Wall clock time and date at job start Mon Mar 30 2020 05:12:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52994 * 112.88233 * 2 1 4 4 C 1.54314 * 113.65896 * 131.33890 * 2 1 3 5 5 H 1.08999 * 113.96869 * 332.46434 * 4 2 1 6 6 N 1.46816 * 111.33413 * 203.09662 * 4 2 1 7 7 C 1.46809 * 110.97970 * 214.32332 * 6 4 2 8 8 C 1.52631 * 108.93581 * 65.25073 * 7 6 4 9 9 C 1.51828 * 110.80107 * 297.12162 * 8 7 6 10 10 C 1.49502 * 113.96119 * 43.70216 * 9 8 7 11 11 H 1.09006 * 111.78296 * 199.74774 * 10 9 8 12 12 C 1.53937 * 113.65887 * 228.54764 * 2 1 3 13 13 H 1.08997 * 113.73359 * 157.55606 * 12 2 1 14 14 N 1.46498 * 113.73566 * 26.27332 * 12 2 1 15 15 C 1.36939 * 120.00032 * 295.76665 * 14 12 2 16 16 H 1.07994 * 119.99756 * 316.97299 * 15 14 12 17 17 C 1.38813 * 120.00261 * 136.97569 * 15 14 12 18 18 N 1.31618 * 120.00531 * 165.45616 * 17 15 14 19 19 Si 1.86802 * 119.99741 * 345.45298 * 17 15 14 20 20 H 1.48496 * 109.47399 * 95.39120 * 19 17 15 21 21 H 1.48499 * 109.47285 * 215.39273 * 19 17 15 22 22 H 1.48506 * 109.47248 * 335.38976 * 19 17 15 23 23 C 1.46500 * 120.00091 * 115.76138 * 14 12 2 24 24 C 1.47198 * 109.46883 * 85.59410 * 23 14 12 25 25 N 5.55202 * 107.65627 * 241.61796 * 2 1 3 26 26 H 1.09000 * 109.47231 * 298.96955 * 1 2 3 27 27 H 1.09003 * 109.47602 * 58.97222 * 1 2 3 28 28 H 1.09008 * 109.46947 * 178.97400 * 1 2 3 29 29 H 1.08998 * 109.47758 * 197.42148 * 3 2 1 30 30 H 1.08998 * 109.47410 * 317.42259 * 3 2 1 31 31 H 1.09007 * 109.47373 * 77.42373 * 3 2 1 32 32 H 1.00907 * 110.99936 * 338.25679 * 6 4 2 33 33 H 1.08997 * 109.55849 * 305.41122 * 7 6 4 34 34 H 1.09000 * 109.55997 * 185.08676 * 7 6 4 35 35 H 1.09001 * 109.21671 * 57.46110 * 8 7 6 36 36 H 1.08999 * 109.21289 * 176.78262 * 8 7 6 37 37 H 1.09004 * 108.62939 * 165.82909 * 9 8 7 38 38 H 1.08995 * 108.63258 * 283.62894 * 9 8 7 39 39 H 0.96994 * 120.00241 * 179.97438 * 18 17 15 40 40 H 1.08995 * 109.47140 * 205.59644 * 23 14 12 41 41 H 1.09003 * 109.46651 * 325.59385 * 23 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1249 1.4095 0.0000 4 6 2.1492 -0.9336 1.0612 5 1 1.5180 -1.0899 1.9360 6 7 3.5158 -0.5205 1.4039 7 6 4.3589 -1.6858 1.6982 8 6 4.5133 -2.5188 0.4286 9 6 3.1696 -3.0563 -0.0302 10 6 2.0625 -2.0533 0.0278 11 1 1.0830 -2.5317 0.0323 12 6 2.1477 -0.9334 -1.0568 13 1 3.1685 -0.6689 -1.3328 14 7 1.2829 -1.1655 -2.2163 15 6 0.0859 -1.8118 -2.0592 16 1 0.0236 -2.6875 -1.4304 17 6 -1.0474 -1.3413 -2.7082 18 7 -2.1182 -2.1014 -2.7973 19 14 -1.0527 0.3709 -3.4553 20 1 -0.7063 0.2832 -4.8966 21 1 -2.4024 0.9718 -3.3063 22 1 -0.0535 1.2189 -2.7568 23 6 1.6986 -0.7061 -3.5438 24 6 2.5539 -1.7270 -4.1707 25 7 3.2140 -2.5148 -4.6546 26 1 -0.3634 0.4977 0.8991 27 1 -0.3634 0.5297 -0.8806 28 1 -0.3633 -1.0276 -0.0184 29 1 3.1695 1.3631 -0.3077 30 1 1.5690 2.0386 -0.6953 31 1 2.0600 1.8314 1.0031 32 1 3.9189 0.0410 0.6687 33 1 3.8896 -2.2887 2.4756 34 1 5.3395 -1.3506 2.0363 35 1 4.9387 -1.8969 -0.3590 36 1 5.1849 -3.3541 0.6271 37 1 3.2714 -3.4222 -1.0520 38 1 2.8923 -3.8936 0.6102 39 1 -2.9101 -1.7724 -3.2505 40 1 0.8173 -0.5401 -4.1633 41 1 2.2559 0.2258 -3.4477 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000703578256.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:12:32 Heat of formation + Delta-G solvation = 58.643948 kcal Electronic energy + Delta-G solvation = -21752.108775 eV Core-core repulsion = 18860.696890 eV Total energy + Delta-G solvation = -2891.411885 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.169 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -42.02909 -38.17155 -36.86523 -35.44079 -33.65229 -32.96344 -30.69016 -29.14010 -27.99823 -27.07076 -24.96562 -23.72230 -22.94769 -20.37626 -19.75076 -19.09363 -17.58031 -17.21437 -16.87127 -16.39218 -15.89077 -15.32224 -15.26840 -14.99138 -14.73996 -14.66563 -14.18365 -13.92173 -13.78151 -13.64770 -13.42790 -13.19227 -13.01780 -12.80289 -12.60115 -12.52399 -12.27847 -11.97901 -11.92270 -11.70300 -11.68157 -11.57543 -11.07393 -11.00020 -10.58728 -10.45644 -9.10875 -8.74670 -8.10491 -5.63039 1.36869 1.50968 1.59564 1.79070 1.91450 2.47116 3.12942 3.30243 3.36869 3.42870 3.63255 3.84863 3.94551 4.04665 4.18031 4.22261 4.37710 4.41559 4.55231 4.66367 4.68739 4.73449 4.83907 4.95439 5.02737 5.08852 5.10929 5.17520 5.23719 5.28686 5.38704 5.41444 5.45173 5.59399 5.73655 5.90984 6.00252 6.26683 6.29899 6.62769 6.69095 6.97146 7.58650 7.98095 9.06389 Molecular weight = 263.17amu Principal moments of inertia in cm(-1) A = 0.019526 B = 0.009344 C = 0.007892 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1433.632953 B = 2995.791018 C = 3547.163718 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.094 4.094 3 C -0.123 4.123 4 C 0.095 3.905 5 H 0.078 0.922 6 N -0.663 5.663 7 C 0.063 3.937 8 C -0.145 4.145 9 C -0.095 4.095 10 C -0.147 4.147 11 H 0.068 0.932 12 C 0.159 3.841 13 H 0.093 0.907 14 N -0.580 5.580 15 C -0.238 4.238 16 H 0.043 0.957 17 C -0.007 4.007 18 N -0.950 5.950 19 Si 0.918 3.082 20 H -0.278 1.278 21 H -0.314 1.314 22 H -0.217 1.217 23 C 0.208 3.792 24 C 0.218 3.782 25 N -0.505 5.505 26 H 0.041 0.959 27 H 0.045 0.955 28 H 0.050 0.950 29 H 0.067 0.933 30 H 0.049 0.951 31 H 0.064 0.936 32 H 0.346 0.654 33 H 0.068 0.932 34 H 0.096 0.904 35 H 0.057 0.943 36 H 0.074 0.926 37 H 0.031 0.969 38 H 0.046 0.954 39 H 0.262 0.738 40 H 0.085 0.915 41 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.386 8.379 7.643 16.071 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.096 4.096 3 C -0.181 4.181 4 C -0.016 4.016 5 H 0.096 0.904 6 N -0.294 5.294 7 C -0.067 4.067 8 C -0.184 4.184 9 C -0.133 4.133 10 C -0.168 4.168 11 H 0.087 0.913 12 C 0.053 3.947 13 H 0.111 0.889 14 N -0.299 5.299 15 C -0.368 4.368 16 H 0.061 0.939 17 C -0.204 4.204 18 N -0.593 5.593 19 Si 0.746 3.254 20 H -0.205 1.205 21 H -0.243 1.243 22 H -0.139 1.139 23 C 0.079 3.921 24 C -0.101 4.101 25 N -0.185 5.185 26 H 0.060 0.940 27 H 0.063 0.937 28 H 0.069 0.931 29 H 0.086 0.914 30 H 0.068 0.932 31 H 0.083 0.917 32 H 0.166 0.834 33 H 0.086 0.914 34 H 0.114 0.886 35 H 0.076 0.924 36 H 0.093 0.907 37 H 0.050 0.950 38 H 0.065 0.935 39 H 0.071 0.929 40 H 0.102 0.898 41 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 12.065 7.339 7.561 16.018 hybrid contribution -1.189 -0.311 -1.542 1.972 sum 10.876 7.028 6.019 14.280 Atomic orbital electron populations 1.21480 0.93665 1.01900 0.99344 1.22605 0.95906 0.95323 0.95794 1.21585 1.00203 0.94310 1.01974 1.22297 0.90818 0.93736 0.94715 0.90368 1.60823 1.01244 1.20054 1.47250 1.21906 0.98070 0.91005 0.95702 1.21811 0.95967 1.01204 0.99397 1.20243 0.95346 0.98170 0.99562 1.22833 0.98846 0.96316 0.98853 0.91344 1.22937 0.92648 0.94427 0.84691 0.88875 1.44042 1.18633 1.66963 1.00213 1.18231 0.84199 1.05966 1.28403 0.93903 1.26136 0.94602 1.00367 0.99298 1.69927 1.05295 1.38066 1.45967 0.86293 0.77472 0.83197 0.78446 1.20513 1.24292 1.13926 1.19541 0.94455 0.91496 0.86616 1.31683 0.92325 0.94688 0.91416 1.80994 1.13730 1.12123 1.11666 0.93957 0.93651 0.93053 0.91402 0.93212 0.91699 0.83392 0.91389 0.88582 0.92389 0.90743 0.95019 0.93514 0.92895 0.89795 0.84685 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -3.83 7.39 71.98 0.53 -3.30 16 2 C -0.09 -2.78 1.32 -51.42 -0.07 -2.84 16 3 C -0.12 -2.90 8.40 71.98 0.60 -2.30 16 4 C 0.10 2.68 4.11 45.25 0.19 2.87 16 5 H 0.08 2.35 8.12 -2.39 -0.02 2.33 16 6 N -0.66 -14.98 6.44 -490.98 -3.16 -18.14 16 7 C 0.06 1.27 6.52 86.20 0.56 1.83 16 8 C -0.14 -3.32 5.92 30.09 0.18 -3.14 16 9 C -0.10 -2.92 5.49 29.09 0.16 -2.76 16 10 C -0.15 -4.87 3.10 -10.95 -0.03 -4.91 16 11 H 0.07 2.84 5.26 -2.38 -0.01 2.82 16 12 C 0.16 5.14 3.21 46.40 0.15 5.29 16 13 H 0.09 2.65 7.35 -2.39 -0.02 2.63 16 14 N -0.58 -22.65 2.05 -680.73 -1.40 -24.05 16 15 C -0.24 -11.60 5.97 84.03 0.50 -11.10 16 16 H 0.04 2.45 6.44 -2.91 -0.02 2.43 16 17 C -0.01 -0.37 5.09 84.86 0.43 0.06 16 18 N -0.95 -55.11 13.97 21.65 0.30 -54.81 16 19 Si 0.92 38.95 22.58 68.60 1.55 40.49 16 20 H -0.28 -11.35 6.80 99.48 0.68 -10.68 16 21 H -0.31 -14.26 7.11 99.48 0.71 -13.55 16 22 H -0.22 -7.84 6.48 99.48 0.64 -7.19 16 23 C 0.21 7.27 4.71 84.57 0.40 7.66 16 24 C 0.22 8.40 15.76 89.44 1.41 9.81 16 25 N -0.50 -21.27 18.54 20.01 0.37 -20.90 16 26 H 0.04 1.35 8.14 -2.39 -0.02 1.33 16 27 H 0.04 1.74 4.50 -2.39 -0.01 1.73 16 28 H 0.05 2.19 5.26 -2.38 -0.01 2.18 16 29 H 0.07 1.31 6.40 -2.39 -0.02 1.30 16 30 H 0.05 1.21 8.10 -2.39 -0.02 1.19 16 31 H 0.06 1.44 8.14 -2.38 -0.02 1.42 16 32 H 0.35 7.11 5.78 -89.69 -0.52 6.59 16 33 H 0.07 1.45 8.13 -2.39 -0.02 1.43 16 34 H 0.10 1.53 8.14 -2.39 -0.02 1.51 16 35 H 0.06 1.32 8.01 -2.39 -0.02 1.30 16 36 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 37 H 0.03 1.13 8.14 -2.38 -0.02 1.11 16 38 H 0.05 1.42 8.14 -2.39 -0.02 1.40 16 39 H 0.26 14.63 8.31 -92.71 -0.77 13.86 16 40 H 0.08 3.19 3.67 -2.39 -0.01 3.18 16 41 H 0.14 3.45 8.11 -2.39 -0.02 3.43 16 Total: -1.00 -60.08 303.23 3.10 -56.98 By element: Atomic # 1 Polarization: 22.82 SS G_CDS: 0.43 Total: 23.25 kcal Atomic # 6 Polarization: -7.85 SS G_CDS: 5.01 Total: -2.84 kcal Atomic # 7 Polarization: -114.00 SS G_CDS: -3.89 Total: -117.89 kcal Atomic # 14 Polarization: 38.95 SS G_CDS: 1.55 Total: 40.49 kcal Total: -60.08 3.10 -56.98 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000703578256.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.627 kcal (2) G-P(sol) polarization free energy of solvation -60.084 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.542 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.102 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.983 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.644 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds