Wall clock time and date at job start Mon Mar 30 2020 04:22:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.34777 * 120.00339 * 2 1 4 4 O 1.21274 * 120.00223 * 175.63817 * 3 2 1 5 5 C 1.50700 * 119.99629 * 355.91410 * 3 2 1 6 6 H 1.08999 * 109.47266 * 319.72247 * 5 3 2 7 7 N 1.46901 * 109.47251 * 199.72740 * 5 3 2 8 8 C 1.52995 * 109.47414 * 79.72456 * 5 3 2 9 9 C 1.52995 * 109.47395 * 184.99867 * 8 5 3 10 10 C 1.50703 * 109.47128 * 180.02562 * 9 8 5 11 11 H 1.08003 * 120.00051 * 359.97438 * 10 9 8 12 12 C 1.37877 * 120.00008 * 180.02562 * 10 9 8 13 13 N 1.31515 * 119.99879 * 0.02562 * 12 10 9 14 14 Si 1.86805 * 119.99988 * 179.97438 * 12 10 9 15 15 H 1.48499 * 109.46865 * 60.00233 * 14 12 10 16 16 H 1.48498 * 109.46943 * 179.97438 * 14 12 10 17 17 H 1.48494 * 109.47205 * 300.00200 * 14 12 10 18 18 C 1.39549 * 119.99775 * 180.02562 * 2 1 3 19 19 C 1.39396 * 120.86149 * 64.89725 * 18 2 1 20 20 C 1.37956 * 119.07468 * 179.77060 * 19 18 2 21 21 N 1.31964 * 120.83325 * 0.52003 * 20 19 18 22 22 C 1.31972 * 121.89771 * 359.72891 * 21 20 19 23 23 C 1.37949 * 120.83820 * 0.02562 * 22 21 20 24 24 H 1.09002 * 109.47157 * 90.00077 * 1 2 3 25 25 H 1.08998 * 109.47281 * 209.99818 * 1 2 3 26 26 H 1.08998 * 109.46776 * 329.99861 * 1 2 3 27 27 H 1.00906 * 110.99538 * 300.00143 * 7 5 3 28 28 H 1.00901 * 111.00217 * 63.95331 * 7 5 3 29 29 H 1.09003 * 109.47010 * 304.99829 * 8 5 3 30 30 H 1.09002 * 109.46917 * 64.99846 * 8 5 3 31 31 H 1.08998 * 109.47423 * 300.00133 * 9 8 5 32 32 H 1.09002 * 109.47105 * 60.00094 * 9 8 5 33 33 H 0.97001 * 119.99599 * 180.02562 * 13 12 10 34 34 H 1.08004 * 120.46125 * 0.02562 * 19 18 2 35 35 H 1.07991 * 119.58279 * 180.22704 * 20 19 18 36 36 H 1.08001 * 119.57739 * 179.97438 * 22 21 20 37 37 H 1.07992 * 120.46061 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3491 1.1687 0.0799 5 6 1.3883 2.4706 -0.0930 6 1 0.5702 2.3687 -0.8060 7 7 2.3008 3.5302 -0.5431 8 6 0.8241 2.8335 1.2820 9 6 -0.0413 4.0895 1.1630 10 6 -0.5965 4.4473 2.5176 11 1 -0.3564 3.8393 3.3773 12 6 -1.4118 5.5502 2.6591 13 7 -1.7054 6.2896 1.6118 14 14 -2.1006 5.9932 4.3380 15 1 -0.9816 6.2511 5.2797 16 1 -2.9405 7.2124 4.2224 17 1 -2.9265 4.8689 4.8467 18 6 2.1627 -1.2086 -0.0005 19 6 2.0805 -2.0811 -1.0845 20 6 2.7895 -3.2640 -1.0481 21 7 3.5293 -3.5773 -0.0012 22 6 3.6286 -2.7804 1.0461 23 6 2.9549 -1.5772 1.0855 24 1 -0.3633 0.0000 -1.0277 25 1 -0.3634 -0.8900 0.5138 26 1 -0.3633 0.8900 0.5139 27 1 3.0685 3.6442 0.1018 28 1 2.6369 3.3457 -1.4764 29 1 0.2175 2.0083 1.6552 30 1 1.6454 3.0224 1.9734 31 1 0.5652 4.9147 0.7898 32 1 -0.8626 3.9006 0.4716 33 1 -2.2787 7.0657 1.7115 34 1 1.4736 -1.8327 -1.9426 35 1 2.7348 -3.9444 -1.8850 36 1 4.2446 -3.0743 1.8831 37 1 3.0403 -0.9300 1.9458 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000691621513.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:22:35 Heat of formation + Delta-G solvation = 1.538143 kcal Electronic energy + Delta-G solvation = -19473.756914 eV Core-core repulsion = 16444.035642 eV Total energy + Delta-G solvation = -3029.721273 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.137 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.99665 -39.48955 -36.07770 -35.45276 -32.88676 -31.54470 -31.44695 -30.19525 -27.03279 -26.72142 -24.45900 -23.63105 -22.60072 -20.51660 -19.57085 -17.77335 -17.11442 -16.67212 -16.30412 -15.97192 -15.52812 -15.18196 -14.76524 -14.45429 -14.06957 -13.87308 -13.81944 -13.46427 -13.19092 -12.63995 -12.21134 -12.05945 -12.02201 -11.64610 -10.90703 -10.78952 -10.63897 -10.30933 -10.12510 -9.86570 -9.77103 -9.45490 -9.37264 -9.08665 -8.88311 -8.45210 -8.28707 -5.98987 -4.01764 0.92153 0.96972 2.51187 2.72970 3.32569 3.37678 3.39700 3.59481 4.25344 4.44421 4.57134 4.69315 4.78634 4.89865 4.91654 4.97378 5.25818 5.27713 5.36231 5.40566 5.52168 5.57465 5.61089 5.68505 5.99911 6.22735 6.32751 6.52585 6.64029 6.95492 7.06171 7.34887 7.67352 7.69219 7.75951 7.88207 8.03406 8.06499 8.41475 9.05747 9.61865 11.11756 Molecular weight = 263.14amu Principal moments of inertia in cm(-1) A = 0.032606 B = 0.004032 C = 0.003876 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 858.520303 B = 6942.504900 C = 7221.723739 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.067 3.933 2 N -0.579 5.579 3 C 0.487 3.513 4 O -0.536 6.536 5 C 0.082 3.918 6 H 0.102 0.898 7 N -0.805 5.805 8 C -0.100 4.100 9 C 0.032 3.968 10 C -0.525 4.525 11 H 0.052 0.948 12 C 0.059 3.941 13 N -0.892 5.892 14 Si 0.889 3.111 15 H -0.277 1.277 16 H -0.287 1.287 17 H -0.278 1.278 18 C 0.192 3.808 19 C -0.180 4.180 20 C 0.107 3.893 21 N -0.491 5.491 22 C 0.109 3.891 23 C -0.160 4.160 24 H 0.063 0.937 25 H 0.074 0.926 26 H 0.101 0.899 27 H 0.349 0.651 28 H 0.335 0.665 29 H 0.057 0.943 30 H 0.055 0.945 31 H 0.036 0.964 32 H 0.014 0.986 33 H 0.261 0.739 34 H 0.136 0.864 35 H 0.158 0.842 36 H 0.159 0.841 37 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.263 -16.447 -5.546 18.137 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 N -0.310 5.310 3 C 0.276 3.724 4 O -0.411 6.411 5 C -0.034 4.034 6 H 0.120 0.880 7 N -0.333 5.333 8 C -0.138 4.138 9 C -0.005 4.005 10 C -0.564 4.564 11 H 0.070 0.930 12 C -0.142 4.142 13 N -0.531 5.531 14 Si 0.717 3.283 15 H -0.203 1.203 16 H -0.213 1.213 17 H -0.203 1.203 18 C 0.092 3.908 19 C -0.202 4.202 20 C -0.050 4.050 21 N -0.201 5.201 22 C -0.048 4.048 23 C -0.182 4.182 24 H 0.082 0.918 25 H 0.093 0.907 26 H 0.119 0.881 27 H 0.163 0.837 28 H 0.147 0.853 29 H 0.076 0.924 30 H 0.074 0.926 31 H 0.054 0.946 32 H 0.032 0.968 33 H 0.070 0.930 34 H 0.154 0.846 35 H 0.176 0.824 36 H 0.176 0.824 37 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 5.620 -16.492 -5.478 18.264 hybrid contribution -0.275 0.290 0.839 0.929 sum 5.345 -16.203 -4.638 17.681 Atomic orbital electron populations 1.22198 0.77126 1.05185 1.02907 1.45667 1.07694 1.03560 1.74045 1.23147 0.88854 0.86449 0.73962 1.90678 1.14555 1.87268 1.48613 1.21902 0.95475 0.84023 1.02016 0.88004 1.59014 1.23945 1.43408 1.06888 1.21780 0.99776 1.01487 0.90713 1.19013 0.93671 0.91218 0.96588 1.21218 1.29592 1.11017 0.94545 0.93017 1.24982 0.96463 0.96337 0.96421 1.69960 1.37019 1.17022 1.29069 0.86708 0.79042 0.77791 0.84732 1.20304 1.21298 1.20336 1.17982 0.93285 0.86574 0.92948 1.22257 1.02931 0.96527 0.98476 1.22623 0.91875 0.94389 0.96155 1.67682 1.17752 1.33675 1.00994 1.22663 0.96156 0.89846 0.96131 1.22329 0.98907 0.98127 0.98843 0.91850 0.90737 0.88092 0.83708 0.85301 0.92434 0.92629 0.94582 0.96778 0.92974 0.84602 0.82450 0.82395 0.84637 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.71 9.71 59.85 0.58 1.29 16 2 N -0.58 -7.60 2.96 -120.63 -0.36 -7.96 16 3 C 0.49 7.62 6.80 -10.98 -0.07 7.54 16 4 O -0.54 -9.80 15.77 5.56 0.09 -9.72 16 5 C 0.08 1.31 2.32 -68.87 -0.16 1.15 16 6 H 0.10 1.52 7.40 -51.93 -0.38 1.14 16 7 N -0.80 -13.11 8.44 -5.66 -0.05 -13.16 16 8 C -0.10 -1.90 4.46 -26.74 -0.12 -2.02 16 9 C 0.03 0.79 4.86 -27.88 -0.14 0.65 16 10 C -0.53 -14.38 9.11 -34.44 -0.31 -14.69 16 11 H 0.05 1.38 7.74 -52.48 -0.41 0.97 16 12 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 13 N -0.89 -26.27 13.29 55.43 0.74 -25.54 16 14 Si 0.89 21.26 29.54 -169.99 -5.02 16.24 16 15 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 16 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 17 H -0.28 -6.49 7.11 56.52 0.40 -6.08 16 18 C 0.19 2.47 4.90 -83.48 -0.41 2.06 16 19 C -0.18 -1.94 9.93 -39.25 -0.39 -2.33 16 20 C 0.11 1.10 11.17 -17.60 -0.20 0.90 16 21 N -0.49 -5.89 10.36 -13.34 -0.14 -6.03 16 22 C 0.11 1.24 11.17 -17.60 -0.20 1.04 16 23 C -0.16 -2.04 9.36 -39.26 -0.37 -2.40 16 24 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 25 H 0.07 0.67 8.05 -51.93 -0.42 0.25 16 26 H 0.10 1.19 4.67 -51.93 -0.24 0.95 16 27 H 0.35 5.77 8.58 -39.29 -0.34 5.43 16 28 H 0.34 4.75 9.06 -39.29 -0.36 4.39 16 29 H 0.06 1.02 6.07 -51.93 -0.32 0.70 16 30 H 0.05 1.12 8.14 -51.93 -0.42 0.69 16 31 H 0.04 0.97 7.75 -51.93 -0.40 0.56 16 32 H 0.01 0.36 8.14 -51.93 -0.42 -0.07 16 33 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 34 H 0.14 1.18 8.06 -52.48 -0.42 0.76 16 35 H 0.16 1.12 8.06 -52.49 -0.42 0.70 16 36 H 0.16 1.36 8.06 -52.49 -0.42 0.94 16 37 H 0.14 1.74 8.06 -52.49 -0.42 1.32 16 LS Contribution 315.22 15.07 4.75 4.75 Total: -1.00 -32.67 315.22 -6.83 -39.49 By element: Atomic # 1 Polarization: 12.10 SS G_CDS: -4.96 Total: 7.15 kcal Atomic # 6 Polarization: -3.35 SS G_CDS: -1.88 Total: -5.23 kcal Atomic # 7 Polarization: -52.88 SS G_CDS: 0.19 Total: -52.69 kcal Atomic # 8 Polarization: -9.80 SS G_CDS: 0.09 Total: -9.72 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.24 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -32.67 -6.83 -39.49 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000691621513.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.031 kcal (2) G-P(sol) polarization free energy of solvation -32.668 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.363 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.825 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.493 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.538 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds