Wall clock time and date at job start Mon Mar 30 2020 05:08:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.30835 * 125.89667 * 2 1 4 4 N 1.40082 * 108.20703 * 180.02562 * 3 2 1 5 5 C 1.46504 * 126.04215 * 180.02562 * 4 3 2 6 6 C 1.34953 * 107.92599 * 359.75581 * 4 3 2 7 7 C 1.35323 * 107.74187 * 0.38945 * 6 4 3 8 8 C 1.50697 * 126.03924 * 179.87212 * 7 6 4 9 9 N 1.46899 * 109.47092 * 103.46245 * 8 7 6 10 10 C 1.46899 * 111.00032 * 291.94578 * 9 8 7 11 11 C 1.46897 * 111.00095 * 167.99739 * 9 8 7 12 12 C 1.53003 * 109.47114 * 200.56459 * 11 9 8 13 13 C 1.50698 * 115.55131 * 57.38169 * 12 11 9 14 14 H 1.08009 * 119.99720 * 244.53609 * 13 12 11 15 15 C 1.37872 * 120.00266 * 64.53650 * 13 12 11 16 16 N 1.31515 * 119.99996 * 8.73859 * 15 13 12 17 17 Si 1.86802 * 119.99973 * 188.74379 * 15 13 12 18 18 H 1.48497 * 109.47007 * 179.97438 * 17 15 13 19 19 H 1.48490 * 109.47146 * 299.99795 * 17 15 13 20 20 H 1.48504 * 109.47002 * 59.99976 * 17 15 13 21 21 C 1.52998 * 117.49639 * 203.05300 * 12 11 9 22 22 C 1.53000 * 117.49486 * 271.70905 * 12 11 9 23 23 H 1.09003 * 109.46913 * 274.65465 * 1 2 3 24 24 H 1.08993 * 109.47375 * 34.65632 * 1 2 3 25 25 H 1.09002 * 109.46999 * 154.65797 * 1 2 3 26 26 H 1.08997 * 109.47494 * 89.96908 * 5 4 3 27 27 H 1.08994 * 109.47265 * 209.97648 * 5 4 3 28 28 H 1.09011 * 109.46600 * 329.97182 * 5 4 3 29 29 H 1.07997 * 126.12869 * 180.24256 * 6 4 3 30 30 H 1.09003 * 109.46969 * 343.46499 * 8 7 6 31 31 H 1.09003 * 109.47175 * 223.46382 * 8 7 6 32 32 H 1.08998 * 109.47351 * 300.08384 * 10 9 8 33 33 H 1.09004 * 109.47139 * 60.07801 * 10 9 8 34 34 H 1.09001 * 109.47157 * 180.02562 * 10 9 8 35 35 H 1.08998 * 109.47606 * 80.55567 * 11 9 8 36 36 H 1.09005 * 109.46693 * 320.56087 * 11 9 8 37 37 H 0.96997 * 119.99679 * 356.74817 * 16 15 13 38 38 H 1.09000 * 117.49663 * 215.00068 * 21 12 11 39 39 H 1.08995 * 117.50132 * 0.02562 * 21 12 11 40 40 H 1.09000 * 117.50192 * 359.97438 * 22 12 11 41 41 H 1.09005 * 117.49749 * 144.97252 * 22 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2741 1.0599 0.0000 4 7 3.6087 0.6342 -0.0006 5 6 4.7899 1.5009 -0.0003 6 6 3.6143 -0.7153 0.0045 7 6 2.3271 -1.1330 -0.0005 8 6 1.8600 -2.5657 -0.0002 9 7 1.3956 -2.9291 1.3452 10 6 2.5153 -2.9703 2.2953 11 6 0.6746 -4.2088 1.3256 12 6 -0.2134 -4.3130 2.5672 13 6 -1.2193 -3.2045 2.7418 14 1 -1.1440 -2.5350 3.5860 15 6 -2.2356 -3.0450 1.8239 16 7 -2.4324 -3.9558 0.8958 17 14 -3.3331 -1.5353 1.8986 18 1 -4.3404 -1.6012 0.8095 19 1 -4.0253 -1.4909 3.2116 20 1 -2.5057 -0.3132 1.7336 21 6 -0.6182 -5.7138 3.0306 22 6 0.4079 -4.9089 3.8320 23 1 -0.3633 0.0834 1.0243 24 1 -0.3634 0.8453 -0.5843 25 1 -0.3633 -0.9288 -0.4399 26 1 5.0828 1.7156 1.0274 27 1 5.6093 0.9985 -0.5142 28 1 4.5563 2.4336 -0.5139 29 1 4.4892 -1.3484 0.0092 30 1 2.6853 -3.2170 -0.2880 31 1 1.0413 -2.6811 -0.7106 32 1 3.2452 -3.7092 1.9648 33 1 2.9877 -1.9891 2.3429 34 1 2.1436 -3.2421 3.2833 35 1 1.3916 -5.0298 1.3216 36 1 0.0552 -4.2631 0.4303 37 1 -1.8336 -4.7158 0.8275 38 1 -1.6121 -5.8336 3.4618 39 1 -0.2516 -6.5611 2.4513 40 1 1.4491 -5.2271 3.7795 41 1 0.0895 -4.4988 4.7905 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000716389846.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:08:15 Heat of formation + Delta-G solvation = 107.994612 kcal Electronic energy + Delta-G solvation = -20711.314249 eV Core-core repulsion = 17822.042369 eV Total energy + Delta-G solvation = -2889.271879 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.169 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.95120 -37.68489 -35.31163 -33.52603 -31.79417 -30.50072 -29.18164 -26.89223 -26.56959 -24.75958 -24.32084 -21.59627 -21.20749 -20.36492 -19.10660 -18.99943 -16.57567 -16.20230 -15.46581 -14.59682 -14.52857 -14.30266 -13.84418 -13.62884 -13.32665 -13.09827 -13.04714 -12.50490 -12.26642 -12.12927 -11.98058 -11.75730 -11.58309 -11.22797 -10.95057 -10.76100 -10.69564 -10.57181 -10.32369 -10.13383 -9.96795 -9.30127 -8.85331 -8.63129 -8.34099 -8.06373 -7.93880 -7.31665 -6.15129 -3.81836 2.12974 2.73530 3.11669 3.54469 3.56802 3.74343 4.59660 4.66153 4.80158 4.98329 5.09392 5.26112 5.29722 5.34888 5.53717 5.58779 5.66514 5.88095 5.94298 6.03528 6.08221 6.18408 6.23309 6.36311 6.37699 6.43750 6.49408 6.52191 6.62573 6.62705 6.64512 6.85179 6.94654 7.13430 7.25888 7.32033 7.37859 7.93394 8.04697 8.08403 8.49351 8.62374 9.07609 9.86497 11.23476 Molecular weight = 263.17amu Principal moments of inertia in cm(-1) A = 0.019182 B = 0.007244 C = 0.005763 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1459.337153 B = 3864.307979 C = 4857.528453 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C 0.109 3.891 3 N -0.310 5.310 4 N -0.387 5.387 5 C 0.109 3.891 6 C 0.046 3.954 7 C -0.210 4.210 8 C 0.133 3.867 9 N -0.503 5.503 10 C 0.035 3.965 11 C 0.097 3.903 12 C 0.043 3.957 13 C -0.535 4.535 14 H 0.046 0.954 15 C 0.031 3.969 16 N -0.913 5.913 17 Si 1.055 2.945 18 H -0.286 1.286 19 H -0.294 1.294 20 H -0.281 1.281 21 C -0.196 4.196 22 C -0.200 4.200 23 H 0.086 0.914 24 H 0.060 0.940 25 H 0.083 0.917 26 H 0.068 0.932 27 H 0.081 0.919 28 H 0.084 0.916 29 H 0.165 0.835 30 H 0.023 0.977 31 H 0.079 0.921 32 H 0.005 0.995 33 H 0.053 0.947 34 H 0.071 0.929 35 H 0.001 0.999 36 H 0.074 0.926 37 H 0.270 0.730 38 H 0.080 0.920 39 H 0.061 0.939 40 H 0.063 0.937 41 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.985 5.434 -2.886 14.369 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.057 4.057 3 N -0.133 5.133 4 N -0.169 5.169 5 C -0.033 4.033 6 C -0.099 4.099 7 C -0.222 4.222 8 C 0.004 3.996 9 N -0.226 5.226 10 C -0.114 4.114 11 C -0.030 4.030 12 C 0.042 3.958 13 C -0.573 4.573 14 H 0.064 0.936 15 C -0.173 4.173 16 N -0.550 5.550 17 Si 0.884 3.116 18 H -0.211 1.211 19 H -0.221 1.221 20 H -0.207 1.207 21 C -0.235 4.235 22 C -0.237 4.237 23 H 0.104 0.896 24 H 0.079 0.921 25 H 0.102 0.898 26 H 0.087 0.913 27 H 0.099 0.901 28 H 0.103 0.897 29 H 0.182 0.818 30 H 0.041 0.959 31 H 0.097 0.903 32 H 0.023 0.977 33 H 0.071 0.929 34 H 0.089 0.911 35 H 0.020 0.980 36 H 0.093 0.907 37 H 0.081 0.919 38 H 0.099 0.901 39 H 0.079 0.921 40 H 0.081 0.919 41 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 11.519 7.896 -3.456 14.387 hybrid contribution 2.236 -2.307 0.660 3.280 sum 13.755 5.590 -2.796 15.109 Atomic orbital electron populations 1.20240 0.86005 1.02794 1.03877 1.22304 0.97125 0.89733 0.96585 1.77285 0.86100 1.22897 1.27059 1.48237 1.05526 1.04476 1.58701 1.21703 0.83905 0.94901 1.02825 1.22195 0.98984 0.84916 1.03835 1.19939 0.91251 0.96490 1.14471 1.20314 0.97877 0.89518 0.91917 1.61649 1.23469 1.32340 1.05131 1.22322 0.92074 0.99132 0.97880 1.21724 0.94214 0.86574 1.00536 1.19083 0.95627 0.91895 0.89222 1.21045 1.11361 1.13349 1.11499 0.93565 1.25493 0.97286 1.01190 0.93308 1.70773 1.37911 1.11140 1.35128 0.83784 0.76081 0.75944 0.75765 1.21126 1.22071 1.20724 1.22941 0.98347 0.96666 1.05502 1.22794 0.95498 1.07638 0.97760 0.89563 0.92134 0.89775 0.91312 0.90054 0.89718 0.81820 0.95864 0.90281 0.97710 0.92856 0.91072 0.98045 0.90730 0.91854 0.90114 0.92061 0.91889 0.90602 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.31 10.30 36.01 0.37 -0.94 16 2 C 0.11 2.01 7.22 -82.41 -0.59 1.42 16 3 N -0.31 -5.54 12.58 33.67 0.42 -5.12 16 4 N -0.39 -5.59 4.01 -68.16 -0.27 -5.86 16 5 C 0.11 0.98 11.47 59.85 0.69 1.67 16 6 C 0.05 0.67 10.96 -17.22 -0.19 0.48 16 7 C -0.21 -3.59 4.70 -105.05 -0.49 -4.09 16 8 C 0.13 2.36 5.08 -4.98 -0.03 2.33 16 9 N -0.50 -10.18 4.41 -244.37 -1.08 -11.26 16 10 C 0.03 0.62 9.15 60.06 0.55 1.17 16 11 C 0.10 2.14 4.64 -3.82 -0.02 2.12 16 12 C 0.04 1.03 0.82 -155.66 -0.13 0.90 16 13 C -0.53 -14.48 8.58 -34.44 -0.30 -14.78 16 14 H 0.05 1.31 7.83 -52.48 -0.41 0.90 16 15 C 0.03 0.86 5.37 -17.82 -0.10 0.76 16 16 N -0.91 -26.16 13.36 55.43 0.74 -25.42 16 17 Si 1.05 24.88 29.91 -169.99 -5.08 19.79 16 18 H -0.29 -6.80 7.11 56.52 0.40 -6.39 16 19 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 20 H -0.28 -6.24 6.70 56.52 0.38 -5.86 16 21 C -0.20 -4.49 9.55 -26.70 -0.25 -4.75 16 22 C -0.20 -4.34 8.47 -26.69 -0.23 -4.56 16 23 H 0.09 1.74 7.73 -51.93 -0.40 1.34 16 24 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 25 H 0.08 1.62 7.48 -51.93 -0.39 1.24 16 26 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 27 H 0.08 0.51 8.14 -51.93 -0.42 0.08 16 28 H 0.08 0.71 8.14 -51.92 -0.42 0.29 16 29 H 0.16 1.78 8.06 -52.49 -0.42 1.35 16 30 H 0.02 0.37 8.08 -51.93 -0.42 -0.05 16 31 H 0.08 1.48 7.32 -51.93 -0.38 1.10 16 32 H 0.00 0.08 8.13 -51.93 -0.42 -0.35 16 33 H 0.05 0.93 7.01 -51.93 -0.36 0.56 16 34 H 0.07 1.37 5.94 -51.93 -0.31 1.06 16 35 H 0.00 0.03 7.95 -51.93 -0.41 -0.38 16 36 H 0.07 1.77 6.27 -51.93 -0.33 1.45 16 37 H 0.27 7.69 5.91 -40.82 -0.24 7.45 16 38 H 0.08 1.95 8.14 -51.93 -0.42 1.53 16 39 H 0.06 1.30 8.14 -51.93 -0.42 0.88 16 40 H 0.06 1.24 7.76 -51.93 -0.40 0.84 16 41 H 0.08 1.67 8.14 -51.93 -0.42 1.24 16 LS Contribution 333.96 15.07 5.03 5.03 Total: -1.00 -30.87 333.96 -7.63 -38.51 By element: Atomic # 1 Polarization: 9.27 SS G_CDS: -6.68 Total: 2.59 kcal Atomic # 6 Polarization: -17.55 SS G_CDS: -0.71 Total: -18.26 kcal Atomic # 7 Polarization: -47.47 SS G_CDS: -0.19 Total: -47.66 kcal Atomic # 14 Polarization: 24.88 SS G_CDS: -5.08 Total: 19.79 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -30.87 -7.63 -38.51 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000716389846.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 146.502 kcal (2) G-P(sol) polarization free energy of solvation -30.875 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 115.627 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.632 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.507 kcal (6) G-S(sol) free energy of system = (1) + (5) 107.995 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds