Wall clock time and date at job start Mon Mar 30 2020 04:22:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.34777 * 120.00339 * 2 1 4 4 O 1.21274 * 120.00223 * 175.63817 * 3 2 1 5 5 C 1.50700 * 119.99629 * 355.91410 * 3 2 1 6 6 H 1.08999 * 109.47266 * 319.72247 * 5 3 2 7 7 N 1.46901 * 109.47251 * 199.72740 * 5 3 2 8 8 C 1.52995 * 109.47414 * 79.72456 * 5 3 2 9 9 C 1.52995 * 109.47395 * 184.99867 * 8 5 3 10 10 C 1.50703 * 109.47128 * 180.02562 * 9 8 5 11 11 H 1.08003 * 120.00051 * 359.97438 * 10 9 8 12 12 C 1.37877 * 120.00008 * 180.02562 * 10 9 8 13 13 N 1.31515 * 119.99879 * 0.02562 * 12 10 9 14 14 Si 1.86805 * 119.99988 * 179.97438 * 12 10 9 15 15 H 1.48499 * 109.46865 * 60.00233 * 14 12 10 16 16 H 1.48498 * 109.46943 * 179.97438 * 14 12 10 17 17 H 1.48494 * 109.47205 * 300.00200 * 14 12 10 18 18 C 1.39549 * 119.99775 * 180.02562 * 2 1 3 19 19 C 1.39396 * 120.86149 * 64.89725 * 18 2 1 20 20 C 1.37956 * 119.07468 * 179.77060 * 19 18 2 21 21 N 1.31964 * 120.83325 * 0.52003 * 20 19 18 22 22 C 1.31972 * 121.89771 * 359.72891 * 21 20 19 23 23 C 1.37949 * 120.83820 * 0.02562 * 22 21 20 24 24 H 1.09002 * 109.47157 * 90.00077 * 1 2 3 25 25 H 1.08998 * 109.47281 * 209.99818 * 1 2 3 26 26 H 1.08998 * 109.46776 * 329.99861 * 1 2 3 27 27 H 1.00906 * 110.99538 * 300.00143 * 7 5 3 28 28 H 1.00901 * 111.00217 * 63.95331 * 7 5 3 29 29 H 1.09003 * 109.47010 * 304.99829 * 8 5 3 30 30 H 1.09002 * 109.46917 * 64.99846 * 8 5 3 31 31 H 1.08998 * 109.47423 * 300.00133 * 9 8 5 32 32 H 1.09002 * 109.47105 * 60.00094 * 9 8 5 33 33 H 0.97001 * 119.99599 * 180.02562 * 13 12 10 34 34 H 1.08004 * 120.46125 * 0.02562 * 19 18 2 35 35 H 1.07991 * 119.58279 * 180.22704 * 20 19 18 36 36 H 1.08001 * 119.57739 * 179.97438 * 22 21 20 37 37 H 1.07992 * 120.46061 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3491 1.1687 0.0799 5 6 1.3883 2.4706 -0.0930 6 1 0.5702 2.3687 -0.8060 7 7 2.3008 3.5302 -0.5431 8 6 0.8241 2.8335 1.2820 9 6 -0.0413 4.0895 1.1630 10 6 -0.5965 4.4473 2.5176 11 1 -0.3564 3.8393 3.3773 12 6 -1.4118 5.5502 2.6591 13 7 -1.7054 6.2896 1.6118 14 14 -2.1006 5.9932 4.3380 15 1 -0.9816 6.2511 5.2797 16 1 -2.9405 7.2124 4.2224 17 1 -2.9265 4.8689 4.8467 18 6 2.1627 -1.2086 -0.0005 19 6 2.0805 -2.0811 -1.0845 20 6 2.7895 -3.2640 -1.0481 21 7 3.5293 -3.5773 -0.0012 22 6 3.6286 -2.7804 1.0461 23 6 2.9549 -1.5772 1.0855 24 1 -0.3633 0.0000 -1.0277 25 1 -0.3634 -0.8900 0.5138 26 1 -0.3633 0.8900 0.5139 27 1 3.0685 3.6442 0.1018 28 1 2.6369 3.3457 -1.4764 29 1 0.2175 2.0083 1.6552 30 1 1.6454 3.0224 1.9734 31 1 0.5652 4.9147 0.7898 32 1 -0.8626 3.9006 0.4716 33 1 -2.2787 7.0657 1.7115 34 1 1.4736 -1.8327 -1.9426 35 1 2.7348 -3.9444 -1.8850 36 1 4.2446 -3.0743 1.8831 37 1 3.0403 -0.9300 1.9458 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000691621513.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:22:34 Heat of formation + Delta-G solvation = -21.497394 kcal Electronic energy + Delta-G solvation = -19474.755810 eV Core-core repulsion = 16444.035642 eV Total energy + Delta-G solvation = -3030.720168 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.137 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -42.03754 -40.52091 -37.16258 -36.95005 -34.85057 -32.48729 -32.28651 -31.95346 -28.33893 -27.94770 -26.01313 -24.49551 -23.89394 -22.14130 -20.73132 -18.90075 -18.48179 -18.02530 -17.63917 -16.95364 -16.84656 -16.50275 -16.16035 -15.85109 -15.25037 -14.89391 -14.68205 -14.63474 -14.37087 -14.12309 -13.78293 -13.46312 -13.40899 -12.86394 -12.73863 -12.53558 -12.29332 -11.79148 -11.65296 -11.28258 -11.10033 -11.03814 -10.64588 -10.47804 -10.21001 -9.90820 -9.68844 -8.13160 -6.23211 0.02744 0.10939 1.29271 1.43240 1.45186 1.52844 1.70047 2.45092 2.73909 3.20290 3.36408 3.50351 3.63036 3.87382 3.91855 4.03182 4.07059 4.11216 4.24162 4.43398 4.50863 4.64903 4.68741 4.78523 4.83185 4.94381 5.12226 5.23307 5.37792 5.57820 5.70778 5.83739 5.92542 5.98686 6.11378 6.30172 6.44564 6.86323 6.92097 6.95110 7.45029 8.97693 Molecular weight = 263.14amu Principal moments of inertia in cm(-1) A = 0.032606 B = 0.004032 C = 0.003876 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 858.520303 B = 6942.504900 C = 7221.723739 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.062 3.938 2 N -0.571 5.571 3 C 0.492 3.508 4 O -0.567 6.567 5 C 0.091 3.909 6 H 0.116 0.884 7 N -0.816 5.816 8 C -0.085 4.085 9 C 0.041 3.959 10 C -0.544 4.544 11 H 0.056 0.944 12 C 0.004 3.996 13 N -0.928 5.928 14 Si 0.956 3.044 15 H -0.273 1.273 16 H -0.285 1.285 17 H -0.265 1.265 18 C 0.168 3.832 19 C -0.176 4.176 20 C 0.108 3.892 21 N -0.508 5.508 22 C 0.107 3.893 23 C -0.178 4.178 24 H 0.088 0.912 25 H 0.091 0.909 26 H 0.086 0.914 27 H 0.346 0.654 28 H 0.347 0.653 29 H 0.073 0.927 30 H 0.042 0.958 31 H 0.005 0.995 32 H -0.001 1.001 33 H 0.262 0.738 34 H 0.159 0.841 35 H 0.192 0.808 36 H 0.179 0.821 37 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.764 -18.161 -5.639 19.604 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 N -0.300 5.300 3 C 0.280 3.720 4 O -0.445 6.445 5 C -0.025 4.025 6 H 0.134 0.866 7 N -0.345 5.345 8 C -0.123 4.123 9 C 0.004 3.996 10 C -0.582 4.582 11 H 0.074 0.926 12 C -0.194 4.194 13 N -0.569 5.569 14 Si 0.782 3.218 15 H -0.198 1.198 16 H -0.210 1.210 17 H -0.190 1.190 18 C 0.069 3.931 19 C -0.197 4.197 20 C -0.049 4.049 21 N -0.218 5.218 22 C -0.050 4.050 23 C -0.200 4.200 24 H 0.106 0.894 25 H 0.110 0.890 26 H 0.105 0.895 27 H 0.159 0.841 28 H 0.161 0.839 29 H 0.092 0.908 30 H 0.061 0.939 31 H 0.024 0.976 32 H 0.017 0.983 33 H 0.071 0.929 34 H 0.177 0.823 35 H 0.208 0.792 36 H 0.196 0.804 37 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 5.102 -18.244 -5.574 19.747 hybrid contribution -0.121 0.763 0.821 1.128 sum 4.980 -17.481 -4.752 18.788 Atomic orbital electron populations 1.22373 0.75517 1.05309 1.04612 1.45609 1.08634 1.03082 1.72703 1.22810 0.88287 0.86926 0.73966 1.90664 1.15737 1.87729 1.50325 1.21677 0.95846 0.84522 1.00411 0.86620 1.59005 1.24007 1.43860 1.07653 1.21503 0.98676 0.99592 0.92569 1.18811 0.93318 0.92570 0.94921 1.21689 1.29529 1.11189 0.95836 0.92623 1.25855 0.96899 0.96338 1.00272 1.70089 1.37857 1.17573 1.31332 0.85636 0.78438 0.77768 0.79997 1.19784 1.21036 1.19014 1.18257 0.94049 0.86782 0.94021 1.22486 1.02843 0.96034 0.98338 1.23202 0.90614 0.94621 0.96434 1.67759 1.18439 1.34006 1.01594 1.22979 0.95953 0.89279 0.96751 1.22376 0.99849 0.98792 0.98959 0.89363 0.89000 0.89522 0.84061 0.83929 0.90829 0.93938 0.97624 0.98290 0.92929 0.82315 0.79167 0.80357 0.85662 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 1.17 9.71 127.77 1.24 2.41 16 2 N -0.57 -14.15 2.96 -653.95 -1.94 -16.09 16 3 C 0.49 15.04 6.80 87.66 0.60 15.64 16 4 O -0.57 -20.67 15.77 -3.01 -0.05 -20.72 16 5 C 0.09 2.90 2.32 44.17 0.10 3.00 16 6 H 0.12 3.34 7.40 -2.39 -0.02 3.33 16 7 N -0.82 -26.77 8.44 -171.81 -1.45 -28.22 16 8 C -0.09 -3.27 4.46 30.59 0.14 -3.14 16 9 C 0.04 2.04 4.86 29.85 0.15 2.19 16 10 C -0.54 -29.98 9.11 25.60 0.23 -29.75 16 11 H 0.06 2.95 7.74 -2.91 -0.02 2.92 16 12 C 0.00 0.25 5.46 84.65 0.46 0.71 16 13 N -0.93 -55.40 13.29 21.45 0.28 -55.12 16 14 Si 0.96 43.48 29.54 68.60 2.03 45.50 16 15 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 16 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 17 H -0.27 -11.46 7.11 99.48 0.71 -10.75 16 18 C 0.17 4.07 4.90 38.47 0.19 4.26 16 19 C -0.18 -3.31 9.93 22.48 0.22 -3.09 16 20 C 0.11 1.93 11.17 84.61 0.95 2.87 16 21 N -0.51 -11.17 10.36 -196.11 -2.03 -13.20 16 22 C 0.11 2.30 11.17 84.60 0.95 3.25 16 23 C -0.18 -4.40 9.36 22.48 0.21 -4.19 16 24 H 0.09 1.25 8.14 -2.39 -0.02 1.23 16 25 H 0.09 1.43 8.05 -2.39 -0.02 1.41 16 26 H 0.09 1.91 4.67 -2.39 -0.01 1.90 16 27 H 0.35 11.68 8.58 -89.69 -0.77 10.91 16 28 H 0.35 9.76 9.06 -89.69 -0.81 8.94 16 29 H 0.07 2.57 6.07 -2.39 -0.01 2.55 16 30 H 0.04 1.73 8.14 -2.39 -0.02 1.71 16 31 H 0.01 0.30 7.75 -2.39 -0.02 0.28 16 32 H 0.00 -0.07 8.14 -2.39 -0.02 -0.09 16 33 H 0.26 14.79 8.31 -92.71 -0.77 14.02 16 34 H 0.16 2.19 8.06 -2.91 -0.02 2.16 16 35 H 0.19 1.99 8.06 -2.92 -0.02 1.96 16 36 H 0.18 2.87 8.06 -2.91 -0.02 2.84 16 37 H 0.13 3.26 8.06 -2.91 -0.02 3.24 16 Total: -1.00 -70.31 315.22 1.79 -68.52 By element: Atomic # 1 Polarization: 25.63 SS G_CDS: -0.49 Total: 25.14 kcal Atomic # 6 Polarization: -11.25 SS G_CDS: 5.43 Total: -5.83 kcal Atomic # 7 Polarization: -107.50 SS G_CDS: -5.13 Total: -112.63 kcal Atomic # 8 Polarization: -20.67 SS G_CDS: -0.05 Total: -20.72 kcal Atomic # 14 Polarization: 43.48 SS G_CDS: 2.03 Total: 45.50 kcal Total: -70.31 1.79 -68.52 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000691621513.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.024 kcal (2) G-P(sol) polarization free energy of solvation -70.309 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.285 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.788 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.521 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.497 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds