94 16 8 C 0.17 7.03 5.33 85.56 0.46 7.49 16 9 C 0.01 0.61 5.92 43.69 0.26 0.87 16 10 N -0.34 -16.81 11.57 -46.36 -0.54 -17.34 16 11 N -0.40 -19.03 3.98 -366.49 -1.46 -20.49 16 12 C 0.11 3.84 11.44 127.77 1.46 5.30 16 13 C -0.07 -3.89 10.46 84.53 0.88 -3.01 16 14 C -0.07 -3.71 5.94 -21.30 -0.13 -3.83 16 15 C -0.44 -25.18 9.15 23.45 0.21 -24.97 16 16 H 0.07 3.64 7.37 -2.91 -0.02 3.62 16 17 C 0.01 0.56 5.49 85.16 0.47 1.03 16 18 N -0.87 -48.09 10.33 21.79 0.23 -47.87 16 19 Si 0.98 42.02 29.56 68.60 2.03 44.04 16 20 H -0.27 -11.02 7.11 99.48 0.71 -10.31 16 21 H -0.28 -11.33 7.11 99.48 0.71 -10.63 16 22 H -0.27 -11.37 7.11 99.48 0.71 -10.66 16 23 C 0.06 1.87 4.74 86.33 0.41 2.28 16 24 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 25 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 26 H 0.07 1.09 8.14 -2.39 -0.02 1.08 16 27 H 0.08 1.53 8.14 -2.38 -0.02 1.51 16 28 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 29 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 30 H 0.08 1.93 8.14 -2.39 -0.02 1.92 16 31 H 0.05 2.09 6.44 -2.39 -0.02 2.07 16 32 H 0.03 0.97 8.14 -2.39 -0.02 0.95 16 33 H 0.04 1.40 8.12 -2.39 -0.02 1.38 16 34 H 0.08 3.39 7.45 -2.39 -0.02 3.37 16 35 H 0.07 2.08 8.14 -2.39 -0.02 2.07 16 36 H 0.09 2.71 8.14 -2.39 -0.02 2.69 16 37 H 0.09 2.60 8.14 -2.39 -0.02 2.58 16 38 H 0.18 10.14 5.75 -2.91 -0.02 10.12 16 39 H 0.27 13.94 8.30 -92.71 -0.77 13.17 16 40 H 0.04 1.02 8.14 -2.39 -0.02 1.00 16 41 H 0.07 2.12 8.01 -2.39 -0.02 2.11 16 Total: -1.00 -65.87 325.93 2.52 -63.35 By element: Atomic # 1 Polarization: 23.89 SS G_CDS: 0.99 Total: 24.88 kcal Atomic # 6 Polarization: -27.09 SS G_CDS: 5.46 Total: -21.63 kcal Atomic # 7 Polarization: -104.69 SS G_CDS: -5.96 Total: -110.65 kcal Atomic # 14 Polarization: 42.02 SS G_CDS: 2.03 Total: 44.04 kcal Total: -65.87 2.52 -63.35 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000675054282.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.066 kcal (2) G-P(sol) polarization free energy of solvation -65.872 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.194 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.523 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.349 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.717 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds