Wall clock time and date at job start Mon Mar 30 2020 05:12:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52994 * 112.88233 * 2 1 4 4 C 1.54314 * 113.65896 * 131.33890 * 2 1 3 5 5 H 1.08999 * 113.96869 * 332.46434 * 4 2 1 6 6 N 1.46816 * 111.33413 * 203.09662 * 4 2 1 7 7 C 1.46809 * 110.97970 * 214.32332 * 6 4 2 8 8 C 1.52631 * 108.93581 * 65.25073 * 7 6 4 9 9 C 1.51828 * 110.80107 * 297.12162 * 8 7 6 10 10 C 1.49502 * 113.96119 * 43.70216 * 9 8 7 11 11 H 1.09006 * 111.78296 * 199.74774 * 10 9 8 12 12 C 1.53937 * 113.65887 * 228.54764 * 2 1 3 13 13 H 1.08997 * 113.73359 * 157.55606 * 12 2 1 14 14 N 1.46498 * 113.73566 * 26.27332 * 12 2 1 15 15 C 1.36939 * 120.00032 * 295.76665 * 14 12 2 16 16 H 1.07994 * 119.99756 * 316.97299 * 15 14 12 17 17 C 1.38813 * 120.00261 * 136.97569 * 15 14 12 18 18 N 1.31618 * 120.00531 * 165.45616 * 17 15 14 19 19 Si 1.86802 * 119.99741 * 345.45298 * 17 15 14 20 20 H 1.48496 * 109.47399 * 95.39120 * 19 17 15 21 21 H 1.48499 * 109.47285 * 215.39273 * 19 17 15 22 22 H 1.48506 * 109.47248 * 335.38976 * 19 17 15 23 23 C 1.46500 * 120.00091 * 115.76138 * 14 12 2 24 24 C 1.47198 * 109.46883 * 85.59410 * 23 14 12 25 25 N 5.55202 * 107.65627 * 241.61796 * 2 1 3 26 26 H 1.09000 * 109.47231 * 298.96955 * 1 2 3 27 27 H 1.09003 * 109.47602 * 58.97222 * 1 2 3 28 28 H 1.09008 * 109.46947 * 178.97400 * 1 2 3 29 29 H 1.08998 * 109.47758 * 197.42148 * 3 2 1 30 30 H 1.08998 * 109.47410 * 317.42259 * 3 2 1 31 31 H 1.09007 * 109.47373 * 77.42373 * 3 2 1 32 32 H 1.00907 * 110.99936 * 338.25679 * 6 4 2 33 33 H 1.08997 * 109.55849 * 305.41122 * 7 6 4 34 34 H 1.09000 * 109.55997 * 185.08676 * 7 6 4 35 35 H 1.09001 * 109.21671 * 57.46110 * 8 7 6 36 36 H 1.08999 * 109.21289 * 176.78262 * 8 7 6 37 37 H 1.09004 * 108.62939 * 165.82909 * 9 8 7 38 38 H 1.08995 * 108.63258 * 283.62894 * 9 8 7 39 39 H 0.96994 * 120.00241 * 179.97438 * 18 17 15 40 40 H 1.08995 * 109.47140 * 205.59644 * 23 14 12 41 41 H 1.09003 * 109.46651 * 325.59385 * 23 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1249 1.4095 0.0000 4 6 2.1492 -0.9336 1.0612 5 1 1.5180 -1.0899 1.9360 6 7 3.5158 -0.5205 1.4039 7 6 4.3589 -1.6858 1.6982 8 6 4.5133 -2.5188 0.4286 9 6 3.1696 -3.0563 -0.0302 10 6 2.0625 -2.0533 0.0278 11 1 1.0830 -2.5317 0.0323 12 6 2.1477 -0.9334 -1.0568 13 1 3.1685 -0.6689 -1.3328 14 7 1.2829 -1.1655 -2.2163 15 6 0.0859 -1.8118 -2.0592 16 1 0.0236 -2.6875 -1.4304 17 6 -1.0474 -1.3413 -2.7082 18 7 -2.1182 -2.1014 -2.7973 19 14 -1.0527 0.3709 -3.4553 20 1 -0.7063 0.2832 -4.8966 21 1 -2.4024 0.9718 -3.3063 22 1 -0.0535 1.2189 -2.7568 23 6 1.6986 -0.7061 -3.5438 24 6 2.5539 -1.7270 -4.1707 25 7 3.2140 -2.5148 -4.6546 26 1 -0.3634 0.4977 0.8991 27 1 -0.3634 0.5297 -0.8806 28 1 -0.3633 -1.0276 -0.0184 29 1 3.1695 1.3631 -0.3077 30 1 1.5690 2.0386 -0.6953 31 1 2.0600 1.8314 1.0031 32 1 3.9189 0.0410 0.6687 33 1 3.8896 -2.2887 2.4756 34 1 5.3395 -1.3506 2.0363 35 1 4.9387 -1.8969 -0.3590 36 1 5.1849 -3.3541 0.6271 37 1 3.2714 -3.4222 -1.0520 38 1 2.8923 -3.8936 0.6102 39 1 -2.9101 -1.7724 -3.2505 40 1 0.8173 -0.5401 -4.1633 41 1 2.2559 0.2258 -3.4477 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000703578256.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:12:32 Heat of formation + Delta-G solvation = 75.497247 kcal Electronic energy + Delta-G solvation = -21751.377961 eV Core-core repulsion = 18860.696890 eV Total energy + Delta-G solvation = -2890.681071 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.169 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.71790 -36.62087 -35.39439 -33.98056 -32.02048 -31.51872 -29.47619 -27.57985 -26.60139 -25.58339 -23.60915 -22.55062 -21.44692 -19.03058 -18.18169 -17.62907 -15.99706 -15.71126 -15.29435 -15.11252 -14.69101 -14.03171 -13.77653 -13.56885 -13.31416 -13.14870 -12.68948 -12.42914 -12.31608 -12.19242 -12.06342 -11.87176 -11.54763 -11.34424 -11.24678 -10.99302 -10.88581 -10.66267 -10.56623 -10.30816 -10.12340 -10.05297 -9.77228 -9.45614 -9.14104 -8.69218 -7.97963 -7.03871 -6.15961 -3.69994 3.12280 3.31138 3.31745 3.42083 3.53671 4.30743 4.51413 4.80413 4.85206 4.91846 5.08957 5.10402 5.17833 5.30075 5.32311 5.46216 5.57344 5.76768 5.84415 5.88818 5.94840 5.99793 6.10284 6.11225 6.14015 6.27520 6.32613 6.41861 6.46388 6.54662 6.66754 6.71354 6.77591 6.93489 7.08139 7.33582 7.51255 7.65456 7.86767 8.20895 8.31736 8.72312 9.45907 9.82818 10.96956 Molecular weight = 263.17amu Principal moments of inertia in cm(-1) A = 0.019526 B = 0.009344 C = 0.007892 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1433.632953 B = 2995.791018 C = 3547.163718 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.098 4.098 3 C -0.129 4.129 4 C 0.079 3.921 5 H 0.085 0.915 6 N -0.671 5.671 7 C 0.060 3.940 8 C -0.153 4.153 9 C -0.099 4.099 10 C -0.144 4.144 11 H 0.108 0.892 12 C 0.164 3.836 13 H 0.071 0.929 14 N -0.572 5.572 15 C -0.270 4.270 16 H 0.086 0.914 17 C 0.045 3.955 18 N -0.892 5.892 19 Si 0.866 3.134 20 H -0.285 1.285 21 H -0.295 1.295 22 H -0.253 1.253 23 C 0.212 3.788 24 C 0.205 3.795 25 N -0.476 5.476 26 H 0.026 0.974 27 H 0.059 0.941 28 H 0.085 0.915 29 H 0.045 0.955 30 H 0.051 0.949 31 H 0.054 0.946 32 H 0.338 0.662 33 H 0.070 0.930 34 H 0.068 0.932 35 H 0.054 0.946 36 H 0.059 0.941 37 H 0.060 0.940 38 H 0.049 0.951 39 H 0.267 0.733 40 H 0.094 0.906 41 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.493 5.770 6.897 12.369 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.101 4.101 3 C -0.186 4.186 4 C -0.032 4.032 5 H 0.103 0.897 6 N -0.301 5.301 7 C -0.070 4.070 8 C -0.192 4.192 9 C -0.137 4.137 10 C -0.166 4.166 11 H 0.126 0.874 12 C 0.056 3.944 13 H 0.089 0.911 14 N -0.290 5.290 15 C -0.398 4.398 16 H 0.103 0.897 17 C -0.157 4.157 18 N -0.531 5.531 19 Si 0.696 3.304 20 H -0.213 1.213 21 H -0.223 1.223 22 H -0.177 1.177 23 C 0.082 3.918 24 C -0.115 4.115 25 N -0.156 5.156 26 H 0.045 0.955 27 H 0.078 0.922 28 H 0.104 0.896 29 H 0.064 0.936 30 H 0.070 0.930 31 H 0.074 0.926 32 H 0.158 0.842 33 H 0.088 0.912 34 H 0.087 0.913 35 H 0.073 0.927 36 H 0.078 0.922 37 H 0.079 0.921 38 H 0.068 0.932 39 H 0.077 0.923 40 H 0.112 0.888 41 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 9.109 4.713 6.798 12.305 hybrid contribution -0.318 0.641 -1.383 1.558 sum 8.791 5.354 5.415 11.631 Atomic orbital electron populations 1.21614 0.91657 1.04200 0.99330 1.22735 0.97543 0.93587 0.96209 1.21621 0.99189 0.96568 1.01237 1.22512 0.89531 0.95412 0.95714 0.89682 1.60822 1.02282 1.19632 1.47322 1.21832 0.97067 0.91660 0.96440 1.21859 0.97948 1.00499 0.98877 1.20295 0.93781 0.98373 1.01256 1.22944 1.00370 0.95734 0.97533 0.87385 1.22695 0.92191 0.93878 0.85625 0.91076 1.43972 1.19383 1.67125 0.98538 1.18575 0.82697 1.07710 1.30860 0.89660 1.25588 0.95069 0.97047 0.97995 1.69771 1.04244 1.35973 1.43110 0.87140 0.77601 0.87163 0.78527 1.21343 1.22275 1.17737 1.19257 0.94381 0.90190 0.87972 1.31441 0.92856 0.95103 0.92061 1.80978 1.12453 1.11394 1.10797 0.95470 0.92210 0.89634 0.93646 0.93035 0.92650 0.84207 0.91150 0.91338 0.92696 0.92188 0.92128 0.93172 0.92294 0.88813 0.89666 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.03 7.39 37.16 0.27 -1.75 16 2 C -0.10 -1.57 1.32 -153.34 -0.20 -1.77 16 3 C -0.13 -1.81 8.40 37.15 0.31 -1.50 16 4 C 0.08 1.18 4.11 -67.27 -0.28 0.91 16 5 H 0.09 1.33 8.12 -51.93 -0.42 0.90 16 6 N -0.67 -8.87 6.44 -106.54 -0.69 -9.56 16 7 C 0.06 0.72 6.52 -4.06 -0.03 0.69 16 8 C -0.15 -1.97 5.92 -27.52 -0.16 -2.14 16 9 C -0.10 -1.54 5.49 -29.05 -0.16 -1.70 16 10 C -0.14 -2.40 3.10 -90.86 -0.28 -2.69 16 11 H 0.11 2.10 5.26 -51.93 -0.27 1.83 16 12 C 0.16 2.80 3.21 -65.76 -0.21 2.59 16 13 H 0.07 1.16 7.35 -51.93 -0.38 0.78 16 14 N -0.57 -11.47 2.05 -166.51 -0.34 -11.81 16 15 C -0.27 -6.38 5.97 -15.06 -0.09 -6.47 16 16 H 0.09 2.25 6.44 -52.49 -0.34 1.91 16 17 C 0.05 1.13 5.09 -17.43 -0.09 1.05 16 18 N -0.89 -24.60 13.97 55.49 0.78 -23.83 16 19 Si 0.87 19.05 22.58 -169.99 -3.84 15.22 16 20 H -0.29 -6.20 6.80 56.52 0.38 -5.82 16 21 H -0.30 -6.81 7.11 56.52 0.40 -6.41 16 22 H -0.25 -5.12 6.48 56.52 0.37 -4.75 16 23 C 0.21 3.98 4.71 -6.83 -0.03 3.95 16 24 C 0.21 4.13 15.76 -20.76 -0.33 3.80 16 25 N -0.48 -10.30 18.54 42.15 0.78 -9.52 16 26 H 0.03 0.44 8.14 -51.93 -0.42 0.02 16 27 H 0.06 1.19 4.50 -51.93 -0.23 0.96 16 28 H 0.08 1.76 5.26 -51.92 -0.27 1.48 16 29 H 0.04 0.57 6.40 -51.93 -0.33 0.24 16 30 H 0.05 0.75 8.10 -51.93 -0.42 0.33 16 31 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 32 H 0.34 4.34 5.78 -39.29 -0.23 4.11 16 33 H 0.07 0.86 8.13 -51.93 -0.42 0.44 16 34 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.05 0.73 8.01 -51.93 -0.42 0.31 16 36 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 37 H 0.06 1.08 8.14 -51.93 -0.42 0.65 16 38 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 39 H 0.27 7.06 8.31 -40.82 -0.34 6.72 16 40 H 0.09 1.89 3.67 -51.93 -0.19 1.70 16 41 H 0.09 1.32 8.11 -51.93 -0.42 0.90 16 LS Contribution 303.23 15.07 4.57 4.57 Total: -1.00 -26.33 303.23 -6.09 -32.41 By element: Atomic # 1 Polarization: 13.61 SS G_CDS: -6.07 Total: 7.53 kcal Atomic # 6 Polarization: -3.75 SS G_CDS: -1.27 Total: -5.02 kcal Atomic # 7 Polarization: -55.24 SS G_CDS: 0.53 Total: -54.71 kcal Atomic # 14 Polarization: 19.05 SS G_CDS: -3.84 Total: 15.22 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -26.33 -6.09 -32.41 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000703578256.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.910 kcal (2) G-P(sol) polarization free energy of solvation -26.326 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.584 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.087 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.413 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.497 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds